HEADER PROTEIN BINDING 12-MAR-17 5XAE TITLE MUTNLIR_LC3B COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3B; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: AUTOPHAGY-RELATED PROTEIN LC3 B,AUTOPHAGY-RELATED UBIQUITIN- COMPND 5 LIKE MODIFIER LC3 B,MAP1 LIGHT CHAIN 3-LIKE PROTEIN 2,MAP1A/MAP1B COMPND 6 LIGHT CHAIN 3 B,MAP1A/MAP1B LC3 B,MICROTUBULE-ASSOCIATED PROTEIN 1 COMPND 7 LIGHT CHAIN 3 BETA; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP1LC3B, MAP1ALC3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS AUTOPHAGY, LC3B, ATG8, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.H.KWON,L.KIM,H.K.SONG REVDAT 4 22-NOV-23 5XAE 1 REMARK REVDAT 3 02-AUG-17 5XAE 1 JRNL REVDAT 2 19-JUL-17 5XAE 1 JRNL REVDAT 1 12-JUL-17 5XAE 0 JRNL AUTH D.H.KWON,L.KIM,B.W.KIM,J.H.KIM,K.H.ROH,E.J.CHOI,H.K.SONG JRNL TITL A NOVEL CONFORMATION OF THE LC3-INTERACTING REGION MOTIF JRNL TITL 2 REVEALED BY THE STRUCTURE OF A COMPLEX BETWEEN LC3B AND RAVZ JRNL REF BIOCHEM. BIOPHYS. RES. V. 490 1093 2017 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 28668392 JRNL DOI 10.1016/J.BBRC.2017.06.173 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 32288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9313 - 4.8081 0.96 2179 144 0.2048 0.2082 REMARK 3 2 4.8081 - 3.8173 0.98 2189 144 0.1661 0.1916 REMARK 3 3 3.8173 - 3.3350 0.99 2249 149 0.1920 0.2191 REMARK 3 4 3.3350 - 3.0302 0.98 2222 144 0.2184 0.2815 REMARK 3 5 3.0302 - 2.8131 0.98 2190 144 0.2446 0.3235 REMARK 3 6 2.8131 - 2.6473 0.98 2226 147 0.2354 0.3071 REMARK 3 7 2.6473 - 2.5147 0.98 2230 147 0.2337 0.2634 REMARK 3 8 2.5147 - 2.4053 0.97 2197 146 0.2392 0.2730 REMARK 3 9 2.4053 - 2.3127 0.97 2158 141 0.2355 0.3139 REMARK 3 10 2.3127 - 2.2329 0.96 2215 147 0.2783 0.3047 REMARK 3 11 2.2329 - 2.1631 0.95 2166 143 0.2846 0.3319 REMARK 3 12 2.1631 - 2.1012 0.94 2115 140 0.2938 0.3698 REMARK 3 13 2.1012 - 2.0459 0.90 2029 133 0.3253 0.3781 REMARK 3 14 2.0459 - 1.9960 0.86 1928 126 0.3317 0.4082 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4235 REMARK 3 ANGLE : 1.727 5701 REMARK 3 CHIRALITY : 0.099 630 REMARK 3 PLANARITY : 0.010 742 REMARK 3 DIHEDRAL : 14.055 2621 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003176. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32311 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.996 REMARK 200 RESOLUTION RANGE LOW (A) : 39.923 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3VTU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PENTAERYTHRITOL PROPOXYLATE, 0.1M REMARK 280 HEPES PH 7.0, 0.2M POTASSIUM CHLORIDE., VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A -23 REMARK 465 VAL A -22 REMARK 465 ASP A -21 REMARK 465 GLU A -20 REMARK 465 ALA A -19 REMARK 465 GLU A -18 REMARK 465 GLU A -17 REMARK 465 LEU A -16 REMARK 465 GLY A -15 REMARK 465 GLU A -14 REMARK 465 GLN A -13 REMARK 465 GLU A -12 REMARK 465 SER A -11 REMARK 465 ASP A -10 REMARK 465 ILE A -9 REMARK 465 MET A 86 REMARK 465 VAL A 87 REMARK 465 SER A 88 REMARK 465 GLY A 118 REMARK 465 ILE B -23 REMARK 465 VAL B -22 REMARK 465 ASP B -21 REMARK 465 GLU B -20 REMARK 465 ALA B -19 REMARK 465 GLU B -18 REMARK 465 GLU B -17 REMARK 465 LEU B -16 REMARK 465 GLY B -15 REMARK 465 GLU B -14 REMARK 465 GLN B -13 REMARK 465 GLU B -12 REMARK 465 SER B -11 REMARK 465 MET B 86 REMARK 465 VAL B 87 REMARK 465 SER B 88 REMARK 465 VAL B 89 REMARK 465 SER B 90 REMARK 465 GLY B 118 REMARK 465 ILE C -23 REMARK 465 VAL C -22 REMARK 465 ASP C -21 REMARK 465 GLU C -20 REMARK 465 ALA C -19 REMARK 465 GLU C -18 REMARK 465 GLU C -17 REMARK 465 LEU C -16 REMARK 465 GLY C -15 REMARK 465 GLU C -14 REMARK 465 GLN C -13 REMARK 465 GLU C -12 REMARK 465 SER C -11 REMARK 465 ASP C -10 REMARK 465 ILE C -9 REMARK 465 GLY C 118 REMARK 465 ILE D -23 REMARK 465 VAL D -22 REMARK 465 ASP D -21 REMARK 465 GLU D -20 REMARK 465 ALA D -19 REMARK 465 GLU D -18 REMARK 465 GLU D -17 REMARK 465 LEU D -16 REMARK 465 GLY D -15 REMARK 465 GLU D -14 REMARK 465 GLN D -13 REMARK 465 GLU D -12 REMARK 465 SER D -11 REMARK 465 ASP D -10 REMARK 465 GLY D 118 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 242 O HOH D 258 1.85 REMARK 500 OE2 GLU C 12 O HOH C 201 2.02 REMARK 500 ND2 ASN A 57 O HOH A 201 2.05 REMARK 500 OE1 GLU A 115 O HOH A 202 2.06 REMARK 500 O GLY D -1 O HOH D 201 2.08 REMARK 500 OE2 GLU B 2 O HOH B 201 2.10 REMARK 500 NE2 GLN C 41 O HOH C 202 2.12 REMARK 500 O HOH D 209 O HOH D 210 2.16 REMARK 500 O SER C 90 O HOH C 203 2.16 REMARK 500 OD1 ASP D 46 O HOH D 202 2.16 REMARK 500 OD2 ASP B 54 O HOH B 202 2.17 REMARK 500 O HOH B 228 O HOH B 231 2.17 REMARK 500 O HOH B 239 O HOH B 240 2.18 REMARK 500 O HOH A 224 O HOH A 247 2.19 REMARK 500 O MET C 86 O HOH C 204 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 3 CD LYS A 3 CE 0.155 REMARK 500 LYS A 3 CE LYS A 3 NZ 0.181 REMARK 500 GLU C 2 CB GLU C 2 CG 0.181 REMARK 500 GLU C 2 CD GLU C 2 OE2 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A -8 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 9 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 GLN A 41 CA - CB - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 ARG B 8 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 GLU B 95 CA - CB - CG ANGL. DEV. = -16.6 DEGREES REMARK 500 ASP C -8 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 GLU C 16 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ASP C 46 CB - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 ASP C 46 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 THR C 91 C - N - CA ANGL. DEV. = 24.3 DEGREES REMARK 500 LEU D -3 CB - CG - CD2 ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG D 9 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG D 19 CA - CB - CG ANGL. DEV. = 20.4 DEGREES REMARK 500 ARG D 19 CB - CG - CD ANGL. DEV. = -28.5 DEGREES REMARK 500 ARG D 19 CG - CD - NE ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG D 19 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 LYS D 63 CG - CD - CE ANGL. DEV. = 19.4 DEGREES REMARK 500 ARG D 67 CG - CD - NE ANGL. DEV. = 15.7 DEGREES REMARK 500 ASN D 72 CB - CA - C ANGL. DEV. = -15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE D 11 50.72 -69.51 REMARK 500 GLU D 12 -39.29 -145.19 REMARK 500 VAL D 89 -71.35 -76.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN D 74 GLN D 75 -124.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU B 23 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XAD RELATED DB: PDB REMARK 900 RELATED ID: 5XAC RELATED DB: PDB DBREF 5XAE A 0 118 UNP Q9GZQ8 MLP3B_HUMAN 2 120 DBREF 5XAE B 0 118 UNP Q9GZQ8 MLP3B_HUMAN 2 120 DBREF 5XAE C 0 118 UNP Q9GZQ8 MLP3B_HUMAN 2 120 DBREF 5XAE D 0 118 UNP Q9GZQ8 MLP3B_HUMAN 2 120 SEQADV 5XAE ILE A -23 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE VAL A -22 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ASP A -21 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU A -20 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ALA A -19 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU A -18 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU A -17 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE LEU A -16 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLY A -15 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU A -14 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLN A -13 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU A -12 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE SER A -11 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ASP A -10 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ILE A -9 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ASP A -8 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU A -7 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE PHE A -6 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ASP A -5 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE LEU A -4 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE LEU A -3 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU A -2 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLY A -1 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ILE B -23 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE VAL B -22 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ASP B -21 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU B -20 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ALA B -19 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU B -18 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU B -17 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE LEU B -16 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLY B -15 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU B -14 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLN B -13 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU B -12 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE SER B -11 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ASP B -10 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ILE B -9 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ASP B -8 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU B -7 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE PHE B -6 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ASP B -5 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE LEU B -4 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE LEU B -3 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU B -2 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLY B -1 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ILE C -23 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE VAL C -22 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ASP C -21 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU C -20 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ALA C -19 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU C -18 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU C -17 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE LEU C -16 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLY C -15 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU C -14 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLN C -13 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU C -12 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE SER C -11 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ASP C -10 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ILE C -9 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ASP C -8 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU C -7 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE PHE C -6 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ASP C -5 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE LEU C -4 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE LEU C -3 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU C -2 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLY C -1 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ILE D -23 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE VAL D -22 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ASP D -21 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU D -20 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ALA D -19 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU D -18 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU D -17 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE LEU D -16 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLY D -15 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU D -14 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLN D -13 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU D -12 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE SER D -11 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ASP D -10 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ILE D -9 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ASP D -8 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU D -7 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE PHE D -6 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE ASP D -5 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE LEU D -4 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE LEU D -3 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLU D -2 UNP Q9GZQ8 EXPRESSION TAG SEQADV 5XAE GLY D -1 UNP Q9GZQ8 EXPRESSION TAG SEQRES 1 A 142 ILE VAL ASP GLU ALA GLU GLU LEU GLY GLU GLN GLU SER SEQRES 2 A 142 ASP ILE ASP GLU PHE ASP LEU LEU GLU GLY PRO SER GLU SEQRES 3 A 142 LYS THR PHE LYS GLN ARG ARG THR PHE GLU GLN ARG VAL SEQRES 4 A 142 GLU ASP VAL ARG LEU ILE ARG GLU GLN HIS PRO THR LYS SEQRES 5 A 142 ILE PRO VAL ILE ILE GLU ARG TYR LYS GLY GLU LYS GLN SEQRES 6 A 142 LEU PRO VAL LEU ASP LYS THR LYS PHE LEU VAL PRO ASP SEQRES 7 A 142 HIS VAL ASN MET SER GLU LEU ILE LYS ILE ILE ARG ARG SEQRES 8 A 142 ARG LEU GLN LEU ASN ALA ASN GLN ALA PHE PHE LEU LEU SEQRES 9 A 142 VAL ASN GLY HIS SER MET VAL SER VAL SER THR PRO ILE SEQRES 10 A 142 SER GLU VAL TYR GLU SER GLU LYS ASP GLU ASP GLY PHE SEQRES 11 A 142 LEU TYR MET VAL TYR ALA SER GLN GLU THR PHE GLY SEQRES 1 B 142 ILE VAL ASP GLU ALA GLU GLU LEU GLY GLU GLN GLU SER SEQRES 2 B 142 ASP ILE ASP GLU PHE ASP LEU LEU GLU GLY PRO SER GLU SEQRES 3 B 142 LYS THR PHE LYS GLN ARG ARG THR PHE GLU GLN ARG VAL SEQRES 4 B 142 GLU ASP VAL ARG LEU ILE ARG GLU GLN HIS PRO THR LYS SEQRES 5 B 142 ILE PRO VAL ILE ILE GLU ARG TYR LYS GLY GLU LYS GLN SEQRES 6 B 142 LEU PRO VAL LEU ASP LYS THR LYS PHE LEU VAL PRO ASP SEQRES 7 B 142 HIS VAL ASN MET SER GLU LEU ILE LYS ILE ILE ARG ARG SEQRES 8 B 142 ARG LEU GLN LEU ASN ALA ASN GLN ALA PHE PHE LEU LEU SEQRES 9 B 142 VAL ASN GLY HIS SER MET VAL SER VAL SER THR PRO ILE SEQRES 10 B 142 SER GLU VAL TYR GLU SER GLU LYS ASP GLU ASP GLY PHE SEQRES 11 B 142 LEU TYR MET VAL TYR ALA SER GLN GLU THR PHE GLY SEQRES 1 C 142 ILE VAL ASP GLU ALA GLU GLU LEU GLY GLU GLN GLU SER SEQRES 2 C 142 ASP ILE ASP GLU PHE ASP LEU LEU GLU GLY PRO SER GLU SEQRES 3 C 142 LYS THR PHE LYS GLN ARG ARG THR PHE GLU GLN ARG VAL SEQRES 4 C 142 GLU ASP VAL ARG LEU ILE ARG GLU GLN HIS PRO THR LYS SEQRES 5 C 142 ILE PRO VAL ILE ILE GLU ARG TYR LYS GLY GLU LYS GLN SEQRES 6 C 142 LEU PRO VAL LEU ASP LYS THR LYS PHE LEU VAL PRO ASP SEQRES 7 C 142 HIS VAL ASN MET SER GLU LEU ILE LYS ILE ILE ARG ARG SEQRES 8 C 142 ARG LEU GLN LEU ASN ALA ASN GLN ALA PHE PHE LEU LEU SEQRES 9 C 142 VAL ASN GLY HIS SER MET VAL SER VAL SER THR PRO ILE SEQRES 10 C 142 SER GLU VAL TYR GLU SER GLU LYS ASP GLU ASP GLY PHE SEQRES 11 C 142 LEU TYR MET VAL TYR ALA SER GLN GLU THR PHE GLY SEQRES 1 D 142 ILE VAL ASP GLU ALA GLU GLU LEU GLY GLU GLN GLU SER SEQRES 2 D 142 ASP ILE ASP GLU PHE ASP LEU LEU GLU GLY PRO SER GLU SEQRES 3 D 142 LYS THR PHE LYS GLN ARG ARG THR PHE GLU GLN ARG VAL SEQRES 4 D 142 GLU ASP VAL ARG LEU ILE ARG GLU GLN HIS PRO THR LYS SEQRES 5 D 142 ILE PRO VAL ILE ILE GLU ARG TYR LYS GLY GLU LYS GLN SEQRES 6 D 142 LEU PRO VAL LEU ASP LYS THR LYS PHE LEU VAL PRO ASP SEQRES 7 D 142 HIS VAL ASN MET SER GLU LEU ILE LYS ILE ILE ARG ARG SEQRES 8 D 142 ARG LEU GLN LEU ASN ALA ASN GLN ALA PHE PHE LEU LEU SEQRES 9 D 142 VAL ASN GLY HIS SER MET VAL SER VAL SER THR PRO ILE SEQRES 10 D 142 SER GLU VAL TYR GLU SER GLU LYS ASP GLU ASP GLY PHE SEQRES 11 D 142 LEU TYR MET VAL TYR ALA SER GLN GLU THR PHE GLY FORMUL 5 HOH *212(H2 O) HELIX 1 AA1 THR A 4 ARG A 9 1 6 HELIX 2 AA2 THR A 10 HIS A 25 1 16 HELIX 3 AA3 ASN A 57 LEU A 69 1 13 HELIX 4 AA4 PRO A 92 LYS A 101 1 10 HELIX 5 AA5 THR B 4 ARG B 9 1 6 HELIX 6 AA6 THR B 10 HIS B 25 1 16 HELIX 7 AA7 ASN B 57 LEU B 69 1 13 HELIX 8 AA8 PRO B 92 LYS B 101 1 10 HELIX 9 AA9 THR C 4 ARG C 9 1 6 HELIX 10 AB1 THR C 10 HIS C 25 1 16 HELIX 11 AB2 ASN C 57 LEU C 69 1 13 HELIX 12 AB3 PRO C 92 LYS C 101 1 10 HELIX 13 AB4 THR D 4 ARG D 9 1 6 HELIX 14 AB5 GLU D 12 HIS D 25 1 14 HELIX 15 AB6 ASN D 57 LEU D 69 1 13 HELIX 16 AB7 PRO D 92 LYS D 101 1 10 SHEET 1 AA1 5 ASP A -5 LEU A -4 0 SHEET 2 AA1 5 LYS B 49 PRO B 53 1 O LYS B 49 N ASP A -5 SHEET 3 AA1 5 LYS B 28 ARG B 35 -1 N VAL B 31 O PHE B 50 SHEET 4 AA1 5 LEU B 107 ALA B 112 1 O LEU B 107 N ILE B 32 SHEET 5 AA1 5 PHE B 78 LEU B 80 -1 N LEU B 80 O VAL B 110 SHEET 1 AA2 4 LYS A 49 PRO A 53 0 SHEET 2 AA2 4 LYS A 28 ARG A 35 -1 N VAL A 31 O PHE A 50 SHEET 3 AA2 4 LEU A 107 ALA A 112 1 O LEU A 107 N ILE A 32 SHEET 4 AA2 4 PHE A 78 LEU A 80 -1 N LEU A 80 O VAL A 110 SHEET 1 AA3 5 LYS C 49 PRO C 53 0 SHEET 2 AA3 5 LYS C 28 ARG C 35 -1 N ILE C 29 O VAL C 52 SHEET 3 AA3 5 LEU C 107 ALA C 112 1 O MET C 109 N ILE C 32 SHEET 4 AA3 5 PHE C 78 VAL C 81 -1 N LEU C 80 O VAL C 110 SHEET 5 AA3 5 HIS C 84 SER C 85 -1 O HIS C 84 N VAL C 81 SHEET 1 AA4 5 LYS D 49 PRO D 53 0 SHEET 2 AA4 5 LYS D 28 ARG D 35 -1 N ILE D 29 O VAL D 52 SHEET 3 AA4 5 LEU D 107 ALA D 112 1 O LEU D 107 N ILE D 32 SHEET 4 AA4 5 PHE D 78 VAL D 81 -1 N LEU D 80 O VAL D 110 SHEET 5 AA4 5 HIS D 84 SER D 85 -1 O HIS D 84 N VAL D 81 CRYST1 41.720 53.447 61.584 77.15 73.18 85.05 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023969 -0.002076 -0.006969 0.00000 SCALE2 0.000000 0.018780 -0.003974 0.00000 SCALE3 0.000000 0.000000 0.017340 0.00000