HEADER PROTON TRANSPORT 30-MAR-17 5XDZ TITLE CRYSTAL STRUCTURE OF ZEBRAFISH SNX25 PX DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TRAFFICKING PROTEIN; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: UNP RESIDUES 633-751; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CELLULAR TRAFFICKING PROTEIN; COMPND 8 CHAIN: A; COMPND 9 FRAGMENT: UNP RESIDUES 633-751; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: SNX25; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 11 ORGANISM_COMMON: ZEBRAFISH; SOURCE 12 ORGANISM_TAXID: 7955; SOURCE 13 GENE: SNX25; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS SORTING NEXIN, PX DOMAIN, PROTON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR K.SU,Y.ZHANG,J.XU,J.LIU REVDAT 4 22-NOV-23 5XDZ 1 REMARK REVDAT 3 30-AUG-17 5XDZ 1 REMARK REVDAT 2 26-JUL-17 5XDZ 1 JRNL REVDAT 1 14-JUN-17 5XDZ 0 JRNL AUTH K.SU,T.XU,Z.YU,J.ZHU,Y.ZHANG,M.WU,Y.XIONG,J.LIU,J.XU JRNL TITL STRUCTURE OF THE PX DOMAIN OF SNX25 REVEALS A NOVEL JRNL TITL 2 PHOSPHOLIPID RECOGNITION MODEL BY DIMERIZATION IN THE PX JRNL TITL 3 DOMAIN JRNL REF FEBS LETT. V. 591 2011 2017 JRNL REFN ISSN 1873-3468 JRNL PMID 28542875 JRNL DOI 10.1002/1873-3468.12688 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 23023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.6517 - 3.3998 0.96 2841 157 0.1800 0.2252 REMARK 3 2 3.3998 - 2.6985 0.98 2736 151 0.1915 0.2381 REMARK 3 3 2.6985 - 2.3574 0.99 2768 136 0.1926 0.2465 REMARK 3 4 2.3574 - 2.1419 0.98 2710 130 0.1849 0.2240 REMARK 3 5 2.1419 - 1.9883 0.99 2716 137 0.1796 0.2293 REMARK 3 6 1.9883 - 1.8711 0.99 2712 160 0.1965 0.2410 REMARK 3 7 1.8711 - 1.7774 0.99 2702 142 0.2130 0.2689 REMARK 3 8 1.7774 - 1.7000 0.99 2687 138 0.2331 0.3373 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1873 REMARK 3 ANGLE : 1.346 2532 REMARK 3 CHIRALITY : 0.055 291 REMARK 3 PLANARITY : 0.008 318 REMARK 3 DIHEDRAL : 17.190 709 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 632 THROUGH 649 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9960 -10.7829 7.8629 REMARK 3 T TENSOR REMARK 3 T11: 0.1892 T22: 0.1546 REMARK 3 T33: 0.2688 T12: -0.0048 REMARK 3 T13: -0.0870 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.8124 L22: 0.7643 REMARK 3 L33: 1.6901 L12: -0.4554 REMARK 3 L13: -0.9141 L23: -0.1439 REMARK 3 S TENSOR REMARK 3 S11: 0.2705 S12: 0.2229 S13: -0.3046 REMARK 3 S21: 0.4702 S22: 0.0912 S23: -0.1337 REMARK 3 S31: 0.5186 S32: 0.1382 S33: 0.0144 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 650 THROUGH 672 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1411 -9.2370 9.6658 REMARK 3 T TENSOR REMARK 3 T11: 0.0988 T22: 0.1024 REMARK 3 T33: 0.1578 T12: -0.0233 REMARK 3 T13: -0.0620 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.8217 L22: 2.4638 REMARK 3 L33: 3.3735 L12: -1.3089 REMARK 3 L13: 0.7083 L23: 0.0035 REMARK 3 S TENSOR REMARK 3 S11: 0.2607 S12: -0.0699 S13: -0.2735 REMARK 3 S21: 0.2693 S22: -0.0639 S23: -0.1532 REMARK 3 S31: 0.0125 S32: -0.0692 S33: 0.0966 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 673 THROUGH 693 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2463 -13.5186 1.5316 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.1275 REMARK 3 T33: 0.1485 T12: 0.0058 REMARK 3 T13: -0.0079 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.9760 L22: 2.0014 REMARK 3 L33: 1.0681 L12: 0.0716 REMARK 3 L13: 0.7038 L23: -0.7168 REMARK 3 S TENSOR REMARK 3 S11: 0.0826 S12: 0.1295 S13: -0.1279 REMARK 3 S21: -0.1932 S22: -0.0083 S23: -0.1093 REMARK 3 S31: 0.2475 S32: 0.2823 S33: 0.0005 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 694 THROUGH 714 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2721 -4.7092 -5.8322 REMARK 3 T TENSOR REMARK 3 T11: 0.3983 T22: 0.3597 REMARK 3 T33: 0.0482 T12: -0.1284 REMARK 3 T13: -0.0530 T23: 0.1076 REMARK 3 L TENSOR REMARK 3 L11: 1.9298 L22: 3.3338 REMARK 3 L33: 2.8388 L12: -0.0714 REMARK 3 L13: -0.0010 L23: 1.5313 REMARK 3 S TENSOR REMARK 3 S11: -0.0958 S12: 0.5645 S13: 0.7093 REMARK 3 S21: -1.5773 S22: 0.4229 S23: -0.2906 REMARK 3 S31: -0.6499 S32: 1.0314 S33: 0.7894 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 715 THROUGH 733 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8724 -2.2356 1.1098 REMARK 3 T TENSOR REMARK 3 T11: 0.1716 T22: 0.1475 REMARK 3 T33: 0.1372 T12: 0.0081 REMARK 3 T13: 0.0001 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.1579 L22: 0.8914 REMARK 3 L33: 1.7796 L12: -0.8055 REMARK 3 L13: -0.5146 L23: -0.3869 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: 0.1759 S13: 0.2090 REMARK 3 S21: -0.1514 S22: 0.0068 S23: 0.1534 REMARK 3 S31: -0.4266 S32: 0.0595 S33: -0.0007 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 734 THROUGH 741 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1262 -17.7246 -4.3107 REMARK 3 T TENSOR REMARK 3 T11: 0.3388 T22: 0.4163 REMARK 3 T33: 0.3876 T12: -0.0439 REMARK 3 T13: -0.1164 T23: -0.0722 REMARK 3 L TENSOR REMARK 3 L11: 0.1913 L22: 0.5526 REMARK 3 L33: 0.2563 L12: -0.2850 REMARK 3 L13: 0.0878 L23: 0.0719 REMARK 3 S TENSOR REMARK 3 S11: 0.1784 S12: 0.0755 S13: -0.3442 REMARK 3 S21: -0.1302 S22: -0.4034 S23: 1.2819 REMARK 3 S31: 0.0676 S32: -0.6267 S33: -0.0046 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 742 THROUGH 753 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8334 -19.6609 7.8199 REMARK 3 T TENSOR REMARK 3 T11: 0.2015 T22: 0.1627 REMARK 3 T33: 0.1267 T12: -0.0114 REMARK 3 T13: -0.0031 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.3430 L22: 0.6212 REMARK 3 L33: 0.6088 L12: -0.0624 REMARK 3 L13: -0.4540 L23: -0.1117 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: -0.0824 S13: -0.0341 REMARK 3 S21: -0.1080 S22: -0.2226 S23: 0.0812 REMARK 3 S31: 0.0639 S32: 0.1095 S33: -0.0013 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 633 THROUGH 648 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5910 -34.6596 12.8419 REMARK 3 T TENSOR REMARK 3 T11: 0.2854 T22: 0.3060 REMARK 3 T33: 0.3212 T12: 0.0300 REMARK 3 T13: 0.0443 T23: -0.0496 REMARK 3 L TENSOR REMARK 3 L11: 0.9143 L22: 1.2429 REMARK 3 L33: 1.7211 L12: -0.7274 REMARK 3 L13: 0.4457 L23: -0.3492 REMARK 3 S TENSOR REMARK 3 S11: 0.5607 S12: 0.5427 S13: -0.4794 REMARK 3 S21: -0.5300 S22: -0.3888 S23: 0.4913 REMARK 3 S31: -0.0225 S32: -0.2337 S33: 0.0177 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 649 THROUGH 672 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6814 -33.5070 11.5782 REMARK 3 T TENSOR REMARK 3 T11: 0.1250 T22: 0.1399 REMARK 3 T33: 0.3446 T12: -0.0074 REMARK 3 T13: 0.0142 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.0949 L22: 1.6592 REMARK 3 L33: 2.8164 L12: 0.2565 REMARK 3 L13: -0.3623 L23: -0.0921 REMARK 3 S TENSOR REMARK 3 S11: -0.0672 S12: 0.1511 S13: 1.0626 REMARK 3 S21: -0.7642 S22: 0.0035 S23: -0.3156 REMARK 3 S31: -0.0705 S32: 0.1391 S33: 0.0189 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 673 THROUGH 699 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8351 -29.1581 22.0589 REMARK 3 T TENSOR REMARK 3 T11: 0.2363 T22: 0.1449 REMARK 3 T33: 0.1463 T12: 0.0373 REMARK 3 T13: -0.0208 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 2.8854 L22: 2.5440 REMARK 3 L33: 0.5994 L12: -0.6708 REMARK 3 L13: -0.0897 L23: -0.0408 REMARK 3 S TENSOR REMARK 3 S11: -0.2392 S12: -0.2939 S13: -0.0083 REMARK 3 S21: 0.5821 S22: 0.1466 S23: -0.0247 REMARK 3 S31: 0.1946 S32: 0.0853 S33: 0.0009 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 700 THROUGH 752 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6478 -34.4253 19.9647 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.1736 REMARK 3 T33: 0.1548 T12: 0.0039 REMARK 3 T13: 0.0431 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 2.1262 L22: 2.3965 REMARK 3 L33: 1.8094 L12: -0.2498 REMARK 3 L13: 1.7015 L23: -0.0486 REMARK 3 S TENSOR REMARK 3 S11: 0.0660 S12: -0.1522 S13: -0.3817 REMARK 3 S21: 0.1375 S22: 0.0403 S23: 0.1780 REMARK 3 S31: 0.0345 S32: 0.0280 S33: 0.0061 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23068 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 68.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.27600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4PQO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M SODIUM CITRATE TRIBASIC DIHYDRATE REMARK 280 PH 6.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.07500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.41500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.07500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.41500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL B 802 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 666 REMARK 465 ASP B 667 REMARK 465 ASP B 668 REMARK 465 CYS B 669 REMARK 465 LYS B 670 REMARK 465 LEU B 708 REMARK 465 PRO B 709 REMARK 465 PHE B 710 REMARK 465 LYS B 711 REMARK 465 GLY A 651 REMARK 465 GLU A 666 REMARK 465 ASP A 667 REMARK 465 ASP A 668 REMARK 465 CYS A 669 REMARK 465 LYS A 670 REMARK 465 ASN A 671 REMARK 465 GLU A 753 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 734 O HOH A 901 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 693 CB CYS A 693 SG -0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 642 -69.15 -104.38 REMARK 500 ASN B 672 47.02 -105.05 REMARK 500 LEU B 705 36.73 -94.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 801 DBREF 5XDZ B 633 751 UNP C6K2H9 C6K2H9_DANRE 633 751 DBREF 5XDZ A 633 751 UNP C6K2H9 C6K2H9_DANRE 633 751 SEQADV 5XDZ MET B 632 UNP C6K2H9 INITIATING METHIONINE SEQADV 5XDZ LEU B 752 UNP C6K2H9 EXPRESSION TAG SEQADV 5XDZ GLU B 753 UNP C6K2H9 EXPRESSION TAG SEQADV 5XDZ LEU A 752 UNP C6K2H9 EXPRESSION TAG SEQADV 5XDZ GLU A 753 UNP C6K2H9 EXPRESSION TAG SEQRES 1 B 122 MET ASN LEU GLY THR TRP ARG ALA VAL VAL SER THR ALA SEQRES 2 B 122 GLU ALA SER GLU GLU ASN GLY GLU GLN MET ALA CYS TYR SEQRES 3 B 122 PHE VAL ALA VAL SER LEU SER GLU GLU ASP ASP CYS LYS SEQRES 4 B 122 ASN ASN HIS TRP THR VAL SER ARG LYS LEU ILE GLU PHE SEQRES 5 B 122 GLN ALA LEU HIS ARG LYS LEU THR GLU CYS PHE PRO SER SEQRES 6 B 122 LEU LYS LYS VAL GLN LEU PRO SER LEU SER LYS LEU PRO SEQRES 7 B 122 PHE LYS SER ILE ASP GLN LYS PHE LEU ASP LYS SER LYS SEQRES 8 B 122 ASN GLN LEU ASN ALA PHE LEU GLN LYS VAL LEU THR ASP SEQRES 9 B 122 GLU ARG MET CYS GLN SER GLU ALA LEU TYR ALA PHE LEU SEQRES 10 B 122 SER PRO SER LEU GLU SEQRES 1 A 121 ASN LEU GLY THR TRP ARG ALA VAL VAL SER THR ALA GLU SEQRES 2 A 121 ALA SER GLU GLU ASN GLY GLU GLN MET ALA CYS TYR PHE SEQRES 3 A 121 VAL ALA VAL SER LEU SER GLU GLU ASP ASP CYS LYS ASN SEQRES 4 A 121 ASN HIS TRP THR VAL SER ARG LYS LEU ILE GLU PHE GLN SEQRES 5 A 121 ALA LEU HIS ARG LYS LEU THR GLU CYS PHE PRO SER LEU SEQRES 6 A 121 LYS LYS VAL GLN LEU PRO SER LEU SER LYS LEU PRO PHE SEQRES 7 A 121 LYS SER ILE ASP GLN LYS PHE LEU ASP LYS SER LYS ASN SEQRES 8 A 121 GLN LEU ASN ALA PHE LEU GLN LYS VAL LEU THR ASP GLU SEQRES 9 A 121 ARG MET CYS GLN SER GLU ALA LEU TYR ALA PHE LEU SER SEQRES 10 A 121 PRO SER LEU GLU HET NA B 801 1 HET CL B 802 1 HET NA A 801 1 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 3 NA 2(NA 1+) FORMUL 4 CL CL 1- FORMUL 6 HOH *76(H2 O) HELIX 1 AA1 LEU B 680 PHE B 694 1 15 HELIX 2 AA2 PRO B 695 VAL B 700 5 6 HELIX 3 AA3 ASP B 714 THR B 734 1 21 HELIX 4 AA4 SER B 741 SER B 749 1 9 HELIX 5 AA5 ASN A 633 GLY A 635 5 3 HELIX 6 AA6 LEU A 680 PHE A 694 1 15 HELIX 7 AA7 PRO A 695 VAL A 700 5 6 HELIX 8 AA8 ASP A 714 ASP A 735 1 22 HELIX 9 AA9 ARG A 737 GLN A 740 5 4 HELIX 10 AB1 SER A 741 SER A 749 1 9 SHEET 1 AA1 3 ARG B 638 VAL B 641 0 SHEET 2 AA1 3 GLU B 652 SER B 662 -1 O ALA B 660 N VAL B 640 SHEET 3 AA1 3 GLU B 645 GLU B 649 -1 N SER B 647 O MET B 654 SHEET 1 AA2 3 ARG B 638 VAL B 641 0 SHEET 2 AA2 3 GLU B 652 SER B 662 -1 O ALA B 660 N VAL B 640 SHEET 3 AA2 3 HIS B 673 LYS B 679 -1 O VAL B 676 N VAL B 659 SHEET 1 AA3 3 TRP A 637 GLU A 648 0 SHEET 2 AA3 3 GLN A 653 LEU A 663 -1 O SER A 662 N ARG A 638 SHEET 3 AA3 3 HIS A 673 LYS A 679 -1 O TRP A 674 N VAL A 661 LINK NA NA A 801 O HOH A 926 1555 1555 2.73 SITE 1 AC1 4 MET B 654 ALA B 655 LEU B 680 ILE B 681 SITE 1 AC2 3 ASN B 723 ASN B 726 HOH B 941 SITE 1 AC3 5 ALA A 655 LYS A 679 LEU A 680 ILE A 681 SITE 2 AC3 5 HOH A 926 CRYST1 68.150 82.830 36.500 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014674 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027397 0.00000