HEADER ELECTRON TRANSPORT 04-APR-17 5XED TITLE HETERODIMER CONSTRUCTED FROM M61A PA CYT C551-HT CYT C552 AND HT CYT TITLE 2 C552-PA CYT C551 CHIMERIC PROTEINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C-551,CYTOCHROME C-552; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 23-42,UNP RESIDUES 37-98; COMPND 5 SYNONYM: CYTOCHROME C8,CYTOCHROME C551,CYTOCHROME C552; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: THE CHIMERIC PROTEIN OF CYTOCHROME C-551 (23-42) AND COMPND 9 CYTOCHROME C-552 (37-98); COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: CYTOCHROME C-552,CYTOCHROME C-551; COMPND 12 CHAIN: C; COMPND 13 FRAGMENT: UNP RESIDUES 19-36,UNP RESIDUES 43-104; COMPND 14 SYNONYM: CYTOCHROME C552,CYTOCHROME C8,CYTOCHROME C551; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: THE CHIMERIC PROTEIN OF CYTOCHROME C-552 (19-36) AND COMPND 17 CYTOCHROME C-551 (43-104) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA, HYDROGENOBACTER SOURCE 3 THERMOPHILUS; SOURCE 4 ORGANISM_TAXID: 208964, 608538; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1, DSM 6534 / IAM 12695 / TK-6; SOURCE 7 GENE: NIRM, PA0518, HTH_0988, HYDTH_0984; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: JCB387; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HYDROGENOBACTER THERMOPHILUS, PSEUDOMONAS SOURCE 13 AERUGINOSA; SOURCE 14 ORGANISM_TAXID: 608538, 208964; SOURCE 15 STRAIN: DSM 6534 / IAM 12695 / TK-6, ATCC 15692 / DSM 22644 / CIP SOURCE 16 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1; SOURCE 17 GENE: HTH_0988, HYDTH_0984, NIRM, PA0518; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHIMERIC PROTEIN, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.ZHANG,T.NAKANISHI,M.YAMANAKA,S.NAGAO,S.YANAGISAWA,Y.SHOMURA, AUTHOR 2 N.SHIBATA,T.OGURA,Y.HIGUCHI,S.HIROTA REVDAT 3 22-NOV-23 5XED 1 REMARK REVDAT 2 06-DEC-17 5XED 1 JRNL REVDAT 1 09-AUG-17 5XED 0 JRNL AUTH M.ZHANG,T.NAKANISHI,M.YAMANAKA,S.NAGAO,S.YANAGISAWA, JRNL AUTH 2 Y.SHOMURA,N.SHIBATA,T.OGURA,Y.HIGUCHI,S.HIROTA JRNL TITL RATIONAL DESIGN OF DOMAIN-SWAPPING-BASED C-TYPE CYTOCHROME JRNL TITL 2 HETERODIMERS BY USING CHIMERIC PROTEINS. JRNL REF CHEMBIOCHEM V. 18 1712 2017 JRNL REFN ESSN 1439-7633 JRNL PMID 28660650 JRNL DOI 10.1002/CBIC.201700219 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 19118 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 979 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1078 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1208 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.347 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1332 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1277 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1828 ; 1.993 ; 2.166 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2948 ; 0.922 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 160 ; 6.428 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 46 ;39.841 ;26.522 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 216 ;15.403 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 6.885 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 178 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1516 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 254 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 646 ; 0.794 ; 0.832 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 645 ; 0.794 ; 0.831 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 804 ; 1.282 ; 1.245 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 805 ; 1.281 ; 1.246 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 686 ; 1.260 ; 1.004 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 682 ; 1.256 ; 1.003 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1023 ; 1.962 ; 1.439 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1651 ; 3.427 ; 7.483 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1629 ; 3.386 ; 7.357 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 8 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1110 -2.1399 -1.7225 REMARK 3 T TENSOR REMARK 3 T11: 0.1616 T22: 0.1605 REMARK 3 T33: 0.1423 T12: 0.0349 REMARK 3 T13: -0.0127 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 4.5812 L22: 5.6230 REMARK 3 L33: 11.5922 L12: -1.2958 REMARK 3 L13: -1.4093 L23: 0.0641 REMARK 3 S TENSOR REMARK 3 S11: 0.0581 S12: 0.5363 S13: -0.4053 REMARK 3 S21: 0.0151 S22: -0.0171 S23: -0.1157 REMARK 3 S31: 0.3504 S32: 0.0190 S33: -0.0410 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0647 0.4289 6.8294 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.0088 REMARK 3 T33: 0.0550 T12: -0.0178 REMARK 3 T13: -0.0218 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 8.4237 L22: 2.4887 REMARK 3 L33: 3.4268 L12: 0.4698 REMARK 3 L13: 0.6491 L23: -0.9058 REMARK 3 S TENSOR REMARK 3 S11: 0.1219 S12: 0.1776 S13: -0.2983 REMARK 3 S21: -0.0131 S22: -0.0172 S23: -0.0473 REMARK 3 S31: 0.3595 S32: -0.0627 S33: -0.1047 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): 1.0510 -4.4951 21.8974 REMARK 3 T TENSOR REMARK 3 T11: 0.0155 T22: 0.0243 REMARK 3 T33: 0.0822 T12: -0.0169 REMARK 3 T13: 0.0054 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 2.7591 L22: 4.3364 REMARK 3 L33: 7.9603 L12: -1.8163 REMARK 3 L13: 1.7190 L23: -3.0522 REMARK 3 S TENSOR REMARK 3 S11: -0.0476 S12: -0.0447 S13: 0.1739 REMARK 3 S21: 0.0266 S22: -0.0366 S23: -0.2528 REMARK 3 S31: -0.2303 S32: 0.2241 S33: 0.0842 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1335 -11.6159 33.1667 REMARK 3 T TENSOR REMARK 3 T11: 0.0999 T22: 0.0945 REMARK 3 T33: 0.0688 T12: 0.0081 REMARK 3 T13: 0.0044 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 3.0746 L22: 0.4851 REMARK 3 L33: 6.5287 L12: 0.1601 REMARK 3 L13: 2.7126 L23: 0.5030 REMARK 3 S TENSOR REMARK 3 S11: 0.1311 S12: -0.2834 S13: -0.0449 REMARK 3 S21: 0.1395 S22: -0.0248 S23: -0.0341 REMARK 3 S31: 0.1340 S32: 0.0309 S33: -0.1064 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4276 -2.4354 23.8228 REMARK 3 T TENSOR REMARK 3 T11: 0.3061 T22: 0.0543 REMARK 3 T33: 0.1017 T12: 0.0568 REMARK 3 T13: -0.0913 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 5.0405 L22: 5.5699 REMARK 3 L33: 0.9446 L12: 1.8236 REMARK 3 L13: -1.5454 L23: -0.3598 REMARK 3 S TENSOR REMARK 3 S11: -0.1595 S12: -0.0855 S13: 0.6098 REMARK 3 S21: 0.1792 S22: 0.2437 S23: 0.3337 REMARK 3 S31: -0.3079 S32: -0.0205 S33: -0.0842 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8868 -12.4955 19.5045 REMARK 3 T TENSOR REMARK 3 T11: 0.0144 T22: 0.0195 REMARK 3 T33: 0.0334 T12: 0.0028 REMARK 3 T13: -0.0126 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 4.0004 L22: 3.2496 REMARK 3 L33: 1.0599 L12: 0.7940 REMARK 3 L13: -0.3941 L23: -0.7219 REMARK 3 S TENSOR REMARK 3 S11: -0.0978 S12: 0.1374 S13: -0.1350 REMARK 3 S21: -0.1714 S22: 0.0238 S23: 0.1934 REMARK 3 S31: -0.0085 S32: -0.1268 S33: 0.0740 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8107 -12.4853 22.5446 REMARK 3 T TENSOR REMARK 3 T11: 0.0398 T22: 0.0643 REMARK 3 T33: 0.0604 T12: -0.0181 REMARK 3 T13: -0.0157 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 7.2314 L22: 1.7435 REMARK 3 L33: 1.1768 L12: 0.9462 REMARK 3 L13: -1.4793 L23: 0.9838 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: -0.1347 S13: 0.0983 REMARK 3 S21: -0.0572 S22: 0.0873 S23: -0.1029 REMARK 3 S31: -0.0566 S32: 0.1335 S33: -0.0817 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 19 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7389 -9.5448 12.1858 REMARK 3 T TENSOR REMARK 3 T11: 0.0556 T22: 0.0842 REMARK 3 T33: 0.1031 T12: 0.0335 REMARK 3 T13: 0.0433 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 4.1586 L22: 5.2582 REMARK 3 L33: 4.0391 L12: 2.4673 REMARK 3 L13: 1.6243 L23: 0.8198 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: 0.5129 S13: -0.4435 REMARK 3 S21: -0.3382 S22: 0.0830 S23: -0.6036 REMARK 3 S31: 0.2981 S32: 0.3568 S33: -0.0806 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 20 C 31 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2823 6.8299 6.0101 REMARK 3 T TENSOR REMARK 3 T11: 0.0183 T22: 0.0467 REMARK 3 T33: 0.0627 T12: -0.0277 REMARK 3 T13: -0.0008 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 3.0193 L22: 1.6754 REMARK 3 L33: 8.6674 L12: -1.2547 REMARK 3 L13: 1.3019 L23: -1.1123 REMARK 3 S TENSOR REMARK 3 S11: 0.0592 S12: -0.0875 S13: -0.3264 REMARK 3 S21: -0.0562 S22: 0.0250 S23: 0.1356 REMARK 3 S31: 0.1760 S32: -0.1506 S33: -0.0842 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 32 C 40 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2839 17.0050 -2.6388 REMARK 3 T TENSOR REMARK 3 T11: 0.1607 T22: 0.0796 REMARK 3 T33: 0.0545 T12: -0.0151 REMARK 3 T13: -0.0185 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 12.4589 L22: 4.1054 REMARK 3 L33: 4.8279 L12: 1.7246 REMARK 3 L13: 4.5172 L23: -2.8859 REMARK 3 S TENSOR REMARK 3 S11: -0.0764 S12: 0.0029 S13: 0.2632 REMARK 3 S21: 0.3737 S22: -0.1248 S23: -0.0676 REMARK 3 S31: -0.3943 S32: 0.1229 S33: 0.2012 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 41 C 47 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8083 13.9146 3.2343 REMARK 3 T TENSOR REMARK 3 T11: 0.0714 T22: 0.1001 REMARK 3 T33: 0.1296 T12: 0.0213 REMARK 3 T13: 0.0661 T23: 0.0492 REMARK 3 L TENSOR REMARK 3 L11: 6.8864 L22: 8.2586 REMARK 3 L33: 12.9003 L12: 4.7476 REMARK 3 L13: 4.8004 L23: -3.5809 REMARK 3 S TENSOR REMARK 3 S11: -0.3317 S12: 0.2151 S13: 0.2644 REMARK 3 S21: -0.1631 S22: 0.0632 S23: 0.0774 REMARK 3 S31: -0.3543 S32: 0.2254 S33: 0.2685 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 48 C 63 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3356 11.4232 12.4064 REMARK 3 T TENSOR REMARK 3 T11: 0.0227 T22: 0.0342 REMARK 3 T33: 0.0416 T12: 0.0082 REMARK 3 T13: -0.0041 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 8.6159 L22: 1.8765 REMARK 3 L33: 3.6905 L12: 1.0176 REMARK 3 L13: -1.9462 L23: -0.5604 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: -0.4874 S13: -0.2125 REMARK 3 S21: 0.1898 S22: -0.0088 S23: -0.0103 REMARK 3 S31: 0.0082 S32: 0.2311 S33: 0.0316 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 64 C 72 REMARK 3 ORIGIN FOR THE GROUP (A): 24.5874 7.7426 -2.2882 REMARK 3 T TENSOR REMARK 3 T11: 0.2442 T22: 0.2865 REMARK 3 T33: 0.2083 T12: 0.0204 REMARK 3 T13: 0.0775 T23: -0.0877 REMARK 3 L TENSOR REMARK 3 L11: 12.0984 L22: 1.2376 REMARK 3 L33: 3.7390 L12: 3.5401 REMARK 3 L13: 4.6252 L23: 1.9792 REMARK 3 S TENSOR REMARK 3 S11: -0.0970 S12: 0.8230 S13: -0.1547 REMARK 3 S21: -0.0453 S22: 0.2667 S23: -0.1017 REMARK 3 S31: -0.0080 S32: 0.3531 S33: -0.1697 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 73 C 80 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3455 6.6651 -3.7215 REMARK 3 T TENSOR REMARK 3 T11: 0.0910 T22: 0.0795 REMARK 3 T33: 0.0238 T12: 0.0035 REMARK 3 T13: -0.0130 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 10.8818 L22: 7.3688 REMARK 3 L33: 5.2908 L12: 3.3731 REMARK 3 L13: -0.3348 L23: -0.5174 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: 0.5830 S13: -0.0206 REMARK 3 S21: -0.2947 S22: -0.0130 S23: 0.0948 REMARK 3 S31: -0.0174 S32: -0.0537 S33: 0.0243 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-APR-17. REMARK 100 THE DEPOSITION ID IS D_1300003313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21840 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.53300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 351C, 1YNR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES CONTAINING 25% W/V PEG REMARK 280 6000, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.95600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS C 13 CAC HEC C 102 2.13 REMARK 500 SG CYS A 15 CAC HEC C 101 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 101 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 16 NE2 REMARK 620 2 HEC C 101 NA 87.6 REMARK 620 3 HEC C 101 NB 86.0 90.6 REMARK 620 4 HEC C 101 NC 89.2 176.5 87.7 REMARK 620 5 HEC C 101 ND 92.2 90.1 178.0 91.5 REMARK 620 6 MET C 59 SD 173.1 91.5 87.2 91.4 94.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 102 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 14 NE2 REMARK 620 2 HEC C 102 NA 88.0 REMARK 620 3 HEC C 102 NB 89.8 90.8 REMARK 620 4 HEC C 102 NC 89.7 177.7 89.7 REMARK 620 5 HEC C 102 ND 89.3 90.2 178.7 89.3 REMARK 620 6 HOH C 220 O 178.4 91.5 88.7 90.8 92.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC C 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XEC RELATED DB: PDB DBREF 5XED A 1 20 UNP P00099 CY551_PSEAE 23 42 DBREF 5XED A 21 82 UNP P15452 CY552_HYDTT 37 98 DBREF 5XED C 1 18 UNP P15452 CY552_HYDTT 19 36 DBREF 5XED C 19 80 UNP P00099 CY551_PSEAE 43 104 SEQADV 5XED ALA A 61 UNP P15452 MET 77 ENGINEERED MUTATION SEQRES 1 A 82 GLU ASP PRO GLU VAL LEU PHE LYS ASN LYS GLY CYS VAL SEQRES 2 A 82 ALA CYS HIS ALA ILE ASP THR LYS LYS VAL GLY PRO ALA SEQRES 3 A 82 TYR ALA ASP VAL ALA LYS LYS TYR ALA GLY ARG LYS ASP SEQRES 4 A 82 ALA VAL ASP TYR LEU ALA GLY LYS ILE LYS LYS GLY GLY SEQRES 5 A 82 SER GLY VAL TRP GLY SER VAL PRO ALA PRO PRO GLN ASN SEQRES 6 A 82 VAL THR ASP ALA GLU ALA LYS GLN LEU ALA GLN TRP ILE SEQRES 7 A 82 LEU SER ILE LYS SEQRES 1 C 80 ASN GLU GLN LEU ALA LYS GLN LYS GLY CYS MET ALA CYS SEQRES 2 C 80 HIS ASP LEU LYS ALA LYS MET VAL GLY PRO ALA TYR LYS SEQRES 3 C 80 ASP VAL ALA ALA LYS PHE ALA GLY GLN ALA GLY ALA GLU SEQRES 4 C 80 ALA GLU LEU ALA GLN ARG ILE LYS ASN GLY SER GLN GLY SEQRES 5 C 80 VAL TRP GLY PRO ILE PRO MET PRO PRO ASN ALA VAL SER SEQRES 6 C 80 ASP ASP GLU ALA GLN THR LEU ALA LYS TRP VAL LEU SER SEQRES 7 C 80 GLN LYS HET HEC C 101 43 HET HEC C 102 43 HETNAM HEC HEME C FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 5 HOH *67(H2 O) HELIX 1 AA1 ASP A 2 LYS A 10 1 9 HELIX 2 AA2 GLY A 11 CYS A 15 5 5 HELIX 3 AA3 ALA A 26 ALA A 35 1 10 HELIX 4 AA4 ASP A 39 GLY A 51 1 13 HELIX 5 AA5 THR A 67 ILE A 81 1 15 HELIX 6 AA6 GLU C 2 LYS C 8 1 7 HELIX 7 AA7 GLY C 9 CYS C 13 5 5 HELIX 8 AA8 ALA C 24 ALA C 33 1 10 HELIX 9 AA9 GLY C 37 GLY C 49 1 13 HELIX 10 AB1 SER C 65 SER C 78 1 14 LINK SG CYS A 12 CAB HEC C 101 1555 1555 1.85 LINK SG CYS C 10 CAB HEC C 102 1555 1555 1.76 LINK NE2 HIS A 16 FE HEC C 101 1555 1555 2.04 LINK NE2 HIS C 14 FE HEC C 102 1555 1555 2.02 LINK SD MET C 59 FE HEC C 101 1555 1555 2.29 LINK FE HEC C 102 O HOH C 220 1555 1555 2.00 SITE 1 AC1 20 GLY A 11 CYS A 12 CYS A 15 HIS A 16 SITE 2 AC1 20 VAL C 21 PRO C 23 TYR C 25 ARG C 45 SITE 3 AC1 20 SER C 50 GLN C 51 GLY C 52 VAL C 53 SITE 4 AC1 20 TRP C 54 GLY C 55 ILE C 57 MET C 59 SITE 5 AC1 20 ASN C 62 HOH C 201 HOH C 202 HOH C 203 SITE 1 AC2 20 PRO A 25 TYR A 27 TYR A 34 TYR A 43 SITE 2 AC2 20 ILE A 48 GLY A 52 SER A 53 GLY A 54 SITE 3 AC2 20 VAL A 55 TRP A 56 GLY A 57 VAL A 59 SITE 4 AC2 20 ALA A 61 GLN A 64 HOH A 105 CYS C 10 SITE 5 AC2 20 CYS C 13 HIS C 14 HOH C 207 HOH C 220 CRYST1 32.088 65.912 35.380 90.00 103.72 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031164 0.000000 0.007606 0.00000 SCALE2 0.000000 0.015172 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029094 0.00000