HEADER HYDROLASE 11-APR-17 5XG0 TITLE CRYSTAL STRUCTURE OF A NOVEL PET HYDROLASE FROM IDEONELLA SAKAIENSIS TITLE 2 201-F6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(ETHYLENE TEREPHTHALATE) HYDROLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 30-290; COMPND 5 SYNONYM: PETASE; COMPND 6 EC: 3.1.1.101; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: IDEONELLA SAKAIENSIS (STRAIN 201-F6); SOURCE 3 ORGANISM_TAXID: 1547922; SOURCE 4 STRAIN: 201-F6; SOURCE 5 GENE: ISF6_4831; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS METAL-BINDING, SUBSTRATE BINDING, ACIDOCALCISOMAL PYROPHOSPHATASE, KEYWDS 2 INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.HAN,W.D.LIU,Y.Y.ZHENG,C.C.CHEN,R.T.GUO REVDAT 4 22-NOV-23 5XG0 1 REMARK REVDAT 3 25-DEC-19 5XG0 1 REMARK REVDAT 2 27-DEC-17 5XG0 1 JRNL REVDAT 1 20-DEC-17 5XG0 0 JRNL AUTH X.HAN,W.LIU,J.W.HUANG,J.MA,Y.ZHENG,T.P.KO,L.XU,Y.S.CHENG, JRNL AUTH 2 C.C.CHEN,R.T.GUO JRNL TITL STRUCTURAL INSIGHT INTO CATALYTIC MECHANISM OF PET HYDROLASE JRNL REF NAT COMMUN V. 8 2106 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29235460 JRNL DOI 10.1038/S41467-017-02255-Z REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 88161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4552 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6285 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.1330 REMARK 3 BIN FREE R VALUE SET COUNT : 337 REMARK 3 BIN FREE R VALUE : 0.1870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5813 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 1124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.085 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5954 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5237 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8113 ; 1.507 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12185 ; 0.834 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 790 ; 6.846 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 231 ;34.816 ;23.506 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 867 ;11.270 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;18.202 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 889 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6835 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1228 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5XG0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-APR-17. REMARK 100 THE DEPOSITION ID IS D_1300003445. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : HKL-2000, HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92787 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.07600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, PHASER REMARK 200 STARTING MODEL: 4WFI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POLYETHYLENE GLYCOL 6000, GLYCEROL, REMARK 280 MES, PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.74000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.52050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.60800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.52050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.74000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.60800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 ALA A -5 REMARK 465 GLY A -4 REMARK 465 ALA A -3 REMARK 465 GLY A -2 REMARK 465 GLY B -6 REMARK 465 ALA B -5 REMARK 465 GLY B -4 REMARK 465 ALA B -3 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 512 O HOH C 353 2554 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 96 CB SER B 96 OG -0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 103 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 103 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 44 40.44 -140.61 REMARK 500 THR A 59 -7.66 74.97 REMARK 500 SER A 131 -123.04 66.40 REMARK 500 SER A 185 -84.15 -136.60 REMARK 500 ASN B 44 40.03 -140.46 REMARK 500 THR B 59 -9.99 72.91 REMARK 500 SER B 131 -121.19 64.08 REMARK 500 SER B 185 -82.78 -128.42 REMARK 500 ASN C 44 47.87 -142.64 REMARK 500 THR C 59 -8.60 71.51 REMARK 500 SER C 131 -117.98 66.13 REMARK 500 SER C 185 -84.28 -126.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 662 DISTANCE = 6.27 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XFX RELATED DB: PDB REMARK 900 RELATED ID: 5XFZ RELATED DB: PDB REMARK 900 RELATED ID: 5XFY RELATED DB: PDB DBREF1 5XG0 A 1 261 UNP PETH_IDESA DBREF2 5XG0 A A0A0K8P6T7 30 290 DBREF1 5XG0 B 1 261 UNP PETH_IDESA DBREF2 5XG0 B A0A0K8P6T7 30 290 DBREF1 5XG0 C 1 261 UNP PETH_IDESA DBREF2 5XG0 C A0A0K8P6T7 30 290 SEQADV 5XG0 GLY A -6 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 ALA A -5 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 GLY A -4 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 ALA A -3 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 GLY A -2 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 ALA A -1 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 MET A 0 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 GLY B -6 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 ALA B -5 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 GLY B -4 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 ALA B -3 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 GLY B -2 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 ALA B -1 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 MET B 0 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 GLY C -6 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 ALA C -5 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 GLY C -4 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 ALA C -3 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 GLY C -2 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 ALA C -1 UNP A0A0K8P6T EXPRESSION TAG SEQADV 5XG0 MET C 0 UNP A0A0K8P6T EXPRESSION TAG SEQRES 1 A 268 GLY ALA GLY ALA GLY ALA MET ASN PRO TYR ALA ARG GLY SEQRES 2 A 268 PRO ASN PRO THR ALA ALA SER LEU GLU ALA SER ALA GLY SEQRES 3 A 268 PRO PHE THR VAL ARG SER PHE THR VAL SER ARG PRO SER SEQRES 4 A 268 GLY TYR GLY ALA GLY THR VAL TYR TYR PRO THR ASN ALA SEQRES 5 A 268 GLY GLY THR VAL GLY ALA ILE ALA ILE VAL PRO GLY TYR SEQRES 6 A 268 THR ALA ARG GLN SER SER ILE LYS TRP TRP GLY PRO ARG SEQRES 7 A 268 LEU ALA SER HIS GLY PHE VAL VAL ILE THR ILE ASP THR SEQRES 8 A 268 ASN SER THR LEU ASP GLN PRO SER SER ARG SER SER GLN SEQRES 9 A 268 GLN MET ALA ALA LEU ARG GLN VAL ALA SER LEU ASN GLY SEQRES 10 A 268 THR SER SER SER PRO ILE TYR GLY LYS VAL ASP THR ALA SEQRES 11 A 268 ARG MET GLY VAL MET GLY TRP SER MET GLY GLY GLY GLY SEQRES 12 A 268 SER LEU ILE SER ALA ALA ASN ASN PRO SER LEU LYS ALA SEQRES 13 A 268 ALA ALA PRO GLN ALA PRO TRP ASP SER SER THR ASN PHE SEQRES 14 A 268 SER SER VAL THR VAL PRO THR LEU ILE PHE ALA CYS GLU SEQRES 15 A 268 ASN ASP SER ILE ALA PRO VAL ASN SER SER ALA LEU PRO SEQRES 16 A 268 ILE TYR ASP SER MET SER ARG ASN ALA LYS GLN PHE LEU SEQRES 17 A 268 GLU ILE ASN GLY GLY SER HIS SER CYS ALA ASN SER GLY SEQRES 18 A 268 ASN SER ASN GLN ALA LEU ILE GLY LYS LYS GLY VAL ALA SEQRES 19 A 268 TRP MET LYS ARG PHE MET ASP ASN ASP THR ARG TYR SER SEQRES 20 A 268 THR PHE ALA CYS GLU ASN PRO ASN SER THR ARG VAL SER SEQRES 21 A 268 ASP PHE ARG THR ALA ASN CYS SER SEQRES 1 B 268 GLY ALA GLY ALA GLY ALA MET ASN PRO TYR ALA ARG GLY SEQRES 2 B 268 PRO ASN PRO THR ALA ALA SER LEU GLU ALA SER ALA GLY SEQRES 3 B 268 PRO PHE THR VAL ARG SER PHE THR VAL SER ARG PRO SER SEQRES 4 B 268 GLY TYR GLY ALA GLY THR VAL TYR TYR PRO THR ASN ALA SEQRES 5 B 268 GLY GLY THR VAL GLY ALA ILE ALA ILE VAL PRO GLY TYR SEQRES 6 B 268 THR ALA ARG GLN SER SER ILE LYS TRP TRP GLY PRO ARG SEQRES 7 B 268 LEU ALA SER HIS GLY PHE VAL VAL ILE THR ILE ASP THR SEQRES 8 B 268 ASN SER THR LEU ASP GLN PRO SER SER ARG SER SER GLN SEQRES 9 B 268 GLN MET ALA ALA LEU ARG GLN VAL ALA SER LEU ASN GLY SEQRES 10 B 268 THR SER SER SER PRO ILE TYR GLY LYS VAL ASP THR ALA SEQRES 11 B 268 ARG MET GLY VAL MET GLY TRP SER MET GLY GLY GLY GLY SEQRES 12 B 268 SER LEU ILE SER ALA ALA ASN ASN PRO SER LEU LYS ALA SEQRES 13 B 268 ALA ALA PRO GLN ALA PRO TRP ASP SER SER THR ASN PHE SEQRES 14 B 268 SER SER VAL THR VAL PRO THR LEU ILE PHE ALA CYS GLU SEQRES 15 B 268 ASN ASP SER ILE ALA PRO VAL ASN SER SER ALA LEU PRO SEQRES 16 B 268 ILE TYR ASP SER MET SER ARG ASN ALA LYS GLN PHE LEU SEQRES 17 B 268 GLU ILE ASN GLY GLY SER HIS SER CYS ALA ASN SER GLY SEQRES 18 B 268 ASN SER ASN GLN ALA LEU ILE GLY LYS LYS GLY VAL ALA SEQRES 19 B 268 TRP MET LYS ARG PHE MET ASP ASN ASP THR ARG TYR SER SEQRES 20 B 268 THR PHE ALA CYS GLU ASN PRO ASN SER THR ARG VAL SER SEQRES 21 B 268 ASP PHE ARG THR ALA ASN CYS SER SEQRES 1 C 268 GLY ALA GLY ALA GLY ALA MET ASN PRO TYR ALA ARG GLY SEQRES 2 C 268 PRO ASN PRO THR ALA ALA SER LEU GLU ALA SER ALA GLY SEQRES 3 C 268 PRO PHE THR VAL ARG SER PHE THR VAL SER ARG PRO SER SEQRES 4 C 268 GLY TYR GLY ALA GLY THR VAL TYR TYR PRO THR ASN ALA SEQRES 5 C 268 GLY GLY THR VAL GLY ALA ILE ALA ILE VAL PRO GLY TYR SEQRES 6 C 268 THR ALA ARG GLN SER SER ILE LYS TRP TRP GLY PRO ARG SEQRES 7 C 268 LEU ALA SER HIS GLY PHE VAL VAL ILE THR ILE ASP THR SEQRES 8 C 268 ASN SER THR LEU ASP GLN PRO SER SER ARG SER SER GLN SEQRES 9 C 268 GLN MET ALA ALA LEU ARG GLN VAL ALA SER LEU ASN GLY SEQRES 10 C 268 THR SER SER SER PRO ILE TYR GLY LYS VAL ASP THR ALA SEQRES 11 C 268 ARG MET GLY VAL MET GLY TRP SER MET GLY GLY GLY GLY SEQRES 12 C 268 SER LEU ILE SER ALA ALA ASN ASN PRO SER LEU LYS ALA SEQRES 13 C 268 ALA ALA PRO GLN ALA PRO TRP ASP SER SER THR ASN PHE SEQRES 14 C 268 SER SER VAL THR VAL PRO THR LEU ILE PHE ALA CYS GLU SEQRES 15 C 268 ASN ASP SER ILE ALA PRO VAL ASN SER SER ALA LEU PRO SEQRES 16 C 268 ILE TYR ASP SER MET SER ARG ASN ALA LYS GLN PHE LEU SEQRES 17 C 268 GLU ILE ASN GLY GLY SER HIS SER CYS ALA ASN SER GLY SEQRES 18 C 268 ASN SER ASN GLN ALA LEU ILE GLY LYS LYS GLY VAL ALA SEQRES 19 C 268 TRP MET LYS ARG PHE MET ASP ASN ASP THR ARG TYR SER SEQRES 20 C 268 THR PHE ALA CYS GLU ASN PRO ASN SER THR ARG VAL SER SEQRES 21 C 268 ASP PHE ARG THR ALA ASN CYS SER FORMUL 4 HOH *1124(H2 O) HELIX 1 AA1 THR A 10 ALA A 16 1 7 HELIX 2 AA2 ARG A 61 LYS A 66 5 6 HELIX 3 AA3 TRP A 67 PHE A 77 1 11 HELIX 4 AA4 GLN A 90 GLY A 110 1 21 HELIX 5 AA5 SER A 131 ASN A 144 1 14 HELIX 6 AA6 SER A 185 SER A 192 1 8 HELIX 7 AA7 ASN A 217 ASP A 234 1 18 HELIX 8 AA8 ASP A 236 ARG A 238 5 3 HELIX 9 AA9 TYR A 239 GLU A 245 1 7 HELIX 10 AB1 THR B 10 ALA B 16 1 7 HELIX 11 AB2 ARG B 61 LYS B 66 1 6 HELIX 12 AB3 TRP B 67 PHE B 77 1 11 HELIX 13 AB4 GLN B 90 GLY B 110 1 21 HELIX 14 AB5 SER B 131 ASN B 144 1 14 HELIX 15 AB6 SER B 185 MET B 193 1 9 HELIX 16 AB7 ASN B 217 ASP B 234 1 18 HELIX 17 AB8 ASP B 236 ARG B 238 5 3 HELIX 18 AB9 TYR B 239 GLU B 245 1 7 HELIX 19 AC1 THR C 10 ALA C 16 1 7 HELIX 20 AC2 ARG C 61 LYS C 66 5 6 HELIX 21 AC3 TRP C 67 PHE C 77 1 11 HELIX 22 AC4 GLN C 90 GLY C 110 1 21 HELIX 23 AC5 SER C 131 ASN C 144 1 14 HELIX 24 AC6 SER C 185 MET C 193 1 9 HELIX 25 AC7 ASN C 217 ASP C 234 1 18 HELIX 26 AC8 ASP C 236 ARG C 238 5 3 HELIX 27 AC9 TYR C 239 GLU C 245 1 7 SHEET 1 AA1 6 VAL A 23 THR A 27 0 SHEET 2 AA1 6 ALA A 36 PRO A 42 -1 O VAL A 39 N PHE A 26 SHEET 3 AA1 6 VAL A 78 ASP A 83 -1 O VAL A 79 N TYR A 40 SHEET 4 AA1 6 VAL A 49 VAL A 55 1 N ILE A 52 O ILE A 80 SHEET 5 AA1 6 VAL A 120 GLY A 129 1 O ASP A 121 N VAL A 49 SHEET 6 AA1 6 ALA A 149 ALA A 150 1 O ALA A 149 N VAL A 127 SHEET 1 AA2 3 THR A 169 CYS A 174 0 SHEET 2 AA2 3 LYS A 198 ILE A 203 1 O GLN A 199 N ILE A 171 SHEET 3 AA2 3 VAL A 252 ALA A 258 -1 O ASP A 254 N GLU A 202 SHEET 1 AA3 6 VAL B 23 THR B 27 0 SHEET 2 AA3 6 ALA B 36 PRO B 42 -1 O VAL B 39 N PHE B 26 SHEET 3 AA3 6 VAL B 78 ASP B 83 -1 O VAL B 79 N TYR B 40 SHEET 4 AA3 6 VAL B 49 VAL B 55 1 N ILE B 52 O ILE B 80 SHEET 5 AA3 6 VAL B 120 GLY B 129 1 O ASP B 121 N VAL B 49 SHEET 6 AA3 6 ALA B 149 ALA B 150 1 O ALA B 149 N VAL B 127 SHEET 1 AA4 3 THR B 169 CYS B 174 0 SHEET 2 AA4 3 LYS B 198 ILE B 203 1 O GLN B 199 N ILE B 171 SHEET 3 AA4 3 VAL B 252 ALA B 258 -1 O ASP B 254 N GLU B 202 SHEET 1 AA5 6 VAL C 23 THR C 27 0 SHEET 2 AA5 6 ALA C 36 PRO C 42 -1 O VAL C 39 N PHE C 26 SHEET 3 AA5 6 VAL C 78 ASP C 83 -1 O VAL C 79 N TYR C 40 SHEET 4 AA5 6 VAL C 49 VAL C 55 1 N ILE C 52 O ILE C 80 SHEET 5 AA5 6 VAL C 120 GLY C 129 1 O ASP C 121 N VAL C 49 SHEET 6 AA5 6 ALA C 149 ALA C 150 1 O ALA C 149 N VAL C 127 SHEET 1 AA6 3 THR C 169 CYS C 174 0 SHEET 2 AA6 3 LYS C 198 ILE C 203 1 O LEU C 201 N ALA C 173 SHEET 3 AA6 3 VAL C 252 ALA C 258 -1 O ARG C 256 N PHE C 200 SSBOND 1 CYS A 174 CYS A 210 1555 1555 2.04 SSBOND 2 CYS A 244 CYS A 260 1555 1555 2.05 SSBOND 3 CYS B 174 CYS B 210 1555 1555 2.05 SSBOND 4 CYS B 244 CYS B 260 1555 1555 2.06 SSBOND 5 CYS C 174 CYS C 210 1555 1555 2.06 SSBOND 6 CYS C 244 CYS C 260 1555 1555 2.05 CRYST1 63.480 69.216 153.041 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015753 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006534 0.00000