HEADER TRANSFERASE/RIBOSOMAL PROTEIN 27-APR-17 5XIS TITLE CRYSTAL STRUCTURE OF RNF168 UDM1 IN COMPLEX WITH LYS63-LINKED TITLE 2 DIUBIQUITIN, FORM I COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF168; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 110-188; COMPND 5 SYNONYM: HRNF168,RING FINGER PROTEIN 168,RING-TYPE E3 UBIQUITIN COMPND 6 TRANSFERASE RNF168; COMPND 7 EC: 2.3.2.27; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: UBIQUITIN-40S RIBOSOMAL PROTEIN S27A; COMPND 11 CHAIN: B, E; COMPND 12 SYNONYM: UBIQUITIN CARBOXYL EXTENSION PROTEIN 80; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: UBIQUITIN-40S RIBOSOMAL PROTEIN S27A; COMPND 16 CHAIN: C, F; COMPND 17 SYNONYM: UBIQUITIN CARBOXYL EXTENSION PROTEIN 80; COMPND 18 ENGINEERED: YES; COMPND 19 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF168; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCOLD-GST; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: RPS27A, UBA80, UBCEP1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET26B; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 23 ORGANISM_COMMON: MOUSE; SOURCE 24 ORGANISM_TAXID: 10090; SOURCE 25 GENE: RPS27A, UBA80, UBCEP1; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS UBIQUITIN, TRANSFERASE-RIBOSOMAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.S.TAKAHASHI,Y.SATO,S.FUKAI REVDAT 4 22-NOV-23 5XIS 1 HETSYN REVDAT 3 29-JUL-20 5XIS 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 28-MAR-18 5XIS 1 TITLE REVDAT 1 07-MAR-18 5XIS 0 JRNL AUTH T.S.TAKAHASHI,Y.HIRADE,A.TOMA,Y.SATO,A.YAMAGATA,S.GOTO-ITO, JRNL AUTH 2 A.TOMITA,S.NAKADA,S.FUKAI JRNL TITL STRUCTURAL INSIGHTS INTO TWO DISTINCT BINDING MODULES FOR JRNL TITL 2 LYS63-LINKED POLYUBIQUITIN CHAINS IN RNF168. JRNL REF NAT COMMUN V. 9 170 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29330428 JRNL DOI 10.1038/S41467-017-02345-Y REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 56375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2988 - 4.8292 0.95 2769 157 0.1654 0.1736 REMARK 3 2 4.8292 - 3.8338 0.92 2662 131 0.1583 0.1628 REMARK 3 3 3.8338 - 3.3494 0.96 2781 141 0.2078 0.2409 REMARK 3 4 3.3494 - 3.0433 0.91 2635 156 0.2338 0.2652 REMARK 3 5 3.0433 - 2.8252 0.94 2732 139 0.2497 0.3016 REMARK 3 6 2.8252 - 2.6586 0.95 2748 141 0.2534 0.2769 REMARK 3 7 2.6586 - 2.5255 0.96 2770 141 0.2510 0.3373 REMARK 3 8 2.5255 - 2.4156 0.89 2631 144 0.2552 0.2821 REMARK 3 9 2.4156 - 2.3226 0.92 2632 134 0.2499 0.2821 REMARK 3 10 2.3226 - 2.2425 0.94 2739 139 0.2499 0.2962 REMARK 3 11 2.2425 - 2.1723 0.94 2699 157 0.2556 0.2872 REMARK 3 12 2.1723 - 2.1102 0.94 2749 137 0.2660 0.3089 REMARK 3 13 2.1102 - 2.0547 0.94 2688 141 0.2643 0.3225 REMARK 3 14 2.0547 - 2.0046 0.88 2561 148 0.2685 0.2827 REMARK 3 15 2.0046 - 1.9590 0.91 2622 155 0.2810 0.2991 REMARK 3 16 1.9590 - 1.9173 0.93 2730 163 0.2924 0.3337 REMARK 3 17 1.9173 - 1.8790 0.92 2671 143 0.3078 0.3467 REMARK 3 18 1.8790 - 1.8435 0.93 2667 124 0.3120 0.3338 REMARK 3 19 1.8435 - 1.8106 0.92 2693 143 0.3287 0.3689 REMARK 3 20 1.8106 - 1.7799 0.82 2333 129 0.3414 0.3580 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3766 REMARK 3 ANGLE : 0.920 5046 REMARK 3 CHIRALITY : 0.058 575 REMARK 3 PLANARITY : 0.005 665 REMARK 3 DIHEDRAL : 11.448 3607 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XIS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300003597. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56388 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 32.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.66700 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2FID REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350, 0.1 M TRIS-HCL (PH 8.5), REMARK 280 100 MM MGCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 105 REMARK 465 PRO A 106 REMARK 465 GLY A 107 REMARK 465 HIS A 108 REMARK 465 MET A 109 REMARK 465 LEU B 73 REMARK 465 ARG B 74 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 465 ASP B 77 REMARK 465 GLY D 105 REMARK 465 PRO D 106 REMARK 465 ARG E 74 REMARK 465 GLY E 75 REMARK 465 GLY E 76 REMARK 465 ASP E 77 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 63 C GLY C 76 1.32 REMARK 500 NZ LYS E 63 C GLY F 76 1.33 REMARK 500 OG SER A 111 O HOH A 301 2.12 REMARK 500 NH1 ARG D 118 O HOH D 301 2.14 REMARK 500 O GLY C 76 O HOH C 201 2.17 REMARK 500 NH2 ARG F 54 O HOH F 101 2.18 REMARK 500 O HOH C 233 O HOH C 235 2.18 REMARK 500 OG SER D 111 O HOH D 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 74 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 113 109.44 -46.72 REMARK 500 GLU F 64 16.04 59.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG C 74 GLY C 75 146.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 122 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH E 123 DISTANCE = 7.00 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 32 OD1 REMARK 620 2 HOH B 205 O 85.8 REMARK 620 3 HOH B 208 O 86.0 92.8 REMARK 620 4 ASP F 32 OD1 94.9 91.5 175.7 REMARK 620 5 HOH F 130 O 171.1 88.3 87.7 91.9 REMARK 620 6 HOH F 134 O 94.0 177.0 84.2 91.4 91.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 32 OD1 REMARK 620 2 HOH C 217 O 88.5 REMARK 620 3 HOH C 221 O 79.4 91.2 REMARK 620 4 ASP E 32 OD1 85.6 173.0 84.0 REMARK 620 5 HOH E 107 O 88.4 82.9 166.6 100.7 REMARK 620 6 HOH E 112 O 170.8 86.2 93.2 99.2 98.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XIT RELATED DB: PDB REMARK 900 RELATED ID: 5XIU RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 ADDITIONAL C-TERMINAL RESIDUE DBREF 5XIS A 110 188 UNP Q8IYW5 RN168_HUMAN 110 188 DBREF 5XIS B 1 76 UNP P62983 RS27A_MOUSE 1 76 DBREF 5XIS C 1 76 UNP P62983 RS27A_MOUSE 1 76 DBREF 5XIS D 110 188 UNP Q8IYW5 RN168_HUMAN 110 188 DBREF 5XIS E 1 76 UNP P62983 RS27A_MOUSE 1 76 DBREF 5XIS F 1 76 UNP P62983 RS27A_MOUSE 1 76 SEQADV 5XIS GLY A 105 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIS PRO A 106 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIS GLY A 107 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIS HIS A 108 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIS MET A 109 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIS ASP B 77 UNP P62983 SEE SEQUENCE DETAILS SEQADV 5XIS ARG C 63 UNP P62983 LYS 63 ENGINEERED MUTATION SEQADV 5XIS GLY D 105 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIS PRO D 106 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIS GLY D 107 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIS HIS D 108 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIS MET D 109 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIS ASP E 77 UNP P62983 SEE SEQUENCE DETAILS SEQADV 5XIS ARG F 63 UNP P62983 LYS 63 ENGINEERED MUTATION SEQRES 1 A 84 GLY PRO GLY HIS MET LEU SER LYS PRO GLY GLU LEU ARG SEQRES 2 A 84 ARG GLU TYR GLU GLU GLU ILE SER LYS VAL ALA ALA GLU SEQRES 3 A 84 ARG ARG ALA SER GLU GLU GLU GLU ASN LYS ALA SER GLU SEQRES 4 A 84 GLU TYR ILE GLN ARG LEU LEU ALA GLU GLU GLU GLU GLU SEQRES 5 A 84 GLU LYS ARG GLN ALA GLU LYS ARG ARG ARG ALA MET GLU SEQRES 6 A 84 GLU GLN LEU LYS SER ASP GLU GLU LEU ALA ARG LYS LEU SEQRES 7 A 84 SER ILE ASP ILE ASN ASN SEQRES 1 B 77 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 77 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 77 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 77 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 77 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 77 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY ASP SEQRES 1 C 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN ARG GLU SER SEQRES 6 C 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 D 84 GLY PRO GLY HIS MET LEU SER LYS PRO GLY GLU LEU ARG SEQRES 2 D 84 ARG GLU TYR GLU GLU GLU ILE SER LYS VAL ALA ALA GLU SEQRES 3 D 84 ARG ARG ALA SER GLU GLU GLU GLU ASN LYS ALA SER GLU SEQRES 4 D 84 GLU TYR ILE GLN ARG LEU LEU ALA GLU GLU GLU GLU GLU SEQRES 5 D 84 GLU LYS ARG GLN ALA GLU LYS ARG ARG ARG ALA MET GLU SEQRES 6 D 84 GLU GLN LEU LYS SER ASP GLU GLU LEU ALA ARG LYS LEU SEQRES 7 D 84 SER ILE ASP ILE ASN ASN SEQRES 1 E 77 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 E 77 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 E 77 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 E 77 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 E 77 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 E 77 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY ASP SEQRES 1 F 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 F 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 F 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 F 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 F 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN ARG GLU SER SEQRES 6 F 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET XYZ A 201 10 HET MG B 101 1 HET MG C 101 1 HET XYZ D 201 10 HETNAM XYZ BETA-D-XYLOFURANOSE HETNAM MG MAGNESIUM ION HETSYN XYZ BETA-D-XYLOSE; D-XYLOSE; XYLOSE FORMUL 7 XYZ 2(C5 H10 O5) FORMUL 8 MG 2(MG 2+) FORMUL 11 HOH *312(H2 O) HELIX 1 AA1 GLY A 114 ASN A 188 1 75 HELIX 2 AA2 THR B 22 GLY B 35 1 14 HELIX 3 AA3 PRO B 37 ASP B 39 5 3 HELIX 4 AA4 LEU B 56 ASN B 60 5 5 HELIX 5 AA5 THR C 22 GLY C 35 1 14 HELIX 6 AA6 PRO C 37 ASP C 39 5 3 HELIX 7 AA7 LEU C 56 ASN C 60 5 5 HELIX 8 AA8 GLY D 114 ASN D 188 1 75 HELIX 9 AA9 THR E 22 GLY E 35 1 14 HELIX 10 AB1 PRO E 37 ASP E 39 5 3 HELIX 11 AB2 THR F 22 GLY F 35 1 14 HELIX 12 AB3 PRO F 37 ASP F 39 5 3 HELIX 13 AB4 LEU F 56 ASN F 60 5 5 SHEET 1 AA1 5 THR B 12 GLU B 16 0 SHEET 2 AA1 5 GLN B 2 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 AA1 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 AA1 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA1 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 AA2 5 THR C 12 GLU C 16 0 SHEET 2 AA2 5 GLN C 2 THR C 7 -1 N VAL C 5 O ILE C 13 SHEET 3 AA2 5 THR C 66 LEU C 71 1 O LEU C 69 N LYS C 6 SHEET 4 AA2 5 GLN C 41 PHE C 45 -1 N ARG C 42 O VAL C 70 SHEET 5 AA2 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 SHEET 1 AA3 5 THR E 12 GLU E 16 0 SHEET 2 AA3 5 GLN E 2 LYS E 6 -1 N VAL E 5 O ILE E 13 SHEET 3 AA3 5 THR E 66 LEU E 71 1 O LEU E 67 N LYS E 6 SHEET 4 AA3 5 GLN E 41 PHE E 45 -1 N ILE E 44 O HIS E 68 SHEET 5 AA3 5 LYS E 48 GLN E 49 -1 O LYS E 48 N PHE E 45 SHEET 1 AA4 5 THR F 12 GLU F 16 0 SHEET 2 AA4 5 GLN F 2 THR F 7 -1 N VAL F 5 O ILE F 13 SHEET 3 AA4 5 THR F 66 LEU F 71 1 O LEU F 67 N PHE F 4 SHEET 4 AA4 5 GLN F 41 PHE F 45 -1 N ARG F 42 O VAL F 70 SHEET 5 AA4 5 LYS F 48 GLN F 49 -1 O LYS F 48 N PHE F 45 LINK OD1 ASP B 32 MG MG B 101 1555 1555 2.09 LINK MG MG B 101 O HOH B 205 1555 1555 2.22 LINK MG MG B 101 O HOH B 208 1555 1555 2.08 LINK MG MG B 101 OD1 ASP F 32 1555 1555 1.97 LINK MG MG B 101 O HOH F 130 1555 1555 2.09 LINK MG MG B 101 O HOH F 134 1555 1555 2.13 LINK OD1 ASP C 32 MG MG C 101 1555 1555 2.13 LINK MG MG C 101 O HOH C 217 1555 1555 1.99 LINK MG MG C 101 O HOH C 221 1555 1555 2.37 LINK MG MG C 101 OD1 ASP E 32 1555 1555 1.88 LINK MG MG C 101 O HOH E 107 1555 1555 2.34 LINK MG MG C 101 O HOH E 112 1555 1555 1.92 CRYST1 35.273 66.291 74.173 76.47 79.29 80.49 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028350 -0.004751 -0.004465 0.00000 SCALE2 0.000000 0.015295 -0.003281 0.00000 SCALE3 0.000000 0.000000 0.014033 0.00000