HEADER TRANSFERASE/RIBOSOMAL PROTEIN 27-APR-17 5XIT TITLE CRYSTAL STRUCTURE OF RNF168 UDM1 IN COMPLEX WITH LYS63-LINKED TITLE 2 DIUBIQUITIN, FORM II COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-40S RIBOSOMAL PROTEIN S27A; COMPND 3 CHAIN: D, F; COMPND 4 SYNONYM: UBIQUITIN CARBOXYL EXTENSION PROTEIN 80; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF168; COMPND 9 CHAIN: E, A; COMPND 10 FRAGMENT: UNP RESIDUES 113-188; COMPND 11 SYNONYM: HRNF168,RING FINGER PROTEIN 168,RING-TYPE E3 UBIQUITIN COMPND 12 TRANSFERASE RNF168; COMPND 13 EC: 2.3.2.27; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: UBIQUITIN-40S RIBOSOMAL PROTEIN S27A; COMPND 17 CHAIN: H, B; COMPND 18 SYNONYM: UBIQUITIN CARBOXYL EXTENSION PROTEIN 80; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RPS27A, UBA80, UBCEP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: RNF168; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PCOLD-GST; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 23 ORGANISM_COMMON: MOUSE; SOURCE 24 ORGANISM_TAXID: 10090; SOURCE 25 GENE: RPS27A, UBA80, UBCEP1; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS PROTEIN COMPLEX, DNA REPAIR, TRANSFERASE-RIBOSOMAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.S.TAKAHASHI,Y.SATO,S.FUKAI REVDAT 4 22-NOV-23 5XIT 1 LINK REVDAT 3 28-MAR-18 5XIT 1 TITLE REVDAT 2 21-MAR-18 5XIT 1 TITLE REVDAT 1 07-MAR-18 5XIT 0 JRNL AUTH T.S.TAKAHASHI,Y.HIRADE,A.TOMA,Y.SATO,A.YAMAGATA,S.GOTO-ITO, JRNL AUTH 2 A.TOMITA,S.NAKADA,S.FUKAI JRNL TITL STRUCTURAL INSIGHTS INTO TWO DISTINCT BINDING MODULES FOR JRNL TITL 2 LYS63-LINKED POLYUBIQUITIN CHAINS IN RNF168. JRNL REF NAT COMMUN V. 9 170 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29330428 JRNL DOI 10.1038/S41467-017-02345-Y REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 21366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9959 - 4.4875 0.90 2559 140 0.1771 0.1830 REMARK 3 2 4.4875 - 3.5623 0.91 2556 148 0.1983 0.2171 REMARK 3 3 3.5623 - 3.1121 0.89 2522 141 0.2432 0.2854 REMARK 3 4 3.1121 - 2.8276 0.91 2588 134 0.2612 0.2520 REMARK 3 5 2.8276 - 2.6249 0.93 2634 141 0.2763 0.3401 REMARK 3 6 2.6249 - 2.4702 0.86 2444 131 0.2814 0.3026 REMARK 3 7 2.4702 - 2.3465 0.89 2546 143 0.2887 0.3418 REMARK 3 8 2.3465 - 2.2443 0.86 2418 121 0.3174 0.3396 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3704 REMARK 3 ANGLE : 0.615 4952 REMARK 3 CHIRALITY : 0.046 558 REMARK 3 PLANARITY : 0.003 652 REMARK 3 DIHEDRAL : 20.518 2365 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XIT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300003606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21397 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11200 REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.67000 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2FID REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG MME 2000, 0.1 M BIS-TRIS (PH REMARK 280 6.5), 10 MM PR ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, H, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY E 108 REMARK 465 PRO E 109 REMARK 465 GLY E 110 REMARK 465 HIS E 111 REMARK 465 MET E 112 REMARK 465 ASN E 188 REMARK 465 GLY H 75 REMARK 465 GLY H 76 REMARK 465 ASP H 77 REMARK 465 GLY A 108 REMARK 465 PRO A 109 REMARK 465 GLY A 110 REMARK 465 HIS A 111 REMARK 465 MET A 112 REMARK 465 ARG B 74 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 465 ASP B 77 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLY D 76 NZ LYS B 63 1.33 REMARK 500 NZ LYS H 63 C GLY F 76 1.33 REMARK 500 OE2 GLU A 119 O HOH A 301 1.91 REMARK 500 O THR B 7 O HOH B 101 1.96 REMARK 500 O LYS A 163 O HOH A 302 2.06 REMARK 500 OE2 GLU A 135 O HOH A 303 2.09 REMARK 500 O HOH A 305 O HOH B 107 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN H 60 49.83 39.04 REMARK 500 GLN F 62 -167.87 -101.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PR E 201 PR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH E 306 O REMARK 620 2 HOH E 308 O 82.6 REMARK 620 3 HOH H 104 O 50.7 89.2 REMARK 620 4 HOH A 314 O 112.8 135.2 73.1 REMARK 620 5 HOH A 318 O 128.8 46.6 112.2 102.3 REMARK 620 6 HOH A 319 O 84.7 167.3 81.6 49.9 145.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PR E 203 PR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 117 NH2 REMARK 620 2 ARG A 118 NE 102.8 REMARK 620 3 ARG A 118 NH2 99.9 40.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PR E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PR E 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XIS RELATED DB: PDB REMARK 900 RELATED ID: 5XIU RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 ADDITIONAL C-TERMINAL RESIDUE DBREF 5XIT D 1 76 UNP P62983 RS27A_MOUSE 1 76 DBREF 5XIT E 113 188 UNP Q8IYW5 RN168_HUMAN 113 188 DBREF 5XIT H 1 76 UNP P62983 RS27A_MOUSE 1 76 DBREF 5XIT A 113 188 UNP Q8IYW5 RN168_HUMAN 113 188 DBREF 5XIT B 1 76 UNP P62983 RS27A_MOUSE 1 76 DBREF 5XIT F 1 76 UNP P62983 RS27A_MOUSE 1 76 SEQADV 5XIT ARG D 63 UNP P62983 LYS 63 ENGINEERED MUTATION SEQADV 5XIT GLY E 108 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIT PRO E 109 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIT GLY E 110 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIT HIS E 111 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIT MET E 112 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIT ASP H 77 UNP P62983 SEE SEQUENCE DETAILS SEQADV 5XIT GLY A 108 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIT PRO A 109 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIT GLY A 110 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIT HIS A 111 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIT MET A 112 UNP Q8IYW5 EXPRESSION TAG SEQADV 5XIT ASP B 77 UNP P62983 SEE SEQUENCE DETAILS SEQADV 5XIT ARG F 63 UNP P62983 LYS 63 ENGINEERED MUTATION SEQRES 1 D 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 D 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 D 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 D 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 D 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN ARG GLU SER SEQRES 6 D 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 E 81 GLY PRO GLY HIS MET PRO GLY GLU LEU ARG ARG GLU TYR SEQRES 2 E 81 GLU GLU GLU ILE SER LYS VAL ALA ALA GLU ARG ARG ALA SEQRES 3 E 81 SER GLU GLU GLU GLU ASN LYS ALA SER GLU GLU TYR ILE SEQRES 4 E 81 GLN ARG LEU LEU ALA GLU GLU GLU GLU GLU GLU LYS ARG SEQRES 5 E 81 GLN ALA GLU LYS ARG ARG ARG ALA MET GLU GLU GLN LEU SEQRES 6 E 81 LYS SER ASP GLU GLU LEU ALA ARG LYS LEU SER ILE ASP SEQRES 7 E 81 ILE ASN ASN SEQRES 1 H 77 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 H 77 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 H 77 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 H 77 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 H 77 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 H 77 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY ASP SEQRES 1 A 81 GLY PRO GLY HIS MET PRO GLY GLU LEU ARG ARG GLU TYR SEQRES 2 A 81 GLU GLU GLU ILE SER LYS VAL ALA ALA GLU ARG ARG ALA SEQRES 3 A 81 SER GLU GLU GLU GLU ASN LYS ALA SER GLU GLU TYR ILE SEQRES 4 A 81 GLN ARG LEU LEU ALA GLU GLU GLU GLU GLU GLU LYS ARG SEQRES 5 A 81 GLN ALA GLU LYS ARG ARG ARG ALA MET GLU GLU GLN LEU SEQRES 6 A 81 LYS SER ASP GLU GLU LEU ALA ARG LYS LEU SER ILE ASP SEQRES 7 A 81 ILE ASN ASN SEQRES 1 B 77 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 77 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 77 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 77 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 77 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 77 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY ASP SEQRES 1 F 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 F 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 F 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 F 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 F 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN ARG GLU SER SEQRES 6 F 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET GOL D 101 6 HET PR E 201 1 HET PR E 202 1 HET PR E 203 1 HET GOL E 204 6 HET GOL A 201 6 HET GOL A 202 6 HET GOL A 203 6 HETNAM GOL GLYCEROL HETNAM PR PRASEODYMIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 GOL 5(C3 H8 O3) FORMUL 8 PR 3(PR 3+) FORMUL 15 HOH *58(H2 O) HELIX 1 AA1 THR D 22 GLY D 35 1 14 HELIX 2 AA2 PRO D 37 ASP D 39 5 3 HELIX 3 AA3 LEU E 116 ILE E 186 1 71 HELIX 4 AA4 THR H 22 GLY H 35 1 14 HELIX 5 AA5 PRO H 37 ASP H 39 5 3 HELIX 6 AA6 GLY A 114 ASN A 187 1 74 HELIX 7 AA7 THR B 22 GLY B 35 1 14 HELIX 8 AA8 PRO B 37 ASP B 39 5 3 HELIX 9 AA9 THR F 22 GLY F 35 1 14 HELIX 10 AB1 PRO F 37 ASP F 39 5 3 SHEET 1 AA1 5 THR D 12 GLU D 16 0 SHEET 2 AA1 5 GLN D 2 THR D 7 -1 N VAL D 5 O ILE D 13 SHEET 3 AA1 5 THR D 66 LEU D 71 1 O LEU D 67 N PHE D 4 SHEET 4 AA1 5 GLN D 41 PHE D 45 -1 N ARG D 42 O VAL D 70 SHEET 5 AA1 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 SHEET 1 AA2 5 THR H 12 GLU H 16 0 SHEET 2 AA2 5 GLN H 2 THR H 7 -1 N VAL H 5 O ILE H 13 SHEET 3 AA2 5 THR H 66 LEU H 71 1 O LEU H 67 N LYS H 6 SHEET 4 AA2 5 GLN H 41 PHE H 45 -1 N ILE H 44 O HIS H 68 SHEET 5 AA2 5 LYS H 48 GLN H 49 -1 O LYS H 48 N PHE H 45 SHEET 1 AA3 5 THR B 12 GLU B 16 0 SHEET 2 AA3 5 GLN B 2 THR B 7 -1 N VAL B 5 O ILE B 13 SHEET 3 AA3 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 AA3 5 GLN B 41 PHE B 45 -1 N ARG B 42 O VAL B 70 SHEET 5 AA3 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 AA4 5 THR F 12 GLU F 16 0 SHEET 2 AA4 5 GLN F 2 LYS F 6 -1 N VAL F 5 O ILE F 13 SHEET 3 AA4 5 THR F 66 LEU F 71 1 O LEU F 67 N LYS F 6 SHEET 4 AA4 5 GLN F 41 PHE F 45 -1 N ARG F 42 O VAL F 70 SHEET 5 AA4 5 LYS F 48 GLN F 49 -1 O LYS F 48 N PHE F 45 LINK PR PR E 201 O HOH E 306 1555 1555 2.70 LINK PR PR E 201 O HOH E 308 1555 1555 3.10 LINK PR PR E 201 O HOH H 104 1555 1555 2.90 LINK PR PR E 201 O HOH A 314 1555 1455 3.00 LINK PR PR E 201 O HOH A 318 1555 1455 3.26 LINK PR PR E 201 O HOH A 319 1555 1455 2.65 LINK PR PR E 203 NH2 ARG A 117 1655 1555 3.15 LINK PR PR E 203 NE ARG A 118 1655 1555 3.50 LINK PR PR E 203 NH2 ARG A 118 1655 1555 3.08 SITE 1 AC1 1 LYS D 33 SITE 1 AC2 5 HOH A 314 HOH A 319 HOH E 306 HOH E 308 SITE 2 AC2 5 HOH H 104 SITE 1 AC3 2 ARG A 117 ARG A 118 SITE 1 AC4 1 ARG E 118 SITE 1 AC5 2 PRO A 113 THR D 14 SITE 1 AC6 5 GLU A 119 GLU A 123 ASP B 32 LYS B 33 SITE 2 AC6 5 THR D 9 SITE 1 AC7 1 GLU A 137 CRYST1 45.372 50.019 64.407 73.49 69.69 73.82 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022040 -0.006396 -0.006979 0.00000 SCALE2 0.000000 0.020817 -0.004429 0.00000 SCALE3 0.000000 0.000000 0.016926 0.00000