data_5XJW # _entry.id 5XJW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5XJW pdb_00005xjw 10.2210/pdb5xjw/pdb WWPDB D_1300003664 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2018-05-16 _pdbx_database_PDB_obs_spr.pdb_id 5XJW _pdbx_database_PDB_obs_spr.replace_pdb_id 5ES0 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 5XEW _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5XJW _pdbx_database_status.recvd_initial_deposition_date 2017-05-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tseng, W.H.' 1 ? 'Wu, P.C.' 2 ? 'Satange, R.B.' 3 ? 'Hou, M.H.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To be published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal Structure of the [Co2+-(Chromomycin A3)2]-CCG repeats Complex' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tseng, W.H.' 1 ? primary 'Wu, P.C.' 2 ? primary 'Satange, R.B.' 3 ? primary 'Hou, M.H.' 4 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 5XJW _cell.details ? _cell.formula_units_Z ? _cell.length_a 48.309 _cell.length_a_esd ? _cell.length_b 48.309 _cell.length_b_esd ? _cell.length_c 83.636 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XJW _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*TP*CP*GP*CP*CP*GP*CP*CP*GP*AP*A)-3') ; 3912.550 2 ? ? ? ? 2 branched man '3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose-(1-3)-beta-D-Olivopyranose-(1-3)-beta-D-Olivopyranose' 464.504 2 ? ? ? ? 3 branched man '2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose-(1-3)-4-O-acetyl-2,6-dideoxy-beta-D-galactopyranose' 334.363 2 ? ? ? ? 4 non-polymer syn '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' 420.410 2 ? ? ? ? 5 non-polymer syn 'COBALT (II) ION' 58.933 3 ? ? ? ? 6 water nat water 18.015 50 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DT)(DC)(DC)(DG)(DC)(DC)(DG)(DC)(DC)(DG)(DA)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TTCCGCCGCCGAA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DC n 1 4 DC n 1 5 DG n 1 6 DC n 1 7 DC n 1 8 DG n 1 9 DC n 1 10 DC n 1 11 DG n 1 12 DA n 1 13 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 13 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5XJW _struct_ref.pdbx_db_accession 5XJW _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5XJW A 1 ? 13 ? 5XJW 1 ? 13 ? 1 13 2 1 5XJW B 1 ? 13 ? 5XJW 14 ? 26 ? 14 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1GL 'D-saccharide, alpha linking' . 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose ;4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 2-deoxy-4-O-methyl-alpha-D-fucopyranose; 2,6-dideoxy-4-O-methyl-alpha-D-galactose; 2,6-dideoxy-4-O-methyl-D-galactose; 2,6-dideoxy-4-O-methyl-galactose ; 'C7 H14 O4' 162.184 2GL 'D-saccharide, beta linking' . 4-O-acetyl-2,6-dideoxy-beta-D-galactopyranose ;4-O-ACETYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 4-O-acetyl-2,6-dideoxy-beta-D-galactose; 4-O-acetyl-2,6-dideoxy-D-galactose; 4-O-acetyl-2,6-dideoxy-galactose ; 'C8 H14 O5' 190.194 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 CPH non-polymer . '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' None 'C21 H24 O9' 420.410 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DDA 'D-saccharide, beta linking' . beta-D-Olivopyranose ;beta-D-Olivose; 2,6-dideoxy-beta-D-arabino-hexopyranose; 2,6-dideoxy-beta-D-glucopyranose; 2,6-dideoxy-beta-D-mannopyranose; 2-deoxy-beta-D-quinovopyranose; 2-deoxy-beta-D-rhamnoopyranose; D-Olivose; Olivose; 2,6-DIDEOXY-BETA-D-GLUCOSE; 2,6-DIDEOXY-BETA-D-MANNOSE ; 'C6 H12 O4' 148.157 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 ERI 'L-saccharide, alpha linking' n 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose ;4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE; 3-C-methyl-4-O-acetyl-alpha-L-Olivose; 3-C-methyl-4-O-acetyl-L-Olivose; 3-C-methyl-4-O-acetyl-Olivose ; 'C9 H16 O5' 204.220 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5XJW _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.89 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 68.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.0 mM ssDNA, 2.0 mM Chromomycin A3, 4mM CoCl2.6H2O, 50 mM Sodium Cacodylate, 5 mM Spermine, 3% MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2012-09-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.56418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE BL13B1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.56418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL13B1 _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.B_iso_Wilson_estimate 47.680 _reflns.entry_id 5XJW _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.0970 _reflns.d_resolution_low 30.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12596 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.100 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 24.800 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.887 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 2.100 2.180 ? ? ? ? ? ? ? 97.800 ? ? ? ? 0.267 ? ? ? ? ? ? ? ? 4.200 ? 0.961 ? ? ? ? ? 1 1 ? ? 2.180 2.260 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.249 ? ? ? ? ? ? ? ? 5.800 ? 1.063 ? ? ? ? ? 2 1 ? ? 2.260 2.370 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.185 ? ? ? ? ? ? ? ? 6.400 ? 1.234 ? ? ? ? ? 3 1 ? ? 2.370 2.490 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.137 ? ? ? ? ? ? ? ? 6.400 ? 1.217 ? ? ? ? ? 4 1 ? ? 2.490 2.650 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.121 ? ? ? ? ? ? ? ? 6.500 ? 1.289 ? ? ? ? ? 5 1 ? ? 2.650 2.850 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.101 ? ? ? ? ? ? ? ? 6.500 ? 1.792 ? ? ? ? ? 6 1 ? ? 2.850 3.140 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.069 ? ? ? ? ? ? ? ? 6.400 ? 1.955 ? ? ? ? ? 7 1 ? ? 3.140 3.590 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.054 ? ? ? ? ? ? ? ? 6.100 ? 2.121 ? ? ? ? ? 8 1 ? ? 3.590 4.520 ? ? ? ? ? ? ? 99.700 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? 6.200 ? 2.346 ? ? ? ? ? 9 1 ? ? 4.520 30.000 ? ? ? ? ? ? ? 98.100 ? ? ? ? 0.048 ? ? ? ? ? ? ? ? 6.000 ? 4.416 ? ? ? ? ? 10 1 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 123.080 _refine.B_iso_mean 55.6101 _refine.B_iso_min 30.930 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ;The force field of Chro unit used in the refinement of CoII(Chro)2-DNA complex structure was generated using the atomic resolution crystal structure of NiII(Chro)2. ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5XJW _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.0970 _refine.ls_d_res_low 29.5760 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12596 _refine.ls_number_reflns_R_free 1230 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.4500 _refine.ls_percent_reflns_R_free 9.7700 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2275 _refine.ls_R_factor_R_free 0.2457 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2253 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5XEW _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.0700 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2500 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.0970 _refine_hist.d_res_low 29.5760 _refine_hist.pdbx_number_atoms_ligand 169 _refine_hist.number_atoms_solvent 50 _refine_hist.number_atoms_total 699 _refine_hist.pdbx_number_residues_total 24 _refine_hist.pdbx_B_iso_mean_ligand 43.95 _refine_hist.pdbx_B_iso_mean_solvent 57.27 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 480 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 ? 714 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.764 ? 1056 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.039 ? 136 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 30 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 28.767 ? 316 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.0967 2.1806 1278 . 123 1155 92.0000 . . . 0.3429 0.0000 0.2800 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.1806 2.2798 1457 . 145 1312 99.0000 . . . 0.3864 0.0000 0.2878 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.2798 2.4000 1386 . 140 1246 100.0000 . . . 0.3077 0.0000 0.3005 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.4000 2.5503 1403 . 132 1271 99.0000 . . . 0.2934 0.0000 0.2897 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.5503 2.7470 1426 . 140 1286 100.0000 . . . 0.3933 0.0000 0.2963 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 2.7470 3.0232 1429 . 132 1297 100.0000 . . . 0.2815 0.0000 0.3165 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 3.0232 3.4601 1415 . 140 1275 99.0000 . . . 0.2217 0.0000 0.2029 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 3.4601 4.3572 1394 . 134 1260 99.0000 . . . 0.2396 0.0000 0.2024 . . . . . . 9 . . . 'X-RAY DIFFRACTION' 4.3572 29.5794 1408 . 144 1264 98.0000 . . . 0.1946 0.0000 0.1866 . . . . . . 9 . . . # _struct.entry_id 5XJW _struct.title 'Crystal Structure of the [Co2+-(Chromomycin A3)2]-CCG repeats Complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5XJW _struct_keywords.text ;Nucleotide Flipping-out, CCG trinucleotide repeats, Chromomycin A3, Metalloantibiotics, Minor Groove Binding drug, DNA-ANTIBIOTIC complex ; _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 2 ? G N N 4 ? H N N 5 ? I N N 5 ? J N N 4 ? K N N 5 ? L N N 6 ? M N N 6 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? G CPH . C6 ? ? ? 1_555 D 2GL . O1 ? ? A CPH 106 D 2GL 1 1_555 ? ? ? ? ? ? ? 1.371 ? ? covale2 covale one ? G CPH . C2 ? ? ? 1_555 F DDA . O1 ? ? A CPH 106 F DDA 1 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale3 covale one ? J CPH . C2 ? ? ? 1_555 C DDA . O1 ? ? B CPH 103 C DDA 1 1_555 ? ? ? ? ? ? ? 1.373 ? ? covale4 covale one ? J CPH . C6 ? ? ? 1_555 E 2GL . O1 ? ? B CPH 103 E 2GL 1 1_555 ? ? ? ? ? ? ? 1.380 ? ? covale5 covale both ? C DDA . O3 ? ? ? 1_555 C DDA . C1 ? ? C DDA 1 C DDA 2 1_555 ? ? ? ? ? ? ? 1.431 sing ? covale6 covale both ? C DDA . O3 ? ? ? 1_555 C ERI . C1 ? ? C DDA 2 C ERI 3 1_555 ? ? ? ? ? ? ? 1.429 sing ? covale7 covale both ? D 2GL . O3 ? ? ? 1_555 D 1GL . C1 ? ? D 2GL 1 D 1GL 2 1_555 ? ? ? ? ? ? ? 1.434 sing ? covale8 covale both ? E 2GL . O3 ? ? ? 1_555 E 1GL . C1 ? ? E 2GL 1 E 1GL 2 1_555 ? ? ? ? ? ? ? 1.432 sing ? covale9 covale both ? F DDA . O3 ? ? ? 1_555 F DDA . C1 ? ? F DDA 1 F DDA 2 1_555 ? ? ? ? ? ? ? 1.432 sing ? covale10 covale both ? F DDA . O3 ? ? ? 1_555 F ERI . C1 ? ? F DDA 2 F ERI 3 1_555 ? ? ? ? ? ? ? 1.430 sing ? metalc1 metalc ? ? A DG 8 N7 ? ? ? 1_555 I CO . CO ? ? A DG 8 A CO 108 1_555 ? ? ? ? ? ? ? 2.224 ? ? metalc2 metalc ? ? G CPH . O1 ? ? ? 1_555 H CO . CO ? ? A CPH 106 A CO 107 1_555 ? ? ? ? ? ? ? 1.937 ? ? metalc3 metalc ? ? G CPH . O9 ? ? ? 1_555 H CO . CO ? ? A CPH 106 A CO 107 1_555 ? ? ? ? ? ? ? 1.907 ? ? metalc4 metalc ? ? H CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 107 A HOH 206 1_555 ? ? ? ? ? ? ? 2.164 ? ? metalc5 metalc ? ? H CO . CO ? ? ? 1_555 J CPH . O1 ? ? A CO 107 B CPH 103 1_555 ? ? ? ? ? ? ? 1.907 ? ? metalc6 metalc ? ? H CO . CO ? ? ? 1_555 J CPH . O9 ? ? A CO 107 B CPH 103 1_555 ? ? ? ? ? ? ? 1.945 ? ? metalc7 metalc ? ? H CO . CO ? ? ? 1_555 M HOH . O ? ? A CO 107 B HOH 203 1_555 ? ? ? ? ? ? ? 2.186 ? ? metalc8 metalc ? ? I CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 108 A HOH 202 1_555 ? ? ? ? ? ? ? 2.007 ? ? metalc9 metalc ? ? I CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 108 A HOH 204 1_555 ? ? ? ? ? ? ? 2.006 ? ? metalc10 metalc ? ? I CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 108 A HOH 207 1_555 ? ? ? ? ? ? ? 2.231 ? ? metalc11 metalc ? ? I CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 108 A HOH 213 1_555 ? ? ? ? ? ? ? 1.882 ? ? metalc12 metalc ? ? I CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 108 A HOH 218 1_555 ? ? ? ? ? ? ? 2.426 ? ? metalc13 metalc ? ? B DG 8 N7 ? ? ? 1_555 K CO . CO ? ? B DG 21 B CO 107 1_555 ? ? ? ? ? ? ? 2.272 ? ? metalc14 metalc ? ? K CO . CO ? ? ? 1_555 M HOH . O ? ? B CO 107 B HOH 202 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc15 metalc ? ? K CO . CO ? ? ? 1_555 M HOH . O ? ? B CO 107 B HOH 204 1_555 ? ? ? ? ? ? ? 2.003 ? ? metalc16 metalc ? ? K CO . CO ? ? ? 1_555 M HOH . O ? ? B CO 107 B HOH 208 1_555 ? ? ? ? ? ? ? 2.006 ? ? metalc17 metalc ? ? K CO . CO ? ? ? 1_555 M HOH . O ? ? B CO 107 B HOH 213 1_555 ? ? ? ? ? ? ? 1.891 ? ? metalc18 metalc ? ? K CO . CO ? ? ? 1_555 M HOH . O ? ? B CO 107 B HOH 222 1_555 ? ? ? ? ? ? ? 2.356 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 13 N7 ? ? A DT 1 B DA 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 13 N6 ? ? A DT 1 B DA 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 2 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 2 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 4 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 4 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 4 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 5 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 5 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 5 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 8 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 8 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 8 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 10 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 10 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 10 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 11 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 11 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 11 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 12 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 12 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 13 N7 ? ? ? 1_555 B DT 1 N3 ? ? A DA 13 B DT 14 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _atom_sites.entry_id 5XJW _atom_sites.fract_transf_matrix[1][1] 0.020700 _atom_sites.fract_transf_matrix[1][2] 0.011951 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023902 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011957 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CO N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DC 3 3 ? ? ? A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DC 10 10 10 DC C A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DA 12 12 12 DA A A . n A 1 13 DA 13 13 13 DA A A . n B 1 1 DT 1 14 14 DT T B . n B 1 2 DT 2 15 15 DT T B . n B 1 3 DC 3 16 ? ? ? B . n B 1 4 DC 4 17 17 DC C B . n B 1 5 DG 5 18 18 DG G B . n B 1 6 DC 6 19 19 DC C B . n B 1 7 DC 7 20 20 DC C B . n B 1 8 DG 8 21 21 DG G B . n B 1 9 DC 9 22 22 DC C B . n B 1 10 DC 10 23 23 DC C B . n B 1 11 DG 11 24 24 DG G B . n B 1 12 DA 12 25 25 DA A B . n B 1 13 DA 13 26 26 DA A B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CPH 1 106 62 CPH CPH A . H 5 CO 1 107 600 CO CO A . I 5 CO 1 108 601 CO CO A . J 4 CPH 1 103 56 CPH CPH B . K 5 CO 1 107 602 CO CO B . L 6 HOH 1 201 116 HOH HOH A . L 6 HOH 2 202 103 HOH HOH A . L 6 HOH 3 203 241 HOH HOH A . L 6 HOH 4 204 105 HOH HOH A . L 6 HOH 5 205 219 HOH HOH A . L 6 HOH 6 206 100 HOH HOH A . L 6 HOH 7 207 104 HOH HOH A . L 6 HOH 8 208 156 HOH HOH A . L 6 HOH 9 209 112 HOH HOH A . L 6 HOH 10 210 186 HOH HOH A . L 6 HOH 11 211 115 HOH HOH A . L 6 HOH 12 212 170 HOH HOH A . L 6 HOH 13 213 102 HOH HOH A . L 6 HOH 14 214 125 HOH HOH A . L 6 HOH 15 215 204 HOH HOH A . L 6 HOH 16 216 157 HOH HOH A . L 6 HOH 17 217 175 HOH HOH A . L 6 HOH 18 218 106 HOH HOH A . L 6 HOH 19 219 163 HOH HOH A . L 6 HOH 20 220 178 HOH HOH A . L 6 HOH 21 221 215 HOH HOH A . L 6 HOH 22 222 184 HOH HOH A . L 6 HOH 23 223 220 HOH HOH A . L 6 HOH 24 224 195 HOH HOH A . L 6 HOH 25 225 192 HOH HOH A . L 6 HOH 26 226 203 HOH HOH A . M 6 HOH 1 201 113 HOH HOH B . M 6 HOH 2 202 109 HOH HOH B . M 6 HOH 3 203 101 HOH HOH B . M 6 HOH 4 204 110 HOH HOH B . M 6 HOH 5 205 180 HOH HOH B . M 6 HOH 6 206 134 HOH HOH B . M 6 HOH 7 207 127 HOH HOH B . M 6 HOH 8 208 108 HOH HOH B . M 6 HOH 9 209 126 HOH HOH B . M 6 HOH 10 210 114 HOH HOH B . M 6 HOH 11 211 171 HOH HOH B . M 6 HOH 12 212 193 HOH HOH B . M 6 HOH 13 213 107 HOH HOH B . M 6 HOH 14 214 189 HOH HOH B . M 6 HOH 15 215 158 HOH HOH B . M 6 HOH 16 216 145 HOH HOH B . M 6 HOH 17 217 121 HOH HOH B . M 6 HOH 18 218 153 HOH HOH B . M 6 HOH 19 219 133 HOH HOH B . M 6 HOH 20 220 185 HOH HOH B . M 6 HOH 21 221 140 HOH HOH B . M 6 HOH 22 222 111 HOH HOH B . M 6 HOH 23 223 194 HOH HOH B . M 6 HOH 24 224 237 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_001136 _pdbx_molecule_features.name 'Chromomycin A3, Monomer' _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ? # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_001136 C 1 PRD_001136 D 1 PRD_001136 G 2 PRD_001136 E 2 PRD_001136 F 2 PRD_001136 J # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 221 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id M _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 8 ? A DG 8 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 202 ? 1_555 93.3 ? 2 N7 ? A DG 8 ? A DG 8 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 204 ? 1_555 90.4 ? 3 O ? L HOH . ? A HOH 202 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 204 ? 1_555 91.8 ? 4 N7 ? A DG 8 ? A DG 8 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 207 ? 1_555 90.7 ? 5 O ? L HOH . ? A HOH 202 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 207 ? 1_555 103.1 ? 6 O ? L HOH . ? A HOH 204 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 207 ? 1_555 164.9 ? 7 N7 ? A DG 8 ? A DG 8 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 213 ? 1_555 84.8 ? 8 O ? L HOH . ? A HOH 202 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 213 ? 1_555 178.1 ? 9 O ? L HOH . ? A HOH 204 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 213 ? 1_555 88.5 ? 10 O ? L HOH . ? A HOH 207 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 213 ? 1_555 76.6 ? 11 N7 ? A DG 8 ? A DG 8 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 218 ? 1_555 157.7 ? 12 O ? L HOH . ? A HOH 202 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 218 ? 1_555 106.7 ? 13 O ? L HOH . ? A HOH 204 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 218 ? 1_555 98.5 ? 14 O ? L HOH . ? A HOH 207 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 218 ? 1_555 75.5 ? 15 O ? L HOH . ? A HOH 213 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 218 ? 1_555 75.1 ? 16 O1 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O9 ? G CPH . ? A CPH 106 ? 1_555 83.6 ? 17 O1 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? L HOH . ? A HOH 206 ? 1_555 90.4 ? 18 O9 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? L HOH . ? A HOH 206 ? 1_555 100.9 ? 19 O1 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O1 ? J CPH . ? B CPH 103 ? 1_555 85.1 ? 20 O9 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O1 ? J CPH . ? B CPH 103 ? 1_555 98.7 ? 21 O ? L HOH . ? A HOH 206 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O1 ? J CPH . ? B CPH 103 ? 1_555 159.3 ? 22 O1 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 97.6 ? 23 O9 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 177.6 ? 24 O ? L HOH . ? A HOH 206 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 77.0 ? 25 O1 ? J CPH . ? B CPH 103 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 83.5 ? 26 O1 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? M HOH . ? B HOH 203 ? 1_555 161.1 ? 27 O9 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? M HOH . ? B HOH 203 ? 1_555 78.5 ? 28 O ? L HOH . ? A HOH 206 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? M HOH . ? B HOH 203 ? 1_555 98.9 ? 29 O1 ? J CPH . ? B CPH 103 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? M HOH . ? B HOH 203 ? 1_555 91.6 ? 30 O9 ? J CPH . ? B CPH 103 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? M HOH . ? B HOH 203 ? 1_555 100.5 ? 31 N7 ? B DG 8 ? B DG 21 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 202 ? 1_555 89.5 ? 32 N7 ? B DG 8 ? B DG 21 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 204 ? 1_555 91.7 ? 33 O ? M HOH . ? B HOH 202 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 204 ? 1_555 164.5 ? 34 N7 ? B DG 8 ? B DG 21 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 93.7 ? 35 O ? M HOH . ? B HOH 202 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 111.6 ? 36 O ? M HOH . ? B HOH 204 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 83.8 ? 37 N7 ? B DG 8 ? B DG 21 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 213 ? 1_555 86.8 ? 38 O ? M HOH . ? B HOH 202 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 213 ? 1_555 66.0 ? 39 O ? M HOH . ? B HOH 204 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 213 ? 1_555 98.6 ? 40 O ? M HOH . ? B HOH 208 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 213 ? 1_555 177.5 ? 41 N7 ? B DG 8 ? B DG 21 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 222 ? 1_555 166.2 ? 42 O ? M HOH . ? B HOH 202 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 222 ? 1_555 78.6 ? 43 O ? M HOH . ? B HOH 204 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 222 ? 1_555 98.0 ? 44 O ? M HOH . ? B HOH 208 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 222 ? 1_555 97.1 ? 45 O ? M HOH . ? B HOH 213 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 222 ? 1_555 82.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-05-16 2 'Structure model' 2 0 2018-06-06 3 'Structure model' 2 1 2018-09-12 4 'Structure model' 2 2 2018-10-03 5 'Structure model' 3 0 2020-07-29 6 'Structure model' 3 1 2023-11-22 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Data collection' 4 2 'Structure model' 'Derived calculations' 5 2 'Structure model' 'Non-polymer description' 6 2 'Structure model' 'Structure summary' 7 3 'Structure model' 'Data collection' 8 3 'Structure model' 'Structure summary' 9 4 'Structure model' 'Data collection' 10 4 'Structure model' 'Structure summary' 11 5 'Structure model' Advisory 12 5 'Structure model' 'Atomic model' 13 5 'Structure model' 'Data collection' 14 5 'Structure model' 'Derived calculations' 15 5 'Structure model' 'Structure summary' 16 6 'Structure model' 'Data collection' 17 6 'Structure model' 'Database references' 18 6 'Structure model' 'Derived calculations' 19 6 'Structure model' 'Refinement description' 20 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' chem_comp 3 2 'Structure model' entity 4 2 'Structure model' pdbx_entity_nonpoly 5 2 'Structure model' pdbx_molecule 6 2 'Structure model' pdbx_molecule_features 7 2 'Structure model' pdbx_nonpoly_scheme 8 2 'Structure model' pdbx_validate_close_contact 9 2 'Structure model' struct_conn 10 3 'Structure model' pdbx_molecule 11 4 'Structure model' pdbx_molecule 12 5 'Structure model' atom_site 13 5 'Structure model' chem_comp 14 5 'Structure model' entity 15 5 'Structure model' pdbx_branch_scheme 16 5 'Structure model' pdbx_chem_comp_identifier 17 5 'Structure model' pdbx_entity_branch 18 5 'Structure model' pdbx_entity_branch_descriptor 19 5 'Structure model' pdbx_entity_branch_link 20 5 'Structure model' pdbx_entity_branch_list 21 5 'Structure model' pdbx_entity_nonpoly 22 5 'Structure model' pdbx_molecule 23 5 'Structure model' pdbx_nonpoly_scheme 24 5 'Structure model' pdbx_struct_assembly_gen 25 5 'Structure model' pdbx_struct_conn_angle 26 5 'Structure model' pdbx_struct_special_symmetry 27 5 'Structure model' pdbx_validate_close_contact 28 5 'Structure model' struct_asym 29 5 'Structure model' struct_conn 30 5 'Structure model' struct_conn_type 31 6 'Structure model' chem_comp 32 6 'Structure model' chem_comp_atom 33 6 'Structure model' chem_comp_bond 34 6 'Structure model' database_2 35 6 'Structure model' pdbx_initial_refinement_model 36 6 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.B_iso_or_equiv' 2 2 'Structure model' '_atom_site.Cartn_x' 3 2 'Structure model' '_atom_site.Cartn_y' 4 2 'Structure model' '_atom_site.Cartn_z' 5 2 'Structure model' '_atom_site.auth_atom_id' 6 2 'Structure model' '_atom_site.auth_comp_id' 7 2 'Structure model' '_atom_site.label_atom_id' 8 2 'Structure model' '_atom_site.label_comp_id' 9 2 'Structure model' '_atom_site.type_symbol' 10 2 'Structure model' '_chem_comp.formula' 11 2 'Structure model' '_chem_comp.formula_weight' 12 2 'Structure model' '_chem_comp.id' 13 2 'Structure model' '_chem_comp.mon_nstd_flag' 14 2 'Structure model' '_chem_comp.name' 15 2 'Structure model' '_chem_comp.pdbx_synonyms' 16 2 'Structure model' '_chem_comp.type' 17 2 'Structure model' '_entity.formula_weight' 18 2 'Structure model' '_entity.pdbx_description' 19 2 'Structure model' '_pdbx_entity_nonpoly.comp_id' 20 2 'Structure model' '_pdbx_entity_nonpoly.name' 21 2 'Structure model' '_pdbx_molecule.prd_id' 22 2 'Structure model' '_pdbx_molecule_features.class' 23 2 'Structure model' '_pdbx_molecule_features.name' 24 2 'Structure model' '_pdbx_molecule_features.prd_id' 25 2 'Structure model' '_pdbx_molecule_features.type' 26 2 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 27 2 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 28 2 'Structure model' '_pdbx_validate_close_contact.auth_atom_id_1' 29 2 'Structure model' '_pdbx_validate_close_contact.auth_atom_id_2' 30 2 'Structure model' '_pdbx_validate_close_contact.auth_comp_id_1' 31 2 'Structure model' '_pdbx_validate_close_contact.auth_comp_id_2' 32 2 'Structure model' '_struct_conn.pdbx_dist_value' 33 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 34 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 35 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 36 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 37 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 38 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 39 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 40 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 41 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 42 5 'Structure model' '_atom_site.B_iso_or_equiv' 43 5 'Structure model' '_atom_site.Cartn_x' 44 5 'Structure model' '_atom_site.Cartn_y' 45 5 'Structure model' '_atom_site.Cartn_z' 46 5 'Structure model' '_atom_site.auth_asym_id' 47 5 'Structure model' '_atom_site.auth_atom_id' 48 5 'Structure model' '_atom_site.auth_comp_id' 49 5 'Structure model' '_atom_site.auth_seq_id' 50 5 'Structure model' '_atom_site.label_asym_id' 51 5 'Structure model' '_atom_site.label_atom_id' 52 5 'Structure model' '_atom_site.label_comp_id' 53 5 'Structure model' '_atom_site.label_entity_id' 54 5 'Structure model' '_atom_site.type_symbol' 55 5 'Structure model' '_chem_comp.mon_nstd_flag' 56 5 'Structure model' '_chem_comp.name' 57 5 'Structure model' '_chem_comp.type' 58 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 59 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 60 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 61 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 62 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 63 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 64 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 65 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 66 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 67 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 68 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 69 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 70 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 71 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 72 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 73 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 74 5 'Structure model' '_pdbx_struct_conn_angle.value' 75 5 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 76 5 'Structure model' '_struct_conn.conn_type_id' 77 5 'Structure model' '_struct_conn.id' 78 5 'Structure model' '_struct_conn.pdbx_dist_value' 79 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 80 5 'Structure model' '_struct_conn.pdbx_value_order' 81 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 82 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 83 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 84 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 85 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 86 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 87 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 88 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 89 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 90 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 91 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 92 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 93 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 94 5 'Structure model' '_struct_conn_type.id' 95 6 'Structure model' '_chem_comp.pdbx_synonyms' 96 6 'Structure model' '_database_2.pdbx_DOI' 97 6 'Structure model' '_database_2.pdbx_database_accession' 98 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? Blu-Ice ? ? ? . 1 ? 'data processing' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 3 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1-2155 4 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1-2155 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O1 C DDA 1 ? ? C3 B CPH 103 ? ? 2.10 2 1 O1 F DDA 1 ? ? C3 A CPH 106 ? ? 2.15 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 226 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.69 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A DC 3 ? A DC 3 2 1 Y 1 B DC 16 ? B DC 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1GL O1 O N N 1 1GL C1 C N S 2 1GL C2 C N N 3 1GL C3 C N R 4 1GL O3 O N N 5 1GL C4 C N R 6 1GL O4 O N N 7 1GL CME C N N 8 1GL C5 C N R 9 1GL O5 O N N 10 1GL C6 C N N 11 1GL HO1 H N N 12 1GL H1 H N N 13 1GL H2 H N N 14 1GL H22 H N N 15 1GL H3 H N N 16 1GL HO3 H N N 17 1GL H4 H N N 18 1GL HM41 H N N 19 1GL HM42 H N N 20 1GL HM43 H N N 21 1GL H5 H N N 22 1GL H61 H N N 23 1GL H62 H N N 24 1GL H63 H N N 25 2GL O5 O N N 26 2GL C1 C N R 27 2GL C2 C N N 28 2GL C3 C N R 29 2GL O3 O N N 30 2GL C4 C N R 31 2GL O4 O N N 32 2GL CME C N N 33 2GL CO4 C N N 34 2GL OC4 O N N 35 2GL C5 C N R 36 2GL O1 O N N 37 2GL C6 C N N 38 2GL HO1 H N N 39 2GL H1 H N N 40 2GL H2 H N N 41 2GL H22 H N N 42 2GL H3 H N N 43 2GL HO3 H N N 44 2GL H4 H N N 45 2GL HM41 H N N 46 2GL HM42 H N N 47 2GL HM43 H N N 48 2GL H5 H N N 49 2GL H61 H N N 50 2GL H62 H N N 51 2GL H63 H N N 52 CO CO CO N N 53 CPH C1 C N N 54 CPH O1 O N N 55 CPH C2 C N S 56 CPH C3 C N R 57 CPH C4 C N N 58 CPH C5 C Y N 59 CPH C6 C Y N 60 CPH C7 C Y N 61 CPH C8 C Y N 62 CPH O8 O N N 63 CPH C9 C Y N 64 CPH O9 O N N 65 CPH "C1'" C N S 66 CPH "O1'" O N N 67 CPH C10 C Y N 68 CPH "C2'" C N N 69 CPH "O2'" O N N 70 CPH "C3'" C N S 71 CPH "O3'" O N N 72 CPH "C4'" C N R 73 CPH "O4'" O N N 74 CPH C4A C Y N 75 CPH "C5'" C N N 76 CPH C5A C Y N 77 CPH C8A C Y N 78 CPH C9A C Y N 79 CPH CC7 C N N 80 CPH O6 O N N 81 CPH O2 O N N 82 CPH CME C N N 83 CPH H2 H N N 84 CPH H3 H N N 85 CPH H4 H N N 86 CPH H4A H N N 87 CPH H5 H N N 88 CPH HO8 H N N 89 CPH HO9 H N N 90 CPH "H1'" H N N 91 CPH H10 H N N 92 CPH "H3'" H N N 93 CPH "HO3'" H N N 94 CPH "H4'" H N N 95 CPH "HO4'" H N N 96 CPH "H5'" H N N 97 CPH "H5'A" H N N 98 CPH "H5'B" H N N 99 CPH HC7 H N N 100 CPH HC7A H N N 101 CPH HC7B H N N 102 CPH HO6 H N N 103 CPH HO2 H N N 104 CPH HME H N N 105 CPH HMEA H N N 106 CPH HMEB H N N 107 DA OP3 O N N 108 DA P P N N 109 DA OP1 O N N 110 DA OP2 O N N 111 DA "O5'" O N N 112 DA "C5'" C N N 113 DA "C4'" C N R 114 DA "O4'" O N N 115 DA "C3'" C N S 116 DA "O3'" O N N 117 DA "C2'" C N N 118 DA "C1'" C N R 119 DA N9 N Y N 120 DA C8 C Y N 121 DA N7 N Y N 122 DA C5 C Y N 123 DA C6 C Y N 124 DA N6 N N N 125 DA N1 N Y N 126 DA C2 C Y N 127 DA N3 N Y N 128 DA C4 C Y N 129 DA HOP3 H N N 130 DA HOP2 H N N 131 DA "H5'" H N N 132 DA "H5''" H N N 133 DA "H4'" H N N 134 DA "H3'" H N N 135 DA "HO3'" H N N 136 DA "H2'" H N N 137 DA "H2''" H N N 138 DA "H1'" H N N 139 DA H8 H N N 140 DA H61 H N N 141 DA H62 H N N 142 DA H2 H N N 143 DC OP3 O N N 144 DC P P N N 145 DC OP1 O N N 146 DC OP2 O N N 147 DC "O5'" O N N 148 DC "C5'" C N N 149 DC "C4'" C N R 150 DC "O4'" O N N 151 DC "C3'" C N S 152 DC "O3'" O N N 153 DC "C2'" C N N 154 DC "C1'" C N R 155 DC N1 N N N 156 DC C2 C N N 157 DC O2 O N N 158 DC N3 N N N 159 DC C4 C N N 160 DC N4 N N N 161 DC C5 C N N 162 DC C6 C N N 163 DC HOP3 H N N 164 DC HOP2 H N N 165 DC "H5'" H N N 166 DC "H5''" H N N 167 DC "H4'" H N N 168 DC "H3'" H N N 169 DC "HO3'" H N N 170 DC "H2'" H N N 171 DC "H2''" H N N 172 DC "H1'" H N N 173 DC H41 H N N 174 DC H42 H N N 175 DC H5 H N N 176 DC H6 H N N 177 DDA C1 C N R 178 DDA C2 C N N 179 DDA C3 C N R 180 DDA C4 C N S 181 DDA C5 C N R 182 DDA C6 C N N 183 DDA O5 O N N 184 DDA O1 O N N 185 DDA O3 O N N 186 DDA O4 O N N 187 DDA H1 H N N 188 DDA H21 H N N 189 DDA H22 H N N 190 DDA H3 H N N 191 DDA H4 H N N 192 DDA H5 H N N 193 DDA H61 H N N 194 DDA H62 H N N 195 DDA H63 H N N 196 DDA HO1 H N N 197 DDA HO3 H N N 198 DDA HO4 H N N 199 DG OP3 O N N 200 DG P P N N 201 DG OP1 O N N 202 DG OP2 O N N 203 DG "O5'" O N N 204 DG "C5'" C N N 205 DG "C4'" C N R 206 DG "O4'" O N N 207 DG "C3'" C N S 208 DG "O3'" O N N 209 DG "C2'" C N N 210 DG "C1'" C N R 211 DG N9 N Y N 212 DG C8 C Y N 213 DG N7 N Y N 214 DG C5 C Y N 215 DG C6 C N N 216 DG O6 O N N 217 DG N1 N N N 218 DG C2 C N N 219 DG N2 N N N 220 DG N3 N N N 221 DG C4 C Y N 222 DG HOP3 H N N 223 DG HOP2 H N N 224 DG "H5'" H N N 225 DG "H5''" H N N 226 DG "H4'" H N N 227 DG "H3'" H N N 228 DG "HO3'" H N N 229 DG "H2'" H N N 230 DG "H2''" H N N 231 DG "H1'" H N N 232 DG H8 H N N 233 DG H1 H N N 234 DG H21 H N N 235 DG H22 H N N 236 DT OP3 O N N 237 DT P P N N 238 DT OP1 O N N 239 DT OP2 O N N 240 DT "O5'" O N N 241 DT "C5'" C N N 242 DT "C4'" C N R 243 DT "O4'" O N N 244 DT "C3'" C N S 245 DT "O3'" O N N 246 DT "C2'" C N N 247 DT "C1'" C N R 248 DT N1 N N N 249 DT C2 C N N 250 DT O2 O N N 251 DT N3 N N N 252 DT C4 C N N 253 DT O4 O N N 254 DT C5 C N N 255 DT C7 C N N 256 DT C6 C N N 257 DT HOP3 H N N 258 DT HOP2 H N N 259 DT "H5'" H N N 260 DT "H5''" H N N 261 DT "H4'" H N N 262 DT "H3'" H N N 263 DT "HO3'" H N N 264 DT "H2'" H N N 265 DT "H2''" H N N 266 DT "H1'" H N N 267 DT H3 H N N 268 DT H71 H N N 269 DT H72 H N N 270 DT H73 H N N 271 DT H6 H N N 272 ERI O1 O N N 273 ERI C1 C N R 274 ERI C2 C N N 275 ERI C3 C N S 276 ERI O3 O N N 277 ERI CC3 C N N 278 ERI C4 C N S 279 ERI O4 O N N 280 ERI CME C N N 281 ERI CO4 C N N 282 ERI OC4 O N N 283 ERI C5 C N S 284 ERI O5 O N N 285 ERI C6 C N N 286 ERI HO1 H N N 287 ERI H1 H N N 288 ERI H21 H N N 289 ERI H22 H N N 290 ERI HO3 H N N 291 ERI H31 H N N 292 ERI H32 H N N 293 ERI H33 H N N 294 ERI H4 H N N 295 ERI H41 H N N 296 ERI H42 H N N 297 ERI H43 H N N 298 ERI H5 H N N 299 ERI H61 H N N 300 ERI H62 H N N 301 ERI H63 H N N 302 HOH O O N N 303 HOH H1 H N N 304 HOH H2 H N N 305 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1GL O1 C1 sing N N 1 1GL O1 HO1 sing N N 2 1GL C1 C2 sing N N 3 1GL C1 O5 sing N N 4 1GL C1 H1 sing N N 5 1GL C2 C3 sing N N 6 1GL C2 H2 sing N N 7 1GL C2 H22 sing N N 8 1GL C3 O3 sing N N 9 1GL C3 C4 sing N N 10 1GL C3 H3 sing N N 11 1GL O3 HO3 sing N N 12 1GL C4 O4 sing N N 13 1GL C4 C5 sing N N 14 1GL C4 H4 sing N N 15 1GL O4 CME sing N N 16 1GL CME HM41 sing N N 17 1GL CME HM42 sing N N 18 1GL CME HM43 sing N N 19 1GL C5 O5 sing N N 20 1GL C5 C6 sing N N 21 1GL C5 H5 sing N N 22 1GL C6 H61 sing N N 23 1GL C6 H62 sing N N 24 1GL C6 H63 sing N N 25 2GL O5 C1 sing N N 26 2GL O1 HO1 sing N N 27 2GL C1 C2 sing N N 28 2GL C1 O1 sing N N 29 2GL C1 H1 sing N N 30 2GL C2 C3 sing N N 31 2GL C2 H2 sing N N 32 2GL C2 H22 sing N N 33 2GL C3 O3 sing N N 34 2GL C3 C4 sing N N 35 2GL C3 H3 sing N N 36 2GL O3 HO3 sing N N 37 2GL C4 O4 sing N N 38 2GL C4 C5 sing N N 39 2GL C4 H4 sing N N 40 2GL O4 CO4 sing N N 41 2GL CME CO4 sing N N 42 2GL CME HM41 sing N N 43 2GL CME HM42 sing N N 44 2GL CME HM43 sing N N 45 2GL CO4 OC4 doub N N 46 2GL C5 O5 sing N N 47 2GL C5 C6 sing N N 48 2GL C5 H5 sing N N 49 2GL C6 H61 sing N N 50 2GL C6 H62 sing N N 51 2GL C6 H63 sing N N 52 CPH O1 C1 doub N N 53 CPH C9A C1 sing N N 54 CPH C1 C2 sing N N 55 CPH C2 O2 sing N N 56 CPH C2 C3 sing N N 57 CPH C2 H2 sing N N 58 CPH C3 C4 sing N N 59 CPH C3 "C1'" sing N N 60 CPH C3 H3 sing N N 61 CPH C4A C4 sing N N 62 CPH C4 H4 sing N N 63 CPH C4 H4A sing N N 64 CPH C6 C5 doub Y N 65 CPH C5 C5A sing Y N 66 CPH C5 H5 sing N N 67 CPH C7 C6 sing Y N 68 CPH O6 C6 sing N N 69 CPH CC7 C7 sing N N 70 CPH C7 C8 doub Y N 71 CPH O8 C8 sing N N 72 CPH C8 C8A sing Y N 73 CPH O8 HO8 sing N N 74 CPH O9 C9 sing N N 75 CPH C8A C9 doub Y N 76 CPH C9 C9A sing Y N 77 CPH O9 HO9 sing N N 78 CPH "C2'" "C1'" sing N N 79 CPH "C1'" "O1'" sing N N 80 CPH "C1'" "H1'" sing N N 81 CPH "O1'" CME sing N N 82 CPH C5A C10 doub Y N 83 CPH C10 C4A sing Y N 84 CPH C10 H10 sing N N 85 CPH "O2'" "C2'" doub N N 86 CPH "C2'" "C3'" sing N N 87 CPH "O3'" "C3'" sing N N 88 CPH "C3'" "C4'" sing N N 89 CPH "C3'" "H3'" sing N N 90 CPH "O3'" "HO3'" sing N N 91 CPH "O4'" "C4'" sing N N 92 CPH "C4'" "C5'" sing N N 93 CPH "C4'" "H4'" sing N N 94 CPH "O4'" "HO4'" sing N N 95 CPH C9A C4A doub Y N 96 CPH "C5'" "H5'" sing N N 97 CPH "C5'" "H5'A" sing N N 98 CPH "C5'" "H5'B" sing N N 99 CPH C8A C5A sing Y N 100 CPH CC7 HC7 sing N N 101 CPH CC7 HC7A sing N N 102 CPH CC7 HC7B sing N N 103 CPH O6 HO6 sing N N 104 CPH O2 HO2 sing N N 105 CPH CME HME sing N N 106 CPH CME HMEA sing N N 107 CPH CME HMEB sing N N 108 DA OP3 P sing N N 109 DA OP3 HOP3 sing N N 110 DA P OP1 doub N N 111 DA P OP2 sing N N 112 DA P "O5'" sing N N 113 DA OP2 HOP2 sing N N 114 DA "O5'" "C5'" sing N N 115 DA "C5'" "C4'" sing N N 116 DA "C5'" "H5'" sing N N 117 DA "C5'" "H5''" sing N N 118 DA "C4'" "O4'" sing N N 119 DA "C4'" "C3'" sing N N 120 DA "C4'" "H4'" sing N N 121 DA "O4'" "C1'" sing N N 122 DA "C3'" "O3'" sing N N 123 DA "C3'" "C2'" sing N N 124 DA "C3'" "H3'" sing N N 125 DA "O3'" "HO3'" sing N N 126 DA "C2'" "C1'" sing N N 127 DA "C2'" "H2'" sing N N 128 DA "C2'" "H2''" sing N N 129 DA "C1'" N9 sing N N 130 DA "C1'" "H1'" sing N N 131 DA N9 C8 sing Y N 132 DA N9 C4 sing Y N 133 DA C8 N7 doub Y N 134 DA C8 H8 sing N N 135 DA N7 C5 sing Y N 136 DA C5 C6 sing Y N 137 DA C5 C4 doub Y N 138 DA C6 N6 sing N N 139 DA C6 N1 doub Y N 140 DA N6 H61 sing N N 141 DA N6 H62 sing N N 142 DA N1 C2 sing Y N 143 DA C2 N3 doub Y N 144 DA C2 H2 sing N N 145 DA N3 C4 sing Y N 146 DC OP3 P sing N N 147 DC OP3 HOP3 sing N N 148 DC P OP1 doub N N 149 DC P OP2 sing N N 150 DC P "O5'" sing N N 151 DC OP2 HOP2 sing N N 152 DC "O5'" "C5'" sing N N 153 DC "C5'" "C4'" sing N N 154 DC "C5'" "H5'" sing N N 155 DC "C5'" "H5''" sing N N 156 DC "C4'" "O4'" sing N N 157 DC "C4'" "C3'" sing N N 158 DC "C4'" "H4'" sing N N 159 DC "O4'" "C1'" sing N N 160 DC "C3'" "O3'" sing N N 161 DC "C3'" "C2'" sing N N 162 DC "C3'" "H3'" sing N N 163 DC "O3'" "HO3'" sing N N 164 DC "C2'" "C1'" sing N N 165 DC "C2'" "H2'" sing N N 166 DC "C2'" "H2''" sing N N 167 DC "C1'" N1 sing N N 168 DC "C1'" "H1'" sing N N 169 DC N1 C2 sing N N 170 DC N1 C6 sing N N 171 DC C2 O2 doub N N 172 DC C2 N3 sing N N 173 DC N3 C4 doub N N 174 DC C4 N4 sing N N 175 DC C4 C5 sing N N 176 DC N4 H41 sing N N 177 DC N4 H42 sing N N 178 DC C5 C6 doub N N 179 DC C5 H5 sing N N 180 DC C6 H6 sing N N 181 DDA C1 C2 sing N N 182 DDA C1 O5 sing N N 183 DDA C1 O1 sing N N 184 DDA C1 H1 sing N N 185 DDA C2 C3 sing N N 186 DDA C2 H21 sing N N 187 DDA C2 H22 sing N N 188 DDA C3 C4 sing N N 189 DDA C3 O3 sing N N 190 DDA C3 H3 sing N N 191 DDA C4 C5 sing N N 192 DDA C4 O4 sing N N 193 DDA C4 H4 sing N N 194 DDA C5 C6 sing N N 195 DDA C5 O5 sing N N 196 DDA C5 H5 sing N N 197 DDA C6 H61 sing N N 198 DDA C6 H62 sing N N 199 DDA C6 H63 sing N N 200 DDA O1 HO1 sing N N 201 DDA O3 HO3 sing N N 202 DDA O4 HO4 sing N N 203 DG OP3 P sing N N 204 DG OP3 HOP3 sing N N 205 DG P OP1 doub N N 206 DG P OP2 sing N N 207 DG P "O5'" sing N N 208 DG OP2 HOP2 sing N N 209 DG "O5'" "C5'" sing N N 210 DG "C5'" "C4'" sing N N 211 DG "C5'" "H5'" sing N N 212 DG "C5'" "H5''" sing N N 213 DG "C4'" "O4'" sing N N 214 DG "C4'" "C3'" sing N N 215 DG "C4'" "H4'" sing N N 216 DG "O4'" "C1'" sing N N 217 DG "C3'" "O3'" sing N N 218 DG "C3'" "C2'" sing N N 219 DG "C3'" "H3'" sing N N 220 DG "O3'" "HO3'" sing N N 221 DG "C2'" "C1'" sing N N 222 DG "C2'" "H2'" sing N N 223 DG "C2'" "H2''" sing N N 224 DG "C1'" N9 sing N N 225 DG "C1'" "H1'" sing N N 226 DG N9 C8 sing Y N 227 DG N9 C4 sing Y N 228 DG C8 N7 doub Y N 229 DG C8 H8 sing N N 230 DG N7 C5 sing Y N 231 DG C5 C6 sing N N 232 DG C5 C4 doub Y N 233 DG C6 O6 doub N N 234 DG C6 N1 sing N N 235 DG N1 C2 sing N N 236 DG N1 H1 sing N N 237 DG C2 N2 sing N N 238 DG C2 N3 doub N N 239 DG N2 H21 sing N N 240 DG N2 H22 sing N N 241 DG N3 C4 sing N N 242 DT OP3 P sing N N 243 DT OP3 HOP3 sing N N 244 DT P OP1 doub N N 245 DT P OP2 sing N N 246 DT P "O5'" sing N N 247 DT OP2 HOP2 sing N N 248 DT "O5'" "C5'" sing N N 249 DT "C5'" "C4'" sing N N 250 DT "C5'" "H5'" sing N N 251 DT "C5'" "H5''" sing N N 252 DT "C4'" "O4'" sing N N 253 DT "C4'" "C3'" sing N N 254 DT "C4'" "H4'" sing N N 255 DT "O4'" "C1'" sing N N 256 DT "C3'" "O3'" sing N N 257 DT "C3'" "C2'" sing N N 258 DT "C3'" "H3'" sing N N 259 DT "O3'" "HO3'" sing N N 260 DT "C2'" "C1'" sing N N 261 DT "C2'" "H2'" sing N N 262 DT "C2'" "H2''" sing N N 263 DT "C1'" N1 sing N N 264 DT "C1'" "H1'" sing N N 265 DT N1 C2 sing N N 266 DT N1 C6 sing N N 267 DT C2 O2 doub N N 268 DT C2 N3 sing N N 269 DT N3 C4 sing N N 270 DT N3 H3 sing N N 271 DT C4 O4 doub N N 272 DT C4 C5 sing N N 273 DT C5 C7 sing N N 274 DT C5 C6 doub N N 275 DT C7 H71 sing N N 276 DT C7 H72 sing N N 277 DT C7 H73 sing N N 278 DT C6 H6 sing N N 279 ERI O1 C1 sing N N 280 ERI O1 HO1 sing N N 281 ERI C1 C2 sing N N 282 ERI C1 O5 sing N N 283 ERI C1 H1 sing N N 284 ERI C2 C3 sing N N 285 ERI C2 H21 sing N N 286 ERI C2 H22 sing N N 287 ERI C3 O3 sing N N 288 ERI C3 CC3 sing N N 289 ERI C3 C4 sing N N 290 ERI O3 HO3 sing N N 291 ERI CC3 H31 sing N N 292 ERI CC3 H32 sing N N 293 ERI CC3 H33 sing N N 294 ERI C4 O4 sing N N 295 ERI C4 C5 sing N N 296 ERI C4 H4 sing N N 297 ERI O4 CO4 sing N N 298 ERI CME CO4 sing N N 299 ERI CME H41 sing N N 300 ERI CME H42 sing N N 301 ERI CME H43 sing N N 302 ERI CO4 OC4 doub N N 303 ERI C5 O5 sing N N 304 ERI C5 C6 sing N N 305 ERI C5 H5 sing N N 306 ERI C6 H61 sing N N 307 ERI C6 H62 sing N N 308 ERI C6 H63 sing N N 309 HOH O H1 sing N N 310 HOH O H2 sing N N 311 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5XJW 'double helix' 5XJW 'a-form double helix' 5XJW 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 13 1_555 -1.770 3.538 0.595 -17.742 13.694 -79.982 1 A_DT1:DA26_B A 1 ? B 26 ? 23 3 1 A DT 2 1_555 B DA 12 1_555 -0.983 0.107 -0.063 0.832 -6.029 -6.684 2 A_DT2:DA25_B A 2 ? B 25 ? 20 1 1 A DC 4 1_555 B DG 11 1_555 -0.077 -0.179 -0.049 9.232 -18.757 -1.315 3 A_DC4:DG24_B A 4 ? B 24 ? 19 1 1 A DG 5 1_555 B DC 10 1_555 0.084 -0.178 -0.171 2.144 -11.589 -1.548 4 A_DG5:DC23_B A 5 ? B 23 ? 19 1 1 A DG 8 1_555 B DC 9 1_555 -0.255 -0.146 0.188 1.030 -10.026 0.572 5 A_DG8:DC22_B A 8 ? B 22 ? 19 1 1 A DC 9 1_555 B DG 8 1_555 0.262 -0.167 0.244 -1.789 -7.019 0.653 6 A_DC9:DG21_B A 9 ? B 21 ? 19 1 1 A DC 10 1_555 B DG 5 1_555 0.010 -0.177 -0.026 -1.091 -12.986 -0.764 7 A_DC10:DG18_B A 10 ? B 18 ? 19 1 1 A DG 11 1_555 B DC 4 1_555 0.033 -0.006 0.029 -6.898 -19.797 2.988 8 A_DG11:DC17_B A 11 ? B 17 ? 19 1 1 A DA 12 1_555 B DT 2 1_555 0.882 -0.173 -0.257 -5.654 -4.558 -5.340 9 A_DA12:DT15_B A 12 ? B 15 ? 20 1 1 A DA 13 1_555 B DT 1 1_555 1.889 -3.479 0.268 6.978 -5.229 81.647 10 A_DA13:DT14_B A 13 ? B 14 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 13 1_555 A DT 2 1_555 B DA 12 1_555 -0.715 2.900 3.187 1.102 -1.237 -12.889 -11.408 -1.907 3.497 5.479 4.883 -12.994 1 AA_DT1DT2:DA25DA26_BB A 1 ? B 26 ? A 2 ? B 25 ? 1 A DT 2 1_555 B DA 12 1_555 A DC 4 1_555 B DG 11 1_555 0.283 0.401 3.167 2.274 -3.151 39.032 0.961 -0.159 3.138 -4.701 -3.393 39.218 2 AA_DT2DC4:DG24DA25_BB A 2 ? B 25 ? A 4 ? B 24 ? 1 A DC 4 1_555 B DG 11 1_555 A DG 5 1_555 B DC 10 1_555 0.683 0.126 3.619 1.976 8.096 38.232 -0.899 -0.755 3.600 12.184 -2.975 39.097 3 AA_DC4DG5:DC23DG24_BB A 4 ? B 24 ? A 5 ? B 23 ? 1 A DG 5 1_555 B DC 10 1_555 A DG 8 1_555 B DC 9 1_555 2.104 -1.989 3.259 -2.801 10.851 18.967 -8.534 -6.369 1.577 29.796 7.690 22.004 4 AA_DG5DG8:DC22DC23_BB A 5 ? B 23 ? A 8 ? B 22 ? 1 A DG 8 1_555 B DC 9 1_555 A DC 9 1_555 B DG 8 1_555 -0.089 -2.304 3.368 -0.962 -3.399 35.217 -3.258 -0.003 3.568 -5.601 1.586 35.388 5 AA_DG8DC9:DG21DC22_BB A 8 ? B 22 ? A 9 ? B 21 ? 1 A DC 9 1_555 B DG 8 1_555 A DC 10 1_555 B DG 5 1_555 -1.948 -2.028 3.228 2.806 8.941 19.035 -8.520 6.239 1.799 25.157 -7.895 21.197 6 AA_DC9DC10:DG18DG21_BB A 9 ? B 21 ? A 10 ? B 18 ? 1 A DC 10 1_555 B DG 5 1_555 A DG 11 1_555 B DC 4 1_555 -0.638 0.200 3.602 -0.765 6.304 37.526 -0.581 0.872 3.600 9.714 1.179 38.040 7 AA_DC10DG11:DC17DG18_BB A 10 ? B 18 ? A 11 ? B 17 ? 1 A DG 11 1_555 B DC 4 1_555 A DA 12 1_555 B DT 2 1_555 -0.406 0.413 3.362 1.401 -3.438 38.053 1.073 0.800 3.298 -5.257 -2.142 38.227 8 AA_DG11DA12:DT15DC17_BB A 11 ? B 17 ? A 12 ? B 15 ? 1 A DA 12 1_555 B DT 2 1_555 A DA 13 1_555 B DT 1 1_555 2.932 -3.449 0.780 -175.611 15.573 123.890 -1.724 -1.460 -0.828 7.806 88.022 178.260 9 AA_DA12DA13:DT14DT15_BB A 12 ? B 15 ? A 13 ? B 14 ? # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 DDA 1 C DDA 1 C CDR 57 n C 2 DDA 2 C DDA 2 C CDR 58 n C 2 ERI 3 C ERI 3 C ERI 59 n D 3 2GL 1 D 2GL 1 C ARI 61 n D 3 1GL 2 D 1GL 2 C 1GL 60 n E 3 2GL 1 E 2GL 1 C ARI 55 n E 3 1GL 2 E 1GL 2 C 1GL 54 n F 2 DDA 1 F DDA 1 C CDR 63 n F 2 DDA 2 F DDA 2 C CDR 64 n F 2 ERI 3 F ERI 3 C ERI 65 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1GL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-2-deoxy-Fucp4OMe DDA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DOlib DDA 'COMMON NAME' GMML 1.0 b-D-Olivopyranose DDA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-2,6-deoxy-Glcp DDA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Oli # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'WURCS=2.0/2,3,2/[ad122m-1b_1-5][ad611m-1a_1-5_3*C_4*OCC/3=O]/1-1-2/a3-b1_b3-c1' WURCS PDB2Glycan 1.1.0 2 2 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{[(3+1)][a-L-2,6-deoxy-Glcp4Ac]{}}}' LINUCS PDB-CARE ? 3 3 'WURCS=2.0/2,2,1/[ad112m-1b_1-5_4*OCC/3=O][ad112m-1a_1-5_4*OC]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0 4 3 '[][b-D-2-deoxy-Fucp4Ac]{[(3+1)][a-D-2-deoxy-Fucp4Me]{}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 DDA C1 O1 1 DDA O3 HO3 sing ? 2 2 3 ERI C1 O1 2 DDA O3 HO3 sing ? 3 3 2 1GL C1 O1 1 2GL O3 HO3 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 DDA 1 n 2 DDA 2 n 2 ERI 3 n 3 2GL 1 n 3 1GL 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' CPH 5 'COBALT (II) ION' CO 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5XEW _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #