HEADER TRANSFERASE 05-MAY-17 5XK8 TITLE CRYSTAL STRUCTURE OF ISOSESQUILAVANDULYL DIPHOSPHATE SYNTHASE FROM TITLE 2 STREPTOMYCES SP. STRAIN CNH-189 IN COMPLEX WITH GPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNDECAPRENYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. CNH189; SOURCE 3 ORGANISM_TAXID: 1136432; SOURCE 4 GENE: MCL22; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET46EK/LIC KEYWDS PRENYLTRANSFERASE, ANTIBIOTIC BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.P.KO,R.T.GUO,W.LIU,C.C.CHEN,J.GAO REVDAT 4 22-NOV-23 5XK8 1 LINK REVDAT 3 24-JAN-18 5XK8 1 JRNL REVDAT 2 17-JAN-18 5XK8 1 JRNL REVDAT 1 10-JAN-18 5XK8 0 JRNL AUTH J.GAO,T.P.KO,L.CHEN,S.R.MALWAL,J.ZHANG,X.HU,F.QU,W.LIU, JRNL AUTH 2 J.W.HUANG,Y.S.CHENG,C.C.CHEN,Y.YANG,Y.ZHANG,E.OLDFIELD, JRNL AUTH 3 R.T.GUO JRNL TITL "HEAD-TO-MIDDLE" AND "HEAD-TO-TAIL" CIS-PRENYL TRANSFERASES: JRNL TITL 2 STRUCTURE OF ISOSESQUILAVANDULYL DIPHOSPHATE SYNTHASE. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 57 683 2018 JRNL REFN ESSN 1521-3773 JRNL PMID 29215779 JRNL DOI 10.1002/ANIE.201710185 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 42934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2122 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8680 - 5.6616 0.97 2842 147 0.1678 0.1771 REMARK 3 2 5.6616 - 4.5025 0.99 2787 132 0.1392 0.1777 REMARK 3 3 4.5025 - 3.9359 1.00 2722 191 0.1572 0.1741 REMARK 3 4 3.9359 - 3.5772 1.00 2768 129 0.1603 0.1859 REMARK 3 5 3.5772 - 3.3214 1.00 2775 123 0.1797 0.2183 REMARK 3 6 3.3214 - 3.1260 1.00 2698 134 0.2020 0.2279 REMARK 3 7 3.1260 - 2.9697 1.00 2745 130 0.2163 0.2339 REMARK 3 8 2.9697 - 2.8406 1.00 2700 166 0.2248 0.2539 REMARK 3 9 2.8406 - 2.7314 0.99 2698 142 0.2173 0.2657 REMARK 3 10 2.7314 - 2.6373 0.99 2706 139 0.2244 0.2726 REMARK 3 11 2.6373 - 2.5549 0.99 2679 146 0.2262 0.2821 REMARK 3 12 2.5549 - 2.4819 0.99 2686 123 0.2284 0.2893 REMARK 3 13 2.4819 - 2.4166 0.99 2673 137 0.2424 0.2886 REMARK 3 14 2.4166 - 2.3577 0.99 2710 152 0.2584 0.2864 REMARK 3 15 2.3577 - 2.3042 0.98 2623 131 0.2634 0.3609 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7039 REMARK 3 ANGLE : 0.611 9543 REMARK 3 CHIRALITY : 0.041 1038 REMARK 3 PLANARITY : 0.004 1233 REMARK 3 DIHEDRAL : 19.174 4192 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 9.3458 11.7008 -10.4700 REMARK 3 T TENSOR REMARK 3 T11: 0.2330 T22: 0.2392 REMARK 3 T33: 0.2664 T12: -0.0187 REMARK 3 T13: 0.0041 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.1640 L22: 0.4749 REMARK 3 L33: 0.8575 L12: -0.2430 REMARK 3 L13: 0.3372 L23: -0.3022 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: -0.0478 S13: 0.0084 REMARK 3 S21: -0.0231 S22: -0.0220 S23: 0.0126 REMARK 3 S31: -0.0498 S32: 0.0068 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XK8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300003674. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9998 REMARK 200 MONOCHROMATOR : LN2 COOLED SI(111) DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42982 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5XK3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 10 MG/ML IN 25 MM TRIS-CL (PH REMARK 280 7.5) AND 150 MM NACL RESERVOIR: 0.2 M (NH4)2SO4, 0.1 M MES PH REMARK 280 6.5, 30% PEG 5000MME SOAK: 5 MM MGCL2, 5 MM (NH4)4P2O7, 0.1 M REMARK 280 MES PH 6.5, 30% PEG 5000MME, 10 MM GPP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.67100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.62300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.57550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.62300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.67100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.57550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 ALA A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 VAL A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 LYS A -1 REMARK 465 MET B -14 REMARK 465 ALA B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 VAL B -6 REMARK 465 ASP B -5 REMARK 465 ASP B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 LYS B -1 REMARK 465 MET B 0 REMARK 465 ARG B 210 REMARK 465 ARG B 211 REMARK 465 TYR B 212 REMARK 465 GLY B 213 REMARK 465 LEU B 214 REMARK 465 TYR B 215 REMARK 465 PRO B 216 REMARK 465 VAL B 217 REMARK 465 MET C -14 REMARK 465 ALA C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 HIS C -9 REMARK 465 HIS C -8 REMARK 465 HIS C -7 REMARK 465 VAL C -6 REMARK 465 ASP C -5 REMARK 465 ASP C -4 REMARK 465 ASP C -3 REMARK 465 ASP C -2 REMARK 465 ARG C 211 REMARK 465 TYR C 212 REMARK 465 GLY C 213 REMARK 465 LEU C 214 REMARK 465 TYR C 215 REMARK 465 PRO C 216 REMARK 465 VAL C 217 REMARK 465 MET D -14 REMARK 465 ALA D -13 REMARK 465 HIS D -12 REMARK 465 HIS D -11 REMARK 465 HIS D -10 REMARK 465 HIS D -9 REMARK 465 HIS D -8 REMARK 465 HIS D -7 REMARK 465 VAL D -6 REMARK 465 ASP D -5 REMARK 465 ASP D -4 REMARK 465 ASP D -3 REMARK 465 ASP D -2 REMARK 465 LYS D -1 REMARK 465 MET D 0 REMARK 465 ARG D 211 REMARK 465 TYR D 212 REMARK 465 GLY D 213 REMARK 465 LEU D 214 REMARK 465 TYR D 215 REMARK 465 PRO D 216 REMARK 465 VAL D 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2B GPP C 501 O HOH C 601 2.06 REMARK 500 O HOH C 601 O HOH C 637 2.14 REMARK 500 OE1 GLN A 18 O HOH A 601 2.16 REMARK 500 OE2 GLU D 96 OG1 THR D 100 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 124 115.97 -177.30 REMARK 500 SER A 171 -133.89 52.14 REMARK 500 MET A 177 33.45 -99.20 REMARK 500 SER B 124 118.58 -177.72 REMARK 500 MET B 177 38.91 -98.27 REMARK 500 SER C 124 117.31 -177.73 REMARK 500 SER C 171 -129.13 52.40 REMARK 500 MET C 177 39.26 -98.38 REMARK 500 SER D 124 116.61 -177.78 REMARK 500 SER D 171 -130.54 53.73 REMARK 500 MET D 177 37.40 -98.80 REMARK 500 ARG D 208 12.86 -66.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 746 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B 729 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B 730 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH C 724 DISTANCE = 7.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 500 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 9 OD1 REMARK 620 2 GPP B 501 O1A 101.8 REMARK 620 3 HOH B 601 O 129.8 59.7 REMARK 620 4 HOH B 696 O 92.5 116.3 137.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GPP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GPP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GPP C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GPP D 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XK3 RELATED DB: PDB REMARK 900 RELATED ID: 5XK6 RELATED DB: PDB REMARK 900 RELATED ID: 5XK7 RELATED DB: PDB REMARK 900 RELATED ID: 5XK9 RELATED DB: PDB DBREF 5XK8 A 1 217 UNP M4T4U9 M4T4U9_9ACTN 1 217 DBREF 5XK8 B 1 217 UNP M4T4U9 M4T4U9_9ACTN 1 217 DBREF 5XK8 C 1 217 UNP M4T4U9 M4T4U9_9ACTN 1 217 DBREF 5XK8 D 1 217 UNP M4T4U9 M4T4U9_9ACTN 1 217 SEQADV 5XK8 MET A -14 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ALA A -13 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS A -12 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS A -11 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS A -10 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS A -9 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS A -8 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS A -7 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 VAL A -6 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ASP A -5 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ASP A -4 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ASP A -3 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ASP A -2 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 LYS A -1 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 MET A 0 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 MET B -14 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ALA B -13 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS B -12 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS B -11 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS B -10 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS B -9 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS B -8 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS B -7 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 VAL B -6 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ASP B -5 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ASP B -4 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ASP B -3 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ASP B -2 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 LYS B -1 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 MET B 0 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 MET C -14 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ALA C -13 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS C -12 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS C -11 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS C -10 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS C -9 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS C -8 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS C -7 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 VAL C -6 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ASP C -5 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ASP C -4 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ASP C -3 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ASP C -2 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 LYS C -1 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 MET C 0 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 MET D -14 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ALA D -13 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS D -12 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS D -11 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS D -10 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS D -9 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS D -8 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 HIS D -7 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 VAL D -6 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ASP D -5 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ASP D -4 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ASP D -3 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 ASP D -2 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 LYS D -1 UNP M4T4U9 EXPRESSION TAG SEQADV 5XK8 MET D 0 UNP M4T4U9 EXPRESSION TAG SEQRES 1 A 232 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 232 LYS MET MET THR ASN LEU MET LEU LEU PRO ASP GLY MET SEQRES 3 A 232 ARG ARG TRP SER GLN LYS GLN GLY ILE SER LEU ASP ASP SEQRES 4 A 232 SER TYR ALA ALA MET THR ASP LYS LEU VAL GLU PHE THR SEQRES 5 A 232 GLY TRP ALA ARG GLU GLU GLY PHE THR THR PHE TYR VAL SEQRES 6 A 232 THR VAL SER SER VAL ALA ASN TYR SER ARG SER GLU GLU SEQRES 7 A 232 GLN VAL THR THR ALA MET ASN ALA PHE THR GLU VAL VAL SEQRES 8 A 232 ARG ARG CYS HIS ASP THR LEU ASN PHE ASN TYR SER GLY SEQRES 9 A 232 THR LEU GLU VAL VAL PRO GLU ARG TRP LEU THR GLU LEU SEQRES 10 A 232 GLU ALA LEU ARG ALA LYS SER ASP SER GLN SER ASP PHE SEQRES 11 A 232 THR LEU HIS PHE ILE MET GLY MET SER LEU ALA HIS GLU SEQRES 12 A 232 VAL ILE GLY ILE PHE ASN LYS PHE ASN GLY LYS ILE PRO SEQRES 13 A 232 ALA LEU THR GLU GLU LEU LEU ALA ALA ASN ALA TYR VAL SEQRES 14 A 232 PRO GLU PRO VAL ASP PHE LEU ILE ARG PRO GLY GLY HIS SEQRES 15 A 232 VAL ARG MET SER SER PHE TYR PRO LEU MET SER PRO PHE SEQRES 16 A 232 ALA GLU MET TYR PHE CYS PRO THR LEU LEU ASN ASP MET SEQRES 17 A 232 THR ARG ALA ASP PHE ASP VAL ALA LEU GLU ASP LEU ARG SEQRES 18 A 232 GLU ARG ASP ARG ARG TYR GLY LEU TYR PRO VAL SEQRES 1 B 232 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 B 232 LYS MET MET THR ASN LEU MET LEU LEU PRO ASP GLY MET SEQRES 3 B 232 ARG ARG TRP SER GLN LYS GLN GLY ILE SER LEU ASP ASP SEQRES 4 B 232 SER TYR ALA ALA MET THR ASP LYS LEU VAL GLU PHE THR SEQRES 5 B 232 GLY TRP ALA ARG GLU GLU GLY PHE THR THR PHE TYR VAL SEQRES 6 B 232 THR VAL SER SER VAL ALA ASN TYR SER ARG SER GLU GLU SEQRES 7 B 232 GLN VAL THR THR ALA MET ASN ALA PHE THR GLU VAL VAL SEQRES 8 B 232 ARG ARG CYS HIS ASP THR LEU ASN PHE ASN TYR SER GLY SEQRES 9 B 232 THR LEU GLU VAL VAL PRO GLU ARG TRP LEU THR GLU LEU SEQRES 10 B 232 GLU ALA LEU ARG ALA LYS SER ASP SER GLN SER ASP PHE SEQRES 11 B 232 THR LEU HIS PHE ILE MET GLY MET SER LEU ALA HIS GLU SEQRES 12 B 232 VAL ILE GLY ILE PHE ASN LYS PHE ASN GLY LYS ILE PRO SEQRES 13 B 232 ALA LEU THR GLU GLU LEU LEU ALA ALA ASN ALA TYR VAL SEQRES 14 B 232 PRO GLU PRO VAL ASP PHE LEU ILE ARG PRO GLY GLY HIS SEQRES 15 B 232 VAL ARG MET SER SER PHE TYR PRO LEU MET SER PRO PHE SEQRES 16 B 232 ALA GLU MET TYR PHE CYS PRO THR LEU LEU ASN ASP MET SEQRES 17 B 232 THR ARG ALA ASP PHE ASP VAL ALA LEU GLU ASP LEU ARG SEQRES 18 B 232 GLU ARG ASP ARG ARG TYR GLY LEU TYR PRO VAL SEQRES 1 C 232 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 C 232 LYS MET MET THR ASN LEU MET LEU LEU PRO ASP GLY MET SEQRES 3 C 232 ARG ARG TRP SER GLN LYS GLN GLY ILE SER LEU ASP ASP SEQRES 4 C 232 SER TYR ALA ALA MET THR ASP LYS LEU VAL GLU PHE THR SEQRES 5 C 232 GLY TRP ALA ARG GLU GLU GLY PHE THR THR PHE TYR VAL SEQRES 6 C 232 THR VAL SER SER VAL ALA ASN TYR SER ARG SER GLU GLU SEQRES 7 C 232 GLN VAL THR THR ALA MET ASN ALA PHE THR GLU VAL VAL SEQRES 8 C 232 ARG ARG CYS HIS ASP THR LEU ASN PHE ASN TYR SER GLY SEQRES 9 C 232 THR LEU GLU VAL VAL PRO GLU ARG TRP LEU THR GLU LEU SEQRES 10 C 232 GLU ALA LEU ARG ALA LYS SER ASP SER GLN SER ASP PHE SEQRES 11 C 232 THR LEU HIS PHE ILE MET GLY MET SER LEU ALA HIS GLU SEQRES 12 C 232 VAL ILE GLY ILE PHE ASN LYS PHE ASN GLY LYS ILE PRO SEQRES 13 C 232 ALA LEU THR GLU GLU LEU LEU ALA ALA ASN ALA TYR VAL SEQRES 14 C 232 PRO GLU PRO VAL ASP PHE LEU ILE ARG PRO GLY GLY HIS SEQRES 15 C 232 VAL ARG MET SER SER PHE TYR PRO LEU MET SER PRO PHE SEQRES 16 C 232 ALA GLU MET TYR PHE CYS PRO THR LEU LEU ASN ASP MET SEQRES 17 C 232 THR ARG ALA ASP PHE ASP VAL ALA LEU GLU ASP LEU ARG SEQRES 18 C 232 GLU ARG ASP ARG ARG TYR GLY LEU TYR PRO VAL SEQRES 1 D 232 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 D 232 LYS MET MET THR ASN LEU MET LEU LEU PRO ASP GLY MET SEQRES 3 D 232 ARG ARG TRP SER GLN LYS GLN GLY ILE SER LEU ASP ASP SEQRES 4 D 232 SER TYR ALA ALA MET THR ASP LYS LEU VAL GLU PHE THR SEQRES 5 D 232 GLY TRP ALA ARG GLU GLU GLY PHE THR THR PHE TYR VAL SEQRES 6 D 232 THR VAL SER SER VAL ALA ASN TYR SER ARG SER GLU GLU SEQRES 7 D 232 GLN VAL THR THR ALA MET ASN ALA PHE THR GLU VAL VAL SEQRES 8 D 232 ARG ARG CYS HIS ASP THR LEU ASN PHE ASN TYR SER GLY SEQRES 9 D 232 THR LEU GLU VAL VAL PRO GLU ARG TRP LEU THR GLU LEU SEQRES 10 D 232 GLU ALA LEU ARG ALA LYS SER ASP SER GLN SER ASP PHE SEQRES 11 D 232 THR LEU HIS PHE ILE MET GLY MET SER LEU ALA HIS GLU SEQRES 12 D 232 VAL ILE GLY ILE PHE ASN LYS PHE ASN GLY LYS ILE PRO SEQRES 13 D 232 ALA LEU THR GLU GLU LEU LEU ALA ALA ASN ALA TYR VAL SEQRES 14 D 232 PRO GLU PRO VAL ASP PHE LEU ILE ARG PRO GLY GLY HIS SEQRES 15 D 232 VAL ARG MET SER SER PHE TYR PRO LEU MET SER PRO PHE SEQRES 16 D 232 ALA GLU MET TYR PHE CYS PRO THR LEU LEU ASN ASP MET SEQRES 17 D 232 THR ARG ALA ASP PHE ASP VAL ALA LEU GLU ASP LEU ARG SEQRES 18 D 232 GLU ARG ASP ARG ARG TYR GLY LEU TYR PRO VAL HET GPP A 501 19 HET MG B 500 1 HET GPP B 501 19 HET GPP C 501 19 HET GPP D 501 19 HETNAM GPP GERANYL DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 5 GPP 4(C10 H20 O7 P2) FORMUL 6 MG MG 2+ FORMUL 10 HOH *478(H2 O) HELIX 1 AA1 GLY A 10 GLY A 19 1 10 HELIX 2 AA2 SER A 21 GLU A 43 1 23 HELIX 3 AA3 VAL A 55 ARG A 60 5 6 HELIX 4 AA4 SER A 61 HIS A 80 1 20 HELIX 5 AA5 ASP A 81 LEU A 83 5 3 HELIX 6 AA6 LEU A 91 VAL A 94 5 4 HELIX 7 AA7 PRO A 95 SER A 109 1 15 HELIX 8 AA8 SER A 124 ASN A 137 1 14 HELIX 9 AA9 THR A 144 ALA A 152 1 9 HELIX 10 AB1 LEU A 189 MET A 193 5 5 HELIX 11 AB2 THR A 194 ARG A 208 1 15 HELIX 12 AB3 GLY B 10 GLY B 19 1 10 HELIX 13 AB4 SER B 21 GLU B 43 1 23 HELIX 14 AB5 VAL B 55 ARG B 60 5 6 HELIX 15 AB6 SER B 61 HIS B 80 1 20 HELIX 16 AB7 ASP B 81 LEU B 83 5 3 HELIX 17 AB8 LEU B 91 VAL B 94 5 4 HELIX 18 AB9 PRO B 95 LYS B 108 1 14 HELIX 19 AC1 SER B 124 ASN B 137 1 14 HELIX 20 AC2 THR B 144 ALA B 152 1 9 HELIX 21 AC3 LEU B 189 MET B 193 5 5 HELIX 22 AC4 THR B 194 ARG B 208 1 15 HELIX 23 AC5 GLY C 10 GLY C 19 1 10 HELIX 24 AC6 SER C 21 GLU C 43 1 23 HELIX 25 AC7 VAL C 55 ARG C 60 5 6 HELIX 26 AC8 SER C 61 HIS C 80 1 20 HELIX 27 AC9 ASP C 81 LEU C 83 5 3 HELIX 28 AD1 LEU C 91 VAL C 94 5 4 HELIX 29 AD2 PRO C 95 LYS C 108 1 14 HELIX 30 AD3 SER C 124 ASN C 137 1 14 HELIX 31 AD4 THR C 144 ALA C 152 1 9 HELIX 32 AD5 LEU C 189 MET C 193 5 5 HELIX 33 AD6 THR C 194 ARG C 208 1 15 HELIX 34 AD7 GLY D 10 GLY D 19 1 10 HELIX 35 AD8 SER D 21 GLU D 43 1 23 HELIX 36 AD9 VAL D 55 ARG D 60 5 6 HELIX 37 AE1 SER D 61 HIS D 80 1 20 HELIX 38 AE2 ASP D 81 LEU D 83 5 3 HELIX 39 AE3 LEU D 91 VAL D 94 5 4 HELIX 40 AE4 PRO D 95 SER D 109 1 15 HELIX 41 AE5 SER D 124 ASN D 137 1 14 HELIX 42 AE6 THR D 144 ALA D 152 1 9 HELIX 43 AE7 LEU D 189 MET D 193 5 5 HELIX 44 AE8 THR D 194 ARG D 208 1 15 SHEET 1 AA1 6 ASN A 84 GLY A 89 0 SHEET 2 AA1 6 THR A 116 MET A 121 1 O MET A 121 N SER A 88 SHEET 3 AA1 6 THR A 47 THR A 51 1 N PHE A 48 O THR A 116 SHEET 4 AA1 6 LEU A 4 LEU A 6 1 N LEU A 4 O TYR A 49 SHEET 5 AA1 6 PHE A 160 ARG A 163 1 O ILE A 162 N MET A 5 SHEET 6 AA1 6 GLU A 182 PHE A 185 1 O TYR A 184 N ARG A 163 SHEET 1 AA2 6 ASN B 84 GLY B 89 0 SHEET 2 AA2 6 THR B 116 MET B 121 1 O LEU B 117 N ASN B 84 SHEET 3 AA2 6 THR B 47 THR B 51 1 N PHE B 48 O THR B 116 SHEET 4 AA2 6 ASN B 3 LEU B 6 1 N LEU B 4 O TYR B 49 SHEET 5 AA2 6 PHE B 160 PRO B 164 1 O ILE B 162 N MET B 5 SHEET 6 AA2 6 GLU B 182 CYS B 186 1 O TYR B 184 N ARG B 163 SHEET 1 AA3 6 ASN C 84 GLY C 89 0 SHEET 2 AA3 6 THR C 116 MET C 121 1 O MET C 121 N SER C 88 SHEET 3 AA3 6 THR C 47 THR C 51 1 N PHE C 48 O THR C 116 SHEET 4 AA3 6 LEU C 4 LEU C 6 1 N LEU C 4 O TYR C 49 SHEET 5 AA3 6 PHE C 160 PRO C 164 1 O ILE C 162 N MET C 5 SHEET 6 AA3 6 GLU C 182 CYS C 186 1 O TYR C 184 N ARG C 163 SHEET 1 AA4 6 ASN D 84 GLY D 89 0 SHEET 2 AA4 6 THR D 116 MET D 121 1 O LEU D 117 N ASN D 84 SHEET 3 AA4 6 THR D 47 THR D 51 1 N PHE D 48 O THR D 116 SHEET 4 AA4 6 ASN D 3 LEU D 6 1 N LEU D 4 O TYR D 49 SHEET 5 AA4 6 PHE D 160 PRO D 164 1 O ILE D 162 N MET D 5 SHEET 6 AA4 6 GLU D 182 CYS D 186 1 O TYR D 184 N ARG D 163 LINK OD1 ASP B 9 MG MG B 500 1555 1555 2.34 LINK MG MG B 500 O1A GPP B 501 1555 1555 2.64 LINK MG MG B 500 O HOH B 601 1555 1555 2.87 LINK MG MG B 500 O HOH B 696 1555 1555 2.98 SITE 1 AC1 15 PRO A 8 ASP A 9 GLY A 10 MET A 11 SITE 2 AC1 15 ARG A 12 ARG A 13 TYR A 26 VAL A 52 SITE 3 AC1 15 ASN A 57 TYR A 58 ARG A 60 ALA A 68 SITE 4 AC1 15 HOH A 602 HOH A 619 HOH A 676 SITE 1 AC2 4 ASP B 9 GPP B 501 HOH B 601 HOH B 696 SITE 1 AC3 14 TYR A 215 PRO B 8 ASP B 9 GLY B 10 SITE 2 AC3 14 MET B 11 ARG B 12 ARG B 13 TYR B 26 SITE 3 AC3 14 VAL B 52 ASN B 57 ARG B 60 ALA B 68 SITE 4 AC3 14 MG B 500 HOH B 601 SITE 1 AC4 12 PRO C 8 ASP C 9 GLY C 10 MET C 11 SITE 2 AC4 12 ARG C 12 ARG C 13 TYR C 26 ASN C 57 SITE 3 AC4 12 ARG C 60 ALA C 68 HOH C 601 HOH C 610 SITE 1 AC5 9 PRO D 8 ASP D 9 GLY D 10 MET D 11 SITE 2 AC5 9 ARG D 12 ARG D 13 TYR D 26 ARG D 60 SITE 3 AC5 9 ALA D 68 CRYST1 65.342 121.151 121.246 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015304 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008254 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008248 0.00000