HEADER TRANSFERASE/DNA 13-MAY-17 5XM8 TITLE CRYSTAL STRUCTURE OF ASFVPOLX IN COMPLEX WITH DNA ENZYME AND PB. COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPAIR DNA POLYMERASE X; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: POL X; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (36-MER); COMPND 9 CHAIN: E, G; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (23-MER); COMPND 13 CHAIN: F, H; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AFRICAN SWINE FEVER VIRUS (STRAIN BADAJOZ 1971 SOURCE 3 VERO-ADAPTED); SOURCE 4 ORGANISM_COMMON: BA71V; SOURCE 5 ORGANISM_TAXID: 10498; SOURCE 6 STRAIN: BADAJOZ 1971 VERO-ADAPTED; SOURCE 7 GENE: BA71V-97, O174L; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS POLX, DNA ENZYME, PB, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.H.LIU,J.H.GAN REVDAT 2 22-NOV-23 5XM8 1 REMARK REVDAT 1 24-JAN-18 5XM8 0 JRNL AUTH H.LIU,X.YU,Y.CHEN,J.ZHANG,B.WU,L.ZHENG,P.HARUEHANROENGRA, JRNL AUTH 2 R.WANG,S.LI,J.LIN,J.LI,J.SHENG,Z.HUANG,J.MA,J.GAN JRNL TITL CRYSTAL STRUCTURE OF AN RNA-CLEAVING DNAZYME. JRNL REF NAT COMMUN V. 8 2006 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29222499 JRNL DOI 10.1038/S41467-017-02203-X REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.500 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 44952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7140 - 6.4055 1.00 2851 149 0.1645 0.2300 REMARK 3 2 6.4055 - 5.0926 1.00 2763 145 0.1946 0.2336 REMARK 3 3 5.0926 - 4.4513 1.00 2697 179 0.1883 0.2254 REMARK 3 4 4.4513 - 4.0454 1.00 2695 158 0.1830 0.2583 REMARK 3 5 4.0454 - 3.7560 1.00 2697 148 0.2194 0.2838 REMARK 3 6 3.7560 - 3.5350 1.00 2675 141 0.2296 0.3218 REMARK 3 7 3.5350 - 3.3582 0.99 2666 141 0.2310 0.2938 REMARK 3 8 3.3582 - 3.2122 0.99 2671 135 0.2330 0.3025 REMARK 3 9 3.2122 - 3.0886 0.99 2657 121 0.2645 0.2753 REMARK 3 10 3.0886 - 2.9822 0.98 2645 129 0.3147 0.3723 REMARK 3 11 2.9822 - 2.8890 0.99 2635 159 0.3509 0.3998 REMARK 3 12 2.8890 - 2.8065 0.98 2662 130 0.3583 0.4001 REMARK 3 13 2.8065 - 2.7327 0.98 2582 149 0.3831 0.3798 REMARK 3 14 2.7327 - 2.6660 0.97 2580 128 0.3947 0.4169 REMARK 3 15 2.6660 - 2.6055 0.97 2626 136 0.4035 0.4295 REMARK 3 16 2.6055 - 2.5500 0.96 2566 136 0.4179 0.4444 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.660 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 8618 REMARK 3 ANGLE : 0.916 12113 REMARK 3 CHIRALITY : 0.040 1384 REMARK 3 PLANARITY : 0.003 1075 REMARK 3 DIHEDRAL : 21.611 3485 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 20.2968 29.8983 -42.0638 REMARK 3 T TENSOR REMARK 3 T11: 0.8062 T22: 0.7663 REMARK 3 T33: 0.5006 T12: -0.1252 REMARK 3 T13: 0.0438 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: -0.0726 L22: 0.3200 REMARK 3 L33: 0.3480 L12: -0.3143 REMARK 3 L13: -0.3389 L23: -0.1118 REMARK 3 S TENSOR REMARK 3 S11: 0.0980 S12: 0.1269 S13: 0.0071 REMARK 3 S21: -0.4375 S22: -0.1445 S23: -0.1073 REMARK 3 S31: 0.1318 S32: -0.1839 S33: 0.0437 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300003769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45470 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HRB REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M DI-AMMONIUM HYDROGEN PHOSPHATE, REMARK 280 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.98950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 117.98950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.36350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.42400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.36350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.42400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.98950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.36350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.42400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.98950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.36350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.42400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 GLY D -2 REMARK 465 GLY D -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 CB OG REMARK 470 SER B 0 CB OG REMARK 470 SER C 0 CB OG REMARK 470 SER D 0 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG E 7 O3' DC E 8 P -0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT E 3 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC E 13 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG E 16 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT E 33 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG F 3 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG F 13 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG F 16 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT G 21 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG G 23 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA G 26 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT G 27 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 DC G 34 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DA H 6 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG H 9 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA H 10 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT H 11 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 -131.14 53.15 REMARK 500 VAL A 37 -163.87 -127.65 REMARK 500 CYS A 86 81.34 -156.70 REMARK 500 VAL B 37 -163.30 -128.00 REMARK 500 CYS B 86 81.58 -158.70 REMARK 500 CYS C 86 80.06 -156.71 REMARK 500 ASN D 23 -0.64 58.92 REMARK 500 VAL D 37 -162.99 -128.95 REMARK 500 CYS D 86 81.37 -157.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PB E 101 PB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG E 16 O6 REMARK 620 2 HOH F 101 O 94.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PB E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 201 DBREF 5XM8 A 1 174 UNP P42494 DPOLX_ASFB7 1 174 DBREF 5XM8 B 1 174 UNP P42494 DPOLX_ASFB7 1 174 DBREF 5XM8 E 1 36 PDB 5XM8 5XM8 1 36 DBREF 5XM8 F 1 23 PDB 5XM8 5XM8 1 23 DBREF 5XM8 C 1 174 UNP P42494 DPOLX_ASFB7 1 174 DBREF 5XM8 D 1 174 UNP P42494 DPOLX_ASFB7 1 174 DBREF 5XM8 G 1 36 PDB 5XM8 5XM8 1 36 DBREF 5XM8 H 1 23 PDB 5XM8 5XM8 1 23 SEQADV 5XM8 GLY A -2 UNP P42494 EXPRESSION TAG SEQADV 5XM8 GLY A -1 UNP P42494 EXPRESSION TAG SEQADV 5XM8 SER A 0 UNP P42494 EXPRESSION TAG SEQADV 5XM8 GLY B -2 UNP P42494 EXPRESSION TAG SEQADV 5XM8 GLY B -1 UNP P42494 EXPRESSION TAG SEQADV 5XM8 SER B 0 UNP P42494 EXPRESSION TAG SEQADV 5XM8 GLY C -2 UNP P42494 EXPRESSION TAG SEQADV 5XM8 GLY C -1 UNP P42494 EXPRESSION TAG SEQADV 5XM8 SER C 0 UNP P42494 EXPRESSION TAG SEQADV 5XM8 GLY D -2 UNP P42494 EXPRESSION TAG SEQADV 5XM8 GLY D -1 UNP P42494 EXPRESSION TAG SEQADV 5XM8 SER D 0 UNP P42494 EXPRESSION TAG SEQRES 1 A 177 GLY GLY SER MET LEU THR LEU ILE GLN GLY LYS LYS ILE SEQRES 2 A 177 VAL ASN HIS LEU ARG SER ARG LEU ALA PHE GLU TYR ASN SEQRES 3 A 177 GLY GLN LEU ILE LYS ILE LEU SER LYS ASN ILE VAL ALA SEQRES 4 A 177 VAL GLY SER LEU ARG ARG GLU GLU LYS MET LEU ASN ASP SEQRES 5 A 177 VAL ASP LEU LEU ILE ILE VAL PRO GLU LYS LYS LEU LEU SEQRES 6 A 177 LYS HIS VAL LEU PRO ASN ILE ARG ILE LYS GLY LEU SER SEQRES 7 A 177 PHE SER VAL LYS VAL CYS GLY GLU ARG LYS CYS VAL LEU SEQRES 8 A 177 PHE ILE GLU TRP GLU LYS LYS THR TYR GLN LEU ASP LEU SEQRES 9 A 177 PHE THR ALA LEU ALA GLU GLU LYS PRO TYR ALA ILE PHE SEQRES 10 A 177 HIS PHE THR GLY PRO VAL SER TYR LEU ILE ARG ILE ARG SEQRES 11 A 177 ALA ALA LEU LYS LYS LYS ASN TYR LYS LEU ASN GLN TYR SEQRES 12 A 177 GLY LEU PHE LYS ASN GLN THR LEU VAL PRO LEU LYS ILE SEQRES 13 A 177 THR THR GLU LYS GLU LEU ILE LYS GLU LEU GLY PHE THR SEQRES 14 A 177 TYR ARG ILE PRO LYS LYS ARG LEU SEQRES 1 B 177 GLY GLY SER MET LEU THR LEU ILE GLN GLY LYS LYS ILE SEQRES 2 B 177 VAL ASN HIS LEU ARG SER ARG LEU ALA PHE GLU TYR ASN SEQRES 3 B 177 GLY GLN LEU ILE LYS ILE LEU SER LYS ASN ILE VAL ALA SEQRES 4 B 177 VAL GLY SER LEU ARG ARG GLU GLU LYS MET LEU ASN ASP SEQRES 5 B 177 VAL ASP LEU LEU ILE ILE VAL PRO GLU LYS LYS LEU LEU SEQRES 6 B 177 LYS HIS VAL LEU PRO ASN ILE ARG ILE LYS GLY LEU SER SEQRES 7 B 177 PHE SER VAL LYS VAL CYS GLY GLU ARG LYS CYS VAL LEU SEQRES 8 B 177 PHE ILE GLU TRP GLU LYS LYS THR TYR GLN LEU ASP LEU SEQRES 9 B 177 PHE THR ALA LEU ALA GLU GLU LYS PRO TYR ALA ILE PHE SEQRES 10 B 177 HIS PHE THR GLY PRO VAL SER TYR LEU ILE ARG ILE ARG SEQRES 11 B 177 ALA ALA LEU LYS LYS LYS ASN TYR LYS LEU ASN GLN TYR SEQRES 12 B 177 GLY LEU PHE LYS ASN GLN THR LEU VAL PRO LEU LYS ILE SEQRES 13 B 177 THR THR GLU LYS GLU LEU ILE LYS GLU LEU GLY PHE THR SEQRES 14 B 177 TYR ARG ILE PRO LYS LYS ARG LEU SEQRES 1 E 36 DT DG DT DA DA DC DG DC DA DC DT DG DC SEQRES 2 E 36 DC DA DG DC DG DG DC DT DC DG DA DA DA SEQRES 3 E 36 DT DC DT DC DT DC DT DC DG DT SEQRES 1 F 23 DA DC DG DA DG DA DG DA DG DA DT DG DG SEQRES 2 F 23 DG DT DG DC DG DT DT DA DC DA SEQRES 1 C 177 GLY GLY SER MET LEU THR LEU ILE GLN GLY LYS LYS ILE SEQRES 2 C 177 VAL ASN HIS LEU ARG SER ARG LEU ALA PHE GLU TYR ASN SEQRES 3 C 177 GLY GLN LEU ILE LYS ILE LEU SER LYS ASN ILE VAL ALA SEQRES 4 C 177 VAL GLY SER LEU ARG ARG GLU GLU LYS MET LEU ASN ASP SEQRES 5 C 177 VAL ASP LEU LEU ILE ILE VAL PRO GLU LYS LYS LEU LEU SEQRES 6 C 177 LYS HIS VAL LEU PRO ASN ILE ARG ILE LYS GLY LEU SER SEQRES 7 C 177 PHE SER VAL LYS VAL CYS GLY GLU ARG LYS CYS VAL LEU SEQRES 8 C 177 PHE ILE GLU TRP GLU LYS LYS THR TYR GLN LEU ASP LEU SEQRES 9 C 177 PHE THR ALA LEU ALA GLU GLU LYS PRO TYR ALA ILE PHE SEQRES 10 C 177 HIS PHE THR GLY PRO VAL SER TYR LEU ILE ARG ILE ARG SEQRES 11 C 177 ALA ALA LEU LYS LYS LYS ASN TYR LYS LEU ASN GLN TYR SEQRES 12 C 177 GLY LEU PHE LYS ASN GLN THR LEU VAL PRO LEU LYS ILE SEQRES 13 C 177 THR THR GLU LYS GLU LEU ILE LYS GLU LEU GLY PHE THR SEQRES 14 C 177 TYR ARG ILE PRO LYS LYS ARG LEU SEQRES 1 D 177 GLY GLY SER MET LEU THR LEU ILE GLN GLY LYS LYS ILE SEQRES 2 D 177 VAL ASN HIS LEU ARG SER ARG LEU ALA PHE GLU TYR ASN SEQRES 3 D 177 GLY GLN LEU ILE LYS ILE LEU SER LYS ASN ILE VAL ALA SEQRES 4 D 177 VAL GLY SER LEU ARG ARG GLU GLU LYS MET LEU ASN ASP SEQRES 5 D 177 VAL ASP LEU LEU ILE ILE VAL PRO GLU LYS LYS LEU LEU SEQRES 6 D 177 LYS HIS VAL LEU PRO ASN ILE ARG ILE LYS GLY LEU SER SEQRES 7 D 177 PHE SER VAL LYS VAL CYS GLY GLU ARG LYS CYS VAL LEU SEQRES 8 D 177 PHE ILE GLU TRP GLU LYS LYS THR TYR GLN LEU ASP LEU SEQRES 9 D 177 PHE THR ALA LEU ALA GLU GLU LYS PRO TYR ALA ILE PHE SEQRES 10 D 177 HIS PHE THR GLY PRO VAL SER TYR LEU ILE ARG ILE ARG SEQRES 11 D 177 ALA ALA LEU LYS LYS LYS ASN TYR LYS LEU ASN GLN TYR SEQRES 12 D 177 GLY LEU PHE LYS ASN GLN THR LEU VAL PRO LEU LYS ILE SEQRES 13 D 177 THR THR GLU LYS GLU LEU ILE LYS GLU LEU GLY PHE THR SEQRES 14 D 177 TYR ARG ILE PRO LYS LYS ARG LEU SEQRES 1 G 36 DT DG DT DA DA DC DG DC DA DC DT DG DC SEQRES 2 G 36 DC DA DG DC DG DG DC DT DC DG DA DA DA SEQRES 3 G 36 DT DC DT DC DT DC DT DC DG DT SEQRES 1 H 23 DA DC DG DA DG DA DG DA DG DA DT DG DG SEQRES 2 H 23 DG DT DG DC DG DT DT DA DC DA HET PO4 B 501 5 HET PO4 B 502 5 HET PO4 B 503 5 HET PB E 101 1 HET PO4 D 201 5 HETNAM PO4 PHOSPHATE ION HETNAM PB LEAD (II) ION FORMUL 9 PO4 4(O4 P 3-) FORMUL 12 PB PB 2+ FORMUL 14 HOH *20(H2 O) HELIX 1 AA1 LEU A 4 ARG A 15 1 12 HELIX 2 AA2 LEU A 30 LYS A 32 5 3 HELIX 3 AA3 GLY A 38 ARG A 41 5 4 HELIX 4 AA4 GLU A 58 LYS A 60 5 3 HELIX 5 AA5 LEU A 61 LEU A 66 1 6 HELIX 6 AA6 GLU A 108 GLY A 118 1 11 HELIX 7 AA7 PRO A 119 LYS A 132 1 14 HELIX 8 AA8 THR A 155 LEU A 163 1 9 HELIX 9 AA9 ILE A 169 ARG A 173 5 5 HELIX 10 AB1 LEU B 4 ARG B 15 1 12 HELIX 11 AB2 LEU B 30 LYS B 32 5 3 HELIX 12 AB3 GLY B 38 ARG B 41 5 4 HELIX 13 AB4 GLU B 58 LYS B 60 5 3 HELIX 14 AB5 LEU B 61 LEU B 66 1 6 HELIX 15 AB6 GLU B 108 GLY B 118 1 11 HELIX 16 AB7 PRO B 119 LYS B 132 1 14 HELIX 17 AB8 THR B 155 LEU B 163 1 9 HELIX 18 AB9 ILE B 169 ARG B 173 5 5 HELIX 19 AC1 LEU C 4 ARG C 15 1 12 HELIX 20 AC2 LEU C 30 LYS C 32 5 3 HELIX 21 AC3 GLY C 38 ARG C 41 5 4 HELIX 22 AC4 GLU C 58 LYS C 60 5 3 HELIX 23 AC5 LEU C 61 LEU C 66 1 6 HELIX 24 AC6 GLU C 108 GLY C 118 1 11 HELIX 25 AC7 PRO C 119 LYS C 132 1 14 HELIX 26 AC8 THR C 155 LEU C 163 1 9 HELIX 27 AC9 ILE C 169 ARG C 173 5 5 HELIX 28 AD1 LEU D 4 ARG D 15 1 12 HELIX 29 AD2 LEU D 30 LYS D 32 5 3 HELIX 30 AD3 GLY D 38 ARG D 41 5 4 HELIX 31 AD4 GLU D 58 LYS D 60 5 3 HELIX 32 AD5 LEU D 61 LEU D 66 1 6 HELIX 33 AD6 GLU D 108 GLY D 118 1 11 HELIX 34 AD7 PRO D 119 LYS D 132 1 14 HELIX 35 AD8 THR D 155 LEU D 163 1 9 HELIX 36 AD9 ILE D 169 ARG D 173 5 5 SHEET 1 AA1 2 LEU A 2 THR A 3 0 SHEET 2 AA1 2 MET A 46 LEU A 47 -1 O LEU A 47 N LEU A 2 SHEET 1 AA2 3 GLN A 25 LYS A 28 0 SHEET 2 AA2 3 LEU A 18 TYR A 22 -1 N TYR A 22 O GLN A 25 SHEET 3 AA2 3 ILE A 69 ILE A 71 -1 O ARG A 70 N ALA A 19 SHEET 1 AA3 5 ILE A 34 VAL A 37 0 SHEET 2 AA3 5 VAL A 50 ILE A 55 -1 O LEU A 53 N VAL A 35 SHEET 3 AA3 5 THR A 96 ALA A 104 1 O ASP A 100 N VAL A 50 SHEET 4 AA3 5 LYS A 85 GLU A 91 -1 N LEU A 88 O LEU A 99 SHEET 5 AA3 5 PHE A 76 VAL A 78 -1 N SER A 77 O PHE A 89 SHEET 1 AA4 2 LYS A 136 LEU A 137 0 SHEET 2 AA4 2 LEU A 142 PHE A 143 -1 O PHE A 143 N LYS A 136 SHEET 1 AA5 2 LEU B 2 THR B 3 0 SHEET 2 AA5 2 MET B 46 LEU B 47 -1 O LEU B 47 N LEU B 2 SHEET 1 AA6 3 GLN B 25 LYS B 28 0 SHEET 2 AA6 3 LEU B 18 TYR B 22 -1 N TYR B 22 O GLN B 25 SHEET 3 AA6 3 ILE B 69 ILE B 71 -1 O ARG B 70 N ALA B 19 SHEET 1 AA7 5 ILE B 34 VAL B 37 0 SHEET 2 AA7 5 VAL B 50 VAL B 56 -1 O LEU B 53 N VAL B 35 SHEET 3 AA7 5 THR B 96 LEU B 105 1 O PHE B 102 N ILE B 54 SHEET 4 AA7 5 LYS B 85 GLU B 91 -1 N LEU B 88 O LEU B 99 SHEET 5 AA7 5 PHE B 76 CYS B 81 -1 N SER B 77 O PHE B 89 SHEET 1 AA8 3 LYS B 136 LEU B 137 0 SHEET 2 AA8 3 LEU B 142 LYS B 144 -1 O PHE B 143 N LYS B 136 SHEET 3 AA8 3 THR B 147 LEU B 148 -1 O THR B 147 N LYS B 144 SHEET 1 AA9 2 LEU C 2 THR C 3 0 SHEET 2 AA9 2 MET C 46 LEU C 47 -1 O LEU C 47 N LEU C 2 SHEET 1 AB1 3 GLN C 25 LYS C 28 0 SHEET 2 AB1 3 LEU C 18 TYR C 22 -1 N TYR C 22 O GLN C 25 SHEET 3 AB1 3 ILE C 69 ILE C 71 -1 O ARG C 70 N ALA C 19 SHEET 1 AB2 5 ILE C 34 VAL C 37 0 SHEET 2 AB2 5 VAL C 50 VAL C 56 -1 O LEU C 53 N VAL C 35 SHEET 3 AB2 5 THR C 96 LEU C 105 1 O ASP C 100 N VAL C 50 SHEET 4 AB2 5 LYS C 85 GLU C 91 -1 N LEU C 88 O LEU C 99 SHEET 5 AB2 5 PHE C 76 VAL C 78 -1 N SER C 77 O PHE C 89 SHEET 1 AB3 3 LYS C 136 LEU C 137 0 SHEET 2 AB3 3 LEU C 142 LYS C 144 -1 O PHE C 143 N LYS C 136 SHEET 3 AB3 3 THR C 147 VAL C 149 -1 O VAL C 149 N LEU C 142 SHEET 1 AB4 2 LEU D 2 THR D 3 0 SHEET 2 AB4 2 MET D 46 LEU D 47 -1 O LEU D 47 N LEU D 2 SHEET 1 AB5 3 GLN D 25 LYS D 28 0 SHEET 2 AB5 3 LEU D 18 TYR D 22 -1 N TYR D 22 O GLN D 25 SHEET 3 AB5 3 ILE D 69 ILE D 71 -1 O ARG D 70 N ALA D 19 SHEET 1 AB6 5 ILE D 34 VAL D 37 0 SHEET 2 AB6 5 ASP D 49 VAL D 56 -1 O LEU D 53 N VAL D 35 SHEET 3 AB6 5 THR D 96 LEU D 105 1 O PHE D 102 N ILE D 54 SHEET 4 AB6 5 LYS D 85 GLU D 91 -1 N LEU D 88 O LEU D 99 SHEET 5 AB6 5 PHE D 76 CYS D 81 -1 N SER D 77 O PHE D 89 SHEET 1 AB7 3 LYS D 136 LEU D 137 0 SHEET 2 AB7 3 LEU D 142 LYS D 144 -1 O PHE D 143 N LYS D 136 SHEET 3 AB7 3 THR D 147 LEU D 148 -1 O THR D 147 N LYS D 144 LINK O6 DG E 16 PB PB E 101 1555 1555 2.92 LINK PB PB E 101 O HOH F 101 1555 1555 2.50 CISPEP 1 GLY A 118 PRO A 119 0 -3.21 CISPEP 2 GLY B 118 PRO B 119 0 -2.32 CISPEP 3 GLY C 118 PRO C 119 0 -3.05 CISPEP 4 GLY D 118 PRO D 119 0 -2.74 SITE 1 AC1 5 TYR B 22 ASN B 23 LYS B 60 LYS B 63 SITE 2 AC1 5 HIS B 64 SITE 1 AC2 3 ARG B 125 THR B 166 ARG B 168 SITE 1 AC3 3 TYR B 135 GLU B 162 LEU B 163 SITE 1 AC4 2 DG E 16 HOH F 101 SITE 1 AC5 3 ARG D 125 THR D 166 ARG D 168 CRYST1 98.727 118.848 235.979 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010129 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004238 0.00000