HEADER TRANSFERASE/DNA 13-MAY-17 5XM9 TITLE CRYSTAL STRUCTURE OF ASFVPOLX IN COMPLEX WITH DNA ENZYME. COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPAIR DNA POLYMERASE X; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: POL X; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (36-MER); COMPND 10 CHAIN: E, G; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (23-MER); COMPND 14 CHAIN: F, H; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AFRICAN SWINE FEVER VIRUS (STRAIN BADAJOZ 1971 SOURCE 3 VERO-ADAPTED); SOURCE 4 ORGANISM_COMMON: BA71V; SOURCE 5 ORGANISM_TAXID: 10498; SOURCE 6 STRAIN: BADAJOZ 1971 VERO-ADAPTED; SOURCE 7 GENE: BA71V-97, O174L; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS POLX, DNA ENZYME, COMPLEX, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.H.LIU,J.H.GAN REVDAT 2 22-NOV-23 5XM9 1 REMARK REVDAT 1 24-JAN-18 5XM9 0 JRNL AUTH H.LIU,X.YU,Y.CHEN,J.ZHANG,B.WU,L.ZHENG,P.HARUEHANROENGRA, JRNL AUTH 2 R.WANG,S.LI,J.LIN,J.LI,J.SHENG,Z.HUANG,J.MA,J.GAN JRNL TITL CRYSTAL STRUCTURE OF AN RNA-CLEAVING DNAZYME. JRNL REF NAT COMMUN V. 8 2006 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29222499 JRNL DOI 10.1038/S41467-017-02203-X REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.460 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 26143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7209 - 6.3327 1.00 2968 158 0.1604 0.1892 REMARK 3 2 6.3327 - 5.0344 1.00 2854 153 0.1914 0.2827 REMARK 3 3 5.0344 - 4.4003 1.00 2835 151 0.1876 0.2426 REMARK 3 4 4.4003 - 3.9990 0.99 2770 159 0.1884 0.2283 REMARK 3 5 3.9990 - 3.7130 0.99 2777 135 0.2278 0.2874 REMARK 3 6 3.7130 - 3.4944 0.98 2757 154 0.2335 0.3111 REMARK 3 7 3.4944 - 3.3197 0.95 2659 159 0.2348 0.2963 REMARK 3 8 3.3197 - 3.1753 0.94 2649 133 0.2709 0.2870 REMARK 3 9 3.1753 - 3.0532 0.91 2547 125 0.3112 0.3549 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 8544 REMARK 3 ANGLE : 1.247 12006 REMARK 3 CHIRALITY : 0.083 1380 REMARK 3 PLANARITY : 0.005 1066 REMARK 3 DIHEDRAL : 23.770 3464 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300003770. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26143 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5HRB REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M DI-AMMONIUM HYDROGEN PHOSPHATE REMARK 280 AND 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.97750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 117.97750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.47000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.43900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.47000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.43900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.97750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.47000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.43900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.97750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.47000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.43900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLY C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 GLY D -2 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG D 41 OG1 THR D 117 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC E 28 O3' DC E 28 C3' -0.042 REMARK 500 DT E 29 O3' DT E 29 C3' -0.064 REMARK 500 DA F 10 O3' DA F 10 C3' 0.087 REMARK 500 DG H 16 O3' DC H 17 P -0.077 REMARK 500 DC H 17 O3' DC H 17 C3' -0.037 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT E 1 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG E 2 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DT E 3 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA E 4 O4' - C1' - N9 ANGL. DEV. = -6.8 DEGREES REMARK 500 DA E 5 P - O5' - C5' ANGL. DEV. = -10.9 DEGREES REMARK 500 DA E 5 O4' - C1' - N9 ANGL. DEV. = -4.5 DEGREES REMARK 500 DC E 8 C6 - N1 - C2 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC E 10 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC E 13 C3' - C2' - C1' ANGL. DEV. = -7.3 DEGREES REMARK 500 DC E 13 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DA E 15 O4' - C1' - N9 ANGL. DEV. = -5.6 DEGREES REMARK 500 DG E 16 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DG E 18 O4' - C1' - N9 ANGL. DEV. = -4.7 DEGREES REMARK 500 DG E 19 P - O5' - C5' ANGL. DEV. = -10.6 DEGREES REMARK 500 DG E 19 O4' - C1' - N9 ANGL. DEV. = -5.3 DEGREES REMARK 500 DC E 22 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG E 23 O4' - C1' - N9 ANGL. DEV. = 9.0 DEGREES REMARK 500 DT E 27 O4' - C4' - C3' ANGL. DEV. = -3.3 DEGREES REMARK 500 DT E 27 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC E 28 O4' - C4' - C3' ANGL. DEV. = -6.2 DEGREES REMARK 500 DT E 31 N3 - C4 - O4 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC E 32 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT E 33 O4' - C1' - N1 ANGL. DEV. = 6.1 DEGREES REMARK 500 DC E 34 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG E 35 P - O5' - C5' ANGL. DEV. = -11.4 DEGREES REMARK 500 DG E 35 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DT E 36 N3 - C4 - O4 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC F 2 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC F 2 C6 - N1 - C2 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG F 3 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG F 5 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DA F 6 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DG F 7 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 DA F 10 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT F 11 C4' - C3' - C2' ANGL. DEV. = -4.3 DEGREES REMARK 500 DT F 11 O4' - C1' - N1 ANGL. DEV. = 8.6 DEGREES REMARK 500 DG F 12 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG F 14 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT F 15 O4' - C1' - C2' ANGL. DEV. = 3.3 DEGREES REMARK 500 DT F 15 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT F 19 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT F 20 N3 - C4 - O4 ANGL. DEV. = 4.5 DEGREES REMARK 500 DA F 21 O4' - C1' - C2' ANGL. DEV. = -7.4 DEGREES REMARK 500 DA F 21 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DC F 22 C4' - C3' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DA F 23 O4' - C4' - C3' ANGL. DEV. = -4.3 DEGREES REMARK 500 DA G 4 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC G 6 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DC G 8 O4' - C4' - C3' ANGL. DEV. = -3.8 DEGREES REMARK 500 DC G 8 C1' - O4' - C4' ANGL. DEV. = -7.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 87 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 59 -33.23 -39.37 REMARK 500 LYS A 72 106.26 -55.56 REMARK 500 ALA A 106 -48.45 -24.70 REMARK 500 GLN A 146 15.01 51.57 REMARK 500 ARG B 42 32.30 -86.45 REMARK 500 GLU B 43 56.01 23.73 REMARK 500 ASN B 48 -50.46 -140.82 REMARK 500 ASN B 68 53.24 -104.85 REMARK 500 GLN B 146 -48.55 -134.73 REMARK 500 LEU B 163 11.37 -69.86 REMARK 500 VAL C 65 -70.08 -58.25 REMARK 500 ASN C 68 63.68 -108.77 REMARK 500 CYS C 81 125.12 -176.20 REMARK 500 GLN C 146 1.48 58.01 REMARK 500 LYS C 152 70.91 -66.75 REMARK 500 THR C 154 -15.58 -147.95 REMARK 500 VAL D 65 -75.28 -67.85 REMARK 500 GLN D 146 -1.09 66.35 REMARK 500 REMARK 500 REMARK: NULL DBREF 5XM9 A 1 174 UNP P42494 DPOLX_ASFB7 1 174 DBREF 5XM9 B 1 174 UNP P42494 DPOLX_ASFB7 1 174 DBREF 5XM9 E 1 36 PDB 5XM9 5XM9 1 36 DBREF 5XM9 F 1 23 PDB 5XM9 5XM9 1 23 DBREF 5XM9 C 1 174 UNP P42494 DPOLX_ASFB7 1 174 DBREF 5XM9 D 1 174 UNP P42494 DPOLX_ASFB7 1 174 DBREF 5XM9 G 1 36 PDB 5XM9 5XM9 1 36 DBREF 5XM9 H 1 23 PDB 5XM9 5XM9 1 23 SEQADV 5XM9 GLY A -2 UNP P42494 EXPRESSION TAG SEQADV 5XM9 GLY A -1 UNP P42494 EXPRESSION TAG SEQADV 5XM9 SER A 0 UNP P42494 EXPRESSION TAG SEQADV 5XM9 ASN A 51 UNP P42494 ASP 51 ENGINEERED MUTATION SEQADV 5XM9 GLY B -2 UNP P42494 EXPRESSION TAG SEQADV 5XM9 GLY B -1 UNP P42494 EXPRESSION TAG SEQADV 5XM9 SER B 0 UNP P42494 EXPRESSION TAG SEQADV 5XM9 ASN B 51 UNP P42494 ASP 51 ENGINEERED MUTATION SEQADV 5XM9 GLY C -2 UNP P42494 EXPRESSION TAG SEQADV 5XM9 GLY C -1 UNP P42494 EXPRESSION TAG SEQADV 5XM9 SER C 0 UNP P42494 EXPRESSION TAG SEQADV 5XM9 ASN C 51 UNP P42494 ASP 51 ENGINEERED MUTATION SEQADV 5XM9 GLY D -2 UNP P42494 EXPRESSION TAG SEQADV 5XM9 GLY D -1 UNP P42494 EXPRESSION TAG SEQADV 5XM9 SER D 0 UNP P42494 EXPRESSION TAG SEQADV 5XM9 ASN D 51 UNP P42494 ASP 51 ENGINEERED MUTATION SEQRES 1 A 177 GLY GLY SER MET LEU THR LEU ILE GLN GLY LYS LYS ILE SEQRES 2 A 177 VAL ASN HIS LEU ARG SER ARG LEU ALA PHE GLU TYR ASN SEQRES 3 A 177 GLY GLN LEU ILE LYS ILE LEU SER LYS ASN ILE VAL ALA SEQRES 4 A 177 VAL GLY SER LEU ARG ARG GLU GLU LYS MET LEU ASN ASP SEQRES 5 A 177 VAL ASN LEU LEU ILE ILE VAL PRO GLU LYS LYS LEU LEU SEQRES 6 A 177 LYS HIS VAL LEU PRO ASN ILE ARG ILE LYS GLY LEU SER SEQRES 7 A 177 PHE SER VAL LYS VAL CYS GLY GLU ARG LYS CYS VAL LEU SEQRES 8 A 177 PHE ILE GLU TRP GLU LYS LYS THR TYR GLN LEU ASP LEU SEQRES 9 A 177 PHE THR ALA LEU ALA GLU GLU LYS PRO TYR ALA ILE PHE SEQRES 10 A 177 HIS PHE THR GLY PRO VAL SER TYR LEU ILE ARG ILE ARG SEQRES 11 A 177 ALA ALA LEU LYS LYS LYS ASN TYR LYS LEU ASN GLN TYR SEQRES 12 A 177 GLY LEU PHE LYS ASN GLN THR LEU VAL PRO LEU LYS ILE SEQRES 13 A 177 THR THR GLU LYS GLU LEU ILE LYS GLU LEU GLY PHE THR SEQRES 14 A 177 TYR ARG ILE PRO LYS LYS ARG LEU SEQRES 1 B 177 GLY GLY SER MET LEU THR LEU ILE GLN GLY LYS LYS ILE SEQRES 2 B 177 VAL ASN HIS LEU ARG SER ARG LEU ALA PHE GLU TYR ASN SEQRES 3 B 177 GLY GLN LEU ILE LYS ILE LEU SER LYS ASN ILE VAL ALA SEQRES 4 B 177 VAL GLY SER LEU ARG ARG GLU GLU LYS MET LEU ASN ASP SEQRES 5 B 177 VAL ASN LEU LEU ILE ILE VAL PRO GLU LYS LYS LEU LEU SEQRES 6 B 177 LYS HIS VAL LEU PRO ASN ILE ARG ILE LYS GLY LEU SER SEQRES 7 B 177 PHE SER VAL LYS VAL CYS GLY GLU ARG LYS CYS VAL LEU SEQRES 8 B 177 PHE ILE GLU TRP GLU LYS LYS THR TYR GLN LEU ASP LEU SEQRES 9 B 177 PHE THR ALA LEU ALA GLU GLU LYS PRO TYR ALA ILE PHE SEQRES 10 B 177 HIS PHE THR GLY PRO VAL SER TYR LEU ILE ARG ILE ARG SEQRES 11 B 177 ALA ALA LEU LYS LYS LYS ASN TYR LYS LEU ASN GLN TYR SEQRES 12 B 177 GLY LEU PHE LYS ASN GLN THR LEU VAL PRO LEU LYS ILE SEQRES 13 B 177 THR THR GLU LYS GLU LEU ILE LYS GLU LEU GLY PHE THR SEQRES 14 B 177 TYR ARG ILE PRO LYS LYS ARG LEU SEQRES 1 E 36 DT DG DT DA DA DC DG DC DA DC DT DG DC SEQRES 2 E 36 DC DA DG DC DG DG DC DT DC DG DA DA DA SEQRES 3 E 36 DT DC DT DC DT DC DT DC DG DT SEQRES 1 F 23 DA DC DG DA DG DA DG DA DG DA DT DG DG SEQRES 2 F 23 DG DT DG DC DG DT DT DA DC DA SEQRES 1 C 177 GLY GLY SER MET LEU THR LEU ILE GLN GLY LYS LYS ILE SEQRES 2 C 177 VAL ASN HIS LEU ARG SER ARG LEU ALA PHE GLU TYR ASN SEQRES 3 C 177 GLY GLN LEU ILE LYS ILE LEU SER LYS ASN ILE VAL ALA SEQRES 4 C 177 VAL GLY SER LEU ARG ARG GLU GLU LYS MET LEU ASN ASP SEQRES 5 C 177 VAL ASN LEU LEU ILE ILE VAL PRO GLU LYS LYS LEU LEU SEQRES 6 C 177 LYS HIS VAL LEU PRO ASN ILE ARG ILE LYS GLY LEU SER SEQRES 7 C 177 PHE SER VAL LYS VAL CYS GLY GLU ARG LYS CYS VAL LEU SEQRES 8 C 177 PHE ILE GLU TRP GLU LYS LYS THR TYR GLN LEU ASP LEU SEQRES 9 C 177 PHE THR ALA LEU ALA GLU GLU LYS PRO TYR ALA ILE PHE SEQRES 10 C 177 HIS PHE THR GLY PRO VAL SER TYR LEU ILE ARG ILE ARG SEQRES 11 C 177 ALA ALA LEU LYS LYS LYS ASN TYR LYS LEU ASN GLN TYR SEQRES 12 C 177 GLY LEU PHE LYS ASN GLN THR LEU VAL PRO LEU LYS ILE SEQRES 13 C 177 THR THR GLU LYS GLU LEU ILE LYS GLU LEU GLY PHE THR SEQRES 14 C 177 TYR ARG ILE PRO LYS LYS ARG LEU SEQRES 1 D 177 GLY GLY SER MET LEU THR LEU ILE GLN GLY LYS LYS ILE SEQRES 2 D 177 VAL ASN HIS LEU ARG SER ARG LEU ALA PHE GLU TYR ASN SEQRES 3 D 177 GLY GLN LEU ILE LYS ILE LEU SER LYS ASN ILE VAL ALA SEQRES 4 D 177 VAL GLY SER LEU ARG ARG GLU GLU LYS MET LEU ASN ASP SEQRES 5 D 177 VAL ASN LEU LEU ILE ILE VAL PRO GLU LYS LYS LEU LEU SEQRES 6 D 177 LYS HIS VAL LEU PRO ASN ILE ARG ILE LYS GLY LEU SER SEQRES 7 D 177 PHE SER VAL LYS VAL CYS GLY GLU ARG LYS CYS VAL LEU SEQRES 8 D 177 PHE ILE GLU TRP GLU LYS LYS THR TYR GLN LEU ASP LEU SEQRES 9 D 177 PHE THR ALA LEU ALA GLU GLU LYS PRO TYR ALA ILE PHE SEQRES 10 D 177 HIS PHE THR GLY PRO VAL SER TYR LEU ILE ARG ILE ARG SEQRES 11 D 177 ALA ALA LEU LYS LYS LYS ASN TYR LYS LEU ASN GLN TYR SEQRES 12 D 177 GLY LEU PHE LYS ASN GLN THR LEU VAL PRO LEU LYS ILE SEQRES 13 D 177 THR THR GLU LYS GLU LEU ILE LYS GLU LEU GLY PHE THR SEQRES 14 D 177 TYR ARG ILE PRO LYS LYS ARG LEU SEQRES 1 G 36 DT DG DT DA DA DC DG DC DA DC DT DG DC SEQRES 2 G 36 DC DA DG DC DG DG DC DT DC DG DA DA DA SEQRES 3 G 36 DT DC DT DC DT DC DT DC DG DT SEQRES 1 H 23 DA DC DG DA DG DA DG DA DG DA DT DG DG SEQRES 2 H 23 DG DT DG DC DG DT DT DA DC DA HELIX 1 AA1 LEU A 4 SER A 16 1 13 HELIX 2 AA2 LEU A 30 LYS A 32 5 3 HELIX 3 AA3 VAL A 37 ARG A 42 1 6 HELIX 4 AA4 GLU A 58 HIS A 64 5 7 HELIX 5 AA5 GLU A 108 GLY A 118 1 11 HELIX 6 AA6 PRO A 119 LYS A 132 1 14 HELIX 7 AA7 THR A 155 LEU A 163 1 9 HELIX 8 AA8 ILE A 169 ARG A 173 5 5 HELIX 9 AA9 LEU B 4 SER B 16 1 13 HELIX 10 AB1 LEU B 30 LYS B 32 5 3 HELIX 11 AB2 VAL B 37 ARG B 42 1 6 HELIX 12 AB3 GLU B 58 LYS B 60 5 3 HELIX 13 AB4 LEU B 61 LEU B 66 1 6 HELIX 14 AB5 GLU B 108 GLY B 118 1 11 HELIX 15 AB6 PRO B 119 LYS B 132 1 14 HELIX 16 AB7 THR B 155 LEU B 163 1 9 HELIX 17 AB8 ILE B 169 ARG B 173 5 5 HELIX 18 AB9 LEU C 4 SER C 16 1 13 HELIX 19 AC1 LEU C 30 LYS C 32 5 3 HELIX 20 AC2 GLY C 38 ARG C 41 5 4 HELIX 21 AC3 GLU C 58 LYS C 60 5 3 HELIX 22 AC4 LEU C 61 LEU C 66 1 6 HELIX 23 AC5 GLU C 108 GLY C 118 1 11 HELIX 24 AC6 PRO C 119 LYS C 133 1 15 HELIX 25 AC7 THR C 155 LEU C 163 1 9 HELIX 26 AC8 ILE C 169 ARG C 173 5 5 HELIX 27 AC9 LEU D 4 ARG D 15 1 12 HELIX 28 AD1 LEU D 30 LYS D 32 5 3 HELIX 29 AD2 GLY D 38 ARG D 41 5 4 HELIX 30 AD3 GLU D 58 HIS D 64 5 7 HELIX 31 AD4 VAL D 65 PRO D 67 5 3 HELIX 32 AD5 GLU D 108 GLY D 118 1 11 HELIX 33 AD6 PRO D 119 LYS D 132 1 14 HELIX 34 AD7 THR D 155 LEU D 163 1 9 HELIX 35 AD8 ILE D 169 ARG D 173 5 5 SHEET 1 AA1 2 LEU A 2 THR A 3 0 SHEET 2 AA1 2 MET A 46 LEU A 47 -1 O LEU A 47 N LEU A 2 SHEET 1 AA2 3 LEU A 26 LYS A 28 0 SHEET 2 AA2 3 LEU A 18 GLU A 21 -1 N PHE A 20 O ILE A 27 SHEET 3 AA2 3 ILE A 69 ILE A 71 -1 O ARG A 70 N ALA A 19 SHEET 1 AA3 5 ILE A 34 ALA A 36 0 SHEET 2 AA3 5 VAL A 50 VAL A 56 -1 O LEU A 53 N VAL A 35 SHEET 3 AA3 5 THR A 96 LEU A 105 1 O ASP A 100 N VAL A 50 SHEET 4 AA3 5 LYS A 85 GLU A 91 -1 N LEU A 88 O LEU A 99 SHEET 5 AA3 5 PHE A 76 CYS A 81 -1 N VAL A 80 O VAL A 87 SHEET 1 AA4 3 LYS A 136 ASN A 138 0 SHEET 2 AA4 3 GLY A 141 LYS A 144 -1 O PHE A 143 N LYS A 136 SHEET 3 AA4 3 THR A 147 LEU A 148 -1 O THR A 147 N LYS A 144 SHEET 1 AA5 2 LEU B 2 THR B 3 0 SHEET 2 AA5 2 MET B 46 LEU B 47 -1 O LEU B 47 N LEU B 2 SHEET 1 AA6 3 GLN B 25 LYS B 28 0 SHEET 2 AA6 3 LEU B 18 TYR B 22 -1 N TYR B 22 O GLN B 25 SHEET 3 AA6 3 ILE B 69 ILE B 71 -1 O ARG B 70 N ALA B 19 SHEET 1 AA7 5 ILE B 34 ALA B 36 0 SHEET 2 AA7 5 ASP B 49 VAL B 56 -1 O LEU B 53 N VAL B 35 SHEET 3 AA7 5 THR B 96 LEU B 105 1 O PHE B 102 N ILE B 54 SHEET 4 AA7 5 LYS B 85 GLU B 91 -1 N LEU B 88 O LEU B 99 SHEET 5 AA7 5 PHE B 76 CYS B 81 -1 N LYS B 79 O VAL B 87 SHEET 1 AA8 3 LYS B 136 LEU B 137 0 SHEET 2 AA8 3 LEU B 142 PHE B 143 -1 O PHE B 143 N LYS B 136 SHEET 3 AA8 3 LEU B 148 VAL B 149 -1 O VAL B 149 N LEU B 142 SHEET 1 AA9 2 LEU C 2 THR C 3 0 SHEET 2 AA9 2 MET C 46 LEU C 47 -1 O LEU C 47 N LEU C 2 SHEET 1 AB1 3 GLN C 25 LYS C 28 0 SHEET 2 AB1 3 LEU C 18 TYR C 22 -1 N PHE C 20 O ILE C 27 SHEET 3 AB1 3 ILE C 69 ILE C 71 -1 O ARG C 70 N ALA C 19 SHEET 1 AB2 5 ILE C 34 VAL C 37 0 SHEET 2 AB2 5 ASP C 49 VAL C 56 -1 O LEU C 53 N VAL C 35 SHEET 3 AB2 5 THR C 96 LEU C 105 1 O ALA C 104 N VAL C 56 SHEET 4 AB2 5 LYS C 85 GLU C 91 -1 N LEU C 88 O LEU C 99 SHEET 5 AB2 5 PHE C 76 CYS C 81 -1 N LYS C 79 O VAL C 87 SHEET 1 AB3 3 LYS C 136 LEU C 137 0 SHEET 2 AB3 3 LEU C 142 LYS C 144 -1 O PHE C 143 N LYS C 136 SHEET 3 AB3 3 THR C 147 VAL C 149 -1 O VAL C 149 N LEU C 142 SHEET 1 AB4 2 LEU D 2 THR D 3 0 SHEET 2 AB4 2 MET D 46 LEU D 47 -1 O LEU D 47 N LEU D 2 SHEET 1 AB5 3 GLN D 25 LYS D 28 0 SHEET 2 AB5 3 LEU D 18 TYR D 22 -1 N TYR D 22 O GLN D 25 SHEET 3 AB5 3 ILE D 69 ILE D 71 -1 O ARG D 70 N ALA D 19 SHEET 1 AB6 5 ILE D 34 VAL D 37 0 SHEET 2 AB6 5 ASP D 49 VAL D 56 -1 O LEU D 53 N VAL D 35 SHEET 3 AB6 5 THR D 96 LEU D 105 1 O ALA D 104 N VAL D 56 SHEET 4 AB6 5 LYS D 85 GLU D 91 -1 N CYS D 86 O LEU D 101 SHEET 5 AB6 5 PHE D 76 CYS D 81 -1 N SER D 77 O PHE D 89 SHEET 1 AB7 3 LYS D 136 ASN D 138 0 SHEET 2 AB7 3 GLY D 141 LYS D 144 -1 O PHE D 143 N LYS D 136 SHEET 3 AB7 3 THR D 147 VAL D 149 -1 O VAL D 149 N LEU D 142 CISPEP 1 GLY A 118 PRO A 119 0 -7.13 CISPEP 2 GLY B 118 PRO B 119 0 0.01 CISPEP 3 GLY C 118 PRO C 119 0 -6.64 CISPEP 4 GLY D 118 PRO D 119 0 -3.62 CRYST1 98.940 118.878 235.955 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010107 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004238 0.00000