HEADER LIGASE 27-MAY-17 5XOB TITLE CRYSTAL STRUCTURE OF APO TIAS (TRNAILE2 AGMATIDINE SYNTHETASE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA(ILE2) 2-AGMATINYLCYTIDINE SYNTHETASE TIAS; COMPND 3 CHAIN: Z; COMPND 4 SYNONYM: TRNA(ILE2)-AGM2C SYNTHETASE,TRNA(ILE2) AGMATIDINE COMPND 5 SYNTHETASE; COMPND 6 EC: 6.3.4.22; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS (STRAIN ATCC 49558 / VC- SOURCE 3 16 / DSM 4304 / JCM 9628 / NBRC 100126); SOURCE 4 ORGANISM_TAXID: 224325; SOURCE 5 STRAIN: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126; SOURCE 6 GENE: TIAS, AF_2259; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZINC RIBBON, CONFORMATIONAL CHANGE, TIAS, TRNA MODIFICATION, ZINC KEYWDS 2 FINGER ENGINEERING, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.DONG REVDAT 2 24-OCT-18 5XOB 1 JRNL REVDAT 1 29-AUG-18 5XOB 0 JRNL AUTH J.DONG,F.LI,F.GAO,J.WEI,Y.LIN,Y.ZHANG,J.LOU,G.LIU,Y.DONG, JRNL AUTH 2 L.LIU,H.LIU,J.WANG,W.GONG JRNL TITL STRUCTURE OF TRNA-MODIFYING ENZYME TIAS AND MOTIONS OF ITS JRNL TITL 2 SUBSTRATE BINDING ZINC RIBBON. JRNL REF J. MOL. BIOL. V. 430 4183 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 30121296 JRNL DOI 10.1016/J.JMB.2018.08.015 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 18414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 962 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1310 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 12 REMARK 3 BIN FREE R VALUE : 0.4140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3282 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.85000 REMARK 3 B22 (A**2) : 3.85000 REMARK 3 B33 (A**2) : -7.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.483 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.311 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.274 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.395 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3348 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3226 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4533 ; 1.224 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7424 ; 0.741 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 415 ; 6.897 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;35.554 ;23.782 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 577 ;19.519 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;19.920 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 505 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3765 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 743 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1666 ; 3.090 ; 8.075 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1665 ; 3.089 ; 8.074 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2079 ; 5.237 ;12.100 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2080 ; 5.236 ;12.102 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1682 ; 3.258 ; 8.572 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1682 ; 3.258 ; 8.572 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2454 ; 5.714 ;12.649 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3590 ; 8.479 ;62.923 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3591 ; 8.478 ;62.934 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XOB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300003633. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18539 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM HEPES-NA PH7.0-7.2, 0.5M NH4AC, REMARK 280 0.2M MGCL2, 1.5-2.5% PEG 8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.55100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.46300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.46300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.77550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.46300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.46300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 158.32650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.46300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.46300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.77550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.46300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.46300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 158.32650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 105.55100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR Z 51 REMARK 465 LYS Z 52 REMARK 465 THR Z 53 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG Z 14 CG CD NE CZ NH1 NH2 REMARK 470 LYS Z 35 CG CD CE NZ REMARK 470 ARG Z 54 CG CD NE CZ NH1 NH2 REMARK 470 ASP Z 98 CG OD1 OD2 REMARK 470 ARG Z 140 CG CD NE CZ NH1 NH2 REMARK 470 GLU Z 174 CG CD OE1 OE2 REMARK 470 TYR Z 185 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU Z 229 CG CD OE1 OE2 REMARK 470 ARG Z 260 CG CD NE CZ NH1 NH2 REMARK 470 ARG Z 270 CG CD NE CZ NH1 NH2 REMARK 470 ARG Z 315 CG CD NE CZ NH1 NH2 REMARK 470 ARG Z 369 CG CD NE CZ NH1 NH2 REMARK 470 LYS Z 371 CG CD CE NZ REMARK 470 ARG Z 374 CG CD NE CZ NH1 NH2 REMARK 470 ARG Z 387 CG CD NE CZ NH1 NH2 REMARK 470 GLU Z 414 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL Z 396 NH2 ARG Z 401 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP Z 9 52.07 71.42 REMARK 500 SER Z 13 45.26 -66.99 REMARK 500 ARG Z 14 82.53 172.70 REMARK 500 TPO Z 18 -74.67 17.86 REMARK 500 ASN Z 56 79.49 -109.82 REMARK 500 LYS Z 89 59.03 -103.99 REMARK 500 LYS Z 137 -116.94 -136.33 REMARK 500 GLU Z 167 -36.10 -34.23 REMARK 500 PRO Z 209 27.07 -69.79 REMARK 500 ASP Z 237 -89.88 -85.32 REMARK 500 THR Z 274 -80.23 -107.42 REMARK 500 GLU Z 281 -50.23 1.15 REMARK 500 LYS Z 305 -117.95 56.67 REMARK 500 LEU Z 313 -73.67 -66.97 REMARK 500 LEU Z 314 149.86 -29.84 REMARK 500 LYS Z 316 137.89 -37.06 REMARK 500 VAL Z 339 -81.08 -86.16 REMARK 500 SER Z 354 -73.24 -79.33 REMARK 500 ASN Z 412 53.28 -98.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS Z 17 TPO Z 18 142.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG Z 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP Z 8 OD1 REMARK 620 2 TPO Z 18 O3P 71.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN Z 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS Z 352 SG REMARK 620 2 CYS Z 355 SG 113.4 REMARK 620 3 CYS Z 370 SG 95.2 121.0 REMARK 620 4 CYS Z 373 SG 105.5 120.3 97.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN Z 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG Z 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6AGG RELATED DB: PDB DBREF 5XOB Z 1 420 UNP O28025 TIAS_ARCFU 1 420 SEQRES 1 Z 420 MET ARG VAL TRP VAL GLY ILE ASP ASP THR ASP SER SER SEQRES 2 Z 420 ARG GLY MET CYS TPO THR TYR LEU ALA VAL LEU ALA MET SEQRES 3 Z 420 GLU ARG VAL GLU ARG GLU LEU GLY LYS VAL ILE GLY PHE SEQRES 4 Z 420 PRO ARG LEU ILE ARG LEU ASN PRO THR ILE PRO TYR LYS SEQRES 5 Z 420 THR ARG GLY ASN GLY ALA VAL SER PHE LEU VAL GLU VAL SEQRES 6 Z 420 ASP ASP VAL GLY GLU LEU VAL ASP VAL VAL ASN GLU VAL SEQRES 7 Z 420 ILE ILE GLU HIS ALA MET LEU ASP ASP GLU LYS THR ASN SEQRES 8 Z 420 PRO GLY ALA VAL PHE VAL ASP GLU GLU LEU ALA VAL LYS SEQRES 9 Z 420 LEU LYS PRO PHE ALA ASP LYS ALA ILE LYS ASP VAL LEU SEQRES 10 Z 420 GLN ILE ASP GLU ALA LEU PHE VAL ILE GLY LYS TYR PHE SEQRES 11 Z 420 ILE PRO HIS LEU ARG HIS LYS LYS GLY ARG GLY LEU ILE SEQRES 12 Z 420 GLY ALA LEU ALA ALA VAL GLY ALA GLU LEU GLU ASP PHE SEQRES 13 Z 420 THR LEU GLU LEU ILE ALA TYR ARG TYR PRO GLU ARG PHE SEQRES 14 Z 420 GLY THR GLU ARG GLU TYR ASP GLU GLU SER PHE PHE ASP SEQRES 15 Z 420 MET ASP TYR GLU LEU TYR PRO GLN THR PHE ASP ASN VAL SEQRES 16 Z 420 ASP TRP CYS ASN ASP VAL VAL VAL CYS ILE PRO ASN THR SEQRES 17 Z 420 PRO CYS PRO VAL LEU TYR GLY ILE ARG GLY GLU SER VAL SEQRES 18 Z 420 GLU ALA LEU TYR LYS ALA MET GLU SER VAL LYS THR GLU SEQRES 19 Z 420 PRO VAL ASP ARG ARG MET ILE PHE VAL THR ASN HIS ALA SEQRES 20 Z 420 THR ASP MET HIS LEU ILE GLY GLU GLU GLU VAL HIS ARG SEQRES 21 Z 420 LEU GLU ASN TYR ARG SER TYR ARG LEU ARG GLY ARG VAL SEQRES 22 Z 420 THR LEU GLU PRO TYR ASP ILE GLU GLY GLY HIS VAL PHE SEQRES 23 Z 420 PHE GLU ILE ASP THR LYS PHE GLY SER VAL LYS CYS ALA SEQRES 24 Z 420 ALA PHE GLU PRO THR LYS GLN PHE ARG ASN VAL ILE ARG SEQRES 25 Z 420 LEU LEU ARG LYS GLY ASP VAL VAL GLU VAL TYR GLY SER SEQRES 26 Z 420 MET LYS LYS ASP THR ILE ASN LEU GLU LYS ILE GLN ILE SEQRES 27 Z 420 VAL GLU LEU ALA GLU ILE TRP VAL GLU LYS ASN PRO ILE SEQRES 28 Z 420 CYS PRO SER CYS GLY ARG ARG MET GLU SER ALA GLY ARG SEQRES 29 Z 420 GLY GLN GLY PHE ARG CYS LYS LYS CYS ARG THR LYS ALA SEQRES 30 Z 420 ASP GLU LYS LEU ARG GLU LYS VAL GLU ARG GLU LEU GLN SEQRES 31 Z 420 PRO GLY PHE TYR GLU VAL PRO PRO SER ALA ARG ARG HIS SEQRES 32 Z 420 LEU SER LYS PRO LEU ILE ARG MET ASN VAL GLU GLY ARG SEQRES 33 Z 420 HIS ILE PHE ARG MODRES 5XOB TPO Z 18 THR MODIFIED RESIDUE HET TPO Z 18 11 HET ZN Z 501 1 HET MG Z 502 1 HETNAM TPO PHOSPHOTHREONINE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 ZN ZN 2+ FORMUL 3 MG MG 2+ HELIX 1 AA1 CYS Z 17 LEU Z 33 1 17 HELIX 2 AA2 ASP Z 67 ALA Z 83 1 17 HELIX 3 AA3 GLU Z 99 VAL Z 103 1 5 HELIX 4 AA4 LEU Z 105 ASP Z 115 1 11 HELIX 5 AA5 GLN Z 118 PHE Z 130 1 13 HELIX 6 AA6 ARG Z 140 ALA Z 151 1 12 HELIX 7 AA7 TYR Z 165 PHE Z 169 5 5 HELIX 8 AA8 ASP Z 176 TYR Z 188 1 13 HELIX 9 AA9 SER Z 220 VAL Z 231 1 12 HELIX 10 AB1 GLU Z 256 VAL Z 258 5 3 HELIX 11 AB2 PHE Z 301 LYS Z 305 5 5 HELIX 12 AB3 GLN Z 306 LEU Z 314 1 9 HELIX 13 AB4 PRO Z 397 ARG Z 401 5 5 HELIX 14 AB5 PRO Z 407 MET Z 411 5 5 SHEET 1 AA1 8 HIS Z 133 ARG Z 135 0 SHEET 2 AA1 8 GLY Z 93 ASP Z 98 -1 N ALA Z 94 O LEU Z 134 SHEET 3 AA1 8 ARG Z 2 ASP Z 8 -1 N TRP Z 4 O VAL Z 97 SHEET 4 AA1 8 GLY Z 57 GLU Z 64 -1 O PHE Z 61 N VAL Z 5 SHEET 5 AA1 8 LYS Z 35 ARG Z 44 -1 N ILE Z 37 O LEU Z 62 SHEET 6 AA1 8 ARG Z 239 THR Z 244 1 O VAL Z 243 N LEU Z 42 SHEET 7 AA1 8 THR Z 157 TYR Z 163 -1 N THR Z 157 O THR Z 244 SHEET 8 AA1 8 VAL Z 212 GLY Z 218 -1 O TYR Z 214 N ALA Z 162 SHEET 1 AA2 2 VAL Z 195 ASP Z 196 0 SHEET 2 AA2 2 VAL Z 201 VAL Z 202 -1 O VAL Z 201 N ASP Z 196 SHEET 1 AA3 4 LEU Z 252 GLY Z 254 0 SHEET 2 AA3 4 ARG Z 265 VAL Z 273 1 O SER Z 266 N ILE Z 253 SHEET 3 AA3 4 HIS Z 284 THR Z 291 -1 O ASP Z 290 N ARG Z 272 SHEET 4 AA3 4 TYR Z 278 ILE Z 280 -1 N TYR Z 278 O PHE Z 286 SHEET 1 AA4 6 LEU Z 252 GLY Z 254 0 SHEET 2 AA4 6 ARG Z 265 VAL Z 273 1 O SER Z 266 N ILE Z 253 SHEET 3 AA4 6 VAL Z 319 LYS Z 327 -1 O VAL Z 322 N LEU Z 269 SHEET 4 AA4 6 THR Z 330 ILE Z 338 -1 O ASN Z 332 N SER Z 325 SHEET 5 AA4 6 GLY Z 392 GLU Z 395 -1 O GLY Z 392 N ILE Z 338 SHEET 6 AA4 6 ARG Z 416 HIS Z 417 1 O HIS Z 417 N PHE Z 393 SHEET 1 AA5 6 TYR Z 278 ILE Z 280 0 SHEET 2 AA5 6 HIS Z 284 THR Z 291 -1 O PHE Z 286 N TYR Z 278 SHEET 3 AA5 6 GLY Z 294 ALA Z 300 -1 O GLY Z 294 N THR Z 291 SHEET 4 AA5 6 THR Z 330 ILE Z 338 1 O ILE Z 331 N LYS Z 297 SHEET 5 AA5 6 GLY Z 392 GLU Z 395 -1 O GLY Z 392 N ILE Z 338 SHEET 6 AA5 6 ARG Z 416 HIS Z 417 1 O HIS Z 417 N PHE Z 393 SHEET 1 AA6 2 TRP Z 345 LYS Z 348 0 SHEET 2 AA6 2 LEU Z 381 LYS Z 384 -1 O LEU Z 381 N LYS Z 348 SHEET 1 AA7 3 GLU Z 360 SER Z 361 0 SHEET 2 AA7 3 PHE Z 368 CYS Z 370 -1 O ARG Z 369 N GLU Z 360 SHEET 3 AA7 3 THR Z 375 ALA Z 377 -1 O ALA Z 377 N PHE Z 368 LINK OD1 ASP Z 8 MG MG Z 502 1555 1555 2.57 LINK C CYS Z 17 N TPO Z 18 1555 1555 1.32 LINK O3P TPO Z 18 MG MG Z 502 1555 1555 2.10 LINK C TPO Z 18 N THR Z 19 1555 1555 1.34 LINK SG CYS Z 352 ZN ZN Z 501 1555 1555 2.46 LINK SG CYS Z 355 ZN ZN Z 501 1555 1555 2.16 LINK SG CYS Z 370 ZN ZN Z 501 1555 1555 2.42 LINK SG CYS Z 373 ZN ZN Z 501 1555 1555 2.54 CISPEP 1 TYR Z 188 PRO Z 189 0 4.26 SITE 1 AC1 4 CYS Z 352 CYS Z 355 CYS Z 370 CYS Z 373 SITE 1 AC2 3 ASP Z 8 TPO Z 18 GLY Z 57 CRYST1 68.926 68.926 211.102 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014508 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014508 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004737 0.00000