HEADER SIGNALING PROTEIN 07-JUN-17 5XQM TITLE NMR SOLUTION STRUCTURE OF SMO1, SUMO HOMOLOGUE IN CAENORHABDITIS TITLE 2 ELEGANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL UBIQUITIN-RELATED MODIFIER; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SUMO,UBIQUITIN-LIKE PROTEIN SMT3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: SMO-1, SMT3, SUMO, K12C11.2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SOLUTION STRUCTURE, CAENORHABDITIS ELEGANS, SUMO HOMOLOGUE, SIGNALING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.M.GOWDA,P.SURANA,R.DAS REVDAT 2 01-MAY-24 5XQM 1 REMARK REVDAT 1 08-NOV-17 5XQM 0 JRNL AUTH P.SURANA,C.M.GOWDA,V.TRIPATHI,L.BRODAY,R.DAS JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF SMO-1, THE SUMO JRNL TITL 2 HOMOLOG IN CAENORHABDITIS ELEGANS JRNL REF PLOS ONE V. 12 86622 2017 JRNL REFN ESSN 1932-6203 JRNL PMID 29045470 JRNL DOI 10.1371/JOURNAL.PONE.0186622 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WATER REFINEMENT PERFORMED USING REMARK 3 PONDEROSA-C/S PACKAGE. REMARK 4 REMARK 4 5XQM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300003946. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 620 UM [U-13C; U-15N] SMO1, REMARK 210 SMALL UBIQUITIN LIKE MODIFIER IN REMARK 210 C. ELEGANS, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D CBCA(CO)NH; REMARK 210 3D HN(CO)CA; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, SPARKY, TOPSPIN, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ILE A 15 O VAL A 31 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 6 126.29 66.91 REMARK 500 1 ALA A 12 -74.41 -165.84 REMARK 500 1 ASP A 23 1.60 -69.85 REMARK 500 1 GLU A 74 34.27 38.08 REMARK 500 2 ASP A 23 22.19 -79.29 REMARK 500 2 ASP A 78 33.91 70.65 REMARK 500 2 GLU A 86 -155.79 -94.30 REMARK 500 4 ASP A 78 33.20 74.90 REMARK 500 5 ALA A 6 67.42 61.43 REMARK 500 5 GLN A 7 -161.86 59.35 REMARK 500 5 ALA A 12 -49.16 -153.11 REMARK 500 6 ASP A 23 4.17 -69.86 REMARK 500 7 ALA A 5 74.21 62.79 REMARK 500 7 GLN A 7 -176.39 58.47 REMARK 500 7 ASP A 78 33.54 71.27 REMARK 500 8 ASP A 3 -179.75 67.01 REMARK 500 8 ASN A 11 42.26 -171.34 REMARK 500 8 GLU A 13 35.67 70.40 REMARK 500 9 GLN A 7 125.14 68.20 REMARK 500 9 ASP A 78 34.32 73.27 REMARK 500 10 ALA A 5 -30.99 -170.76 REMARK 500 10 ASP A 78 34.68 71.24 REMARK 500 10 GLN A 87 -29.41 177.33 REMARK 500 10 LEU A 88 -37.60 178.44 REMARK 500 11 ALA A 5 -71.96 77.63 REMARK 500 11 ASP A 60 19.84 56.53 REMARK 500 11 GLU A 74 36.52 36.35 REMARK 500 11 ASP A 78 32.45 71.01 REMARK 500 12 GLN A 7 -159.20 54.34 REMARK 500 12 ALA A 12 -70.39 -79.68 REMARK 500 12 GLU A 13 -55.36 -174.20 REMARK 500 14 GLN A 7 -172.09 56.90 REMARK 500 14 ASP A 23 5.41 -69.33 REMARK 500 14 ASP A 66 -9.75 -58.38 REMARK 500 15 GLN A 7 102.91 57.46 REMARK 500 15 ALA A 12 178.69 67.17 REMARK 500 15 ASP A 60 18.70 58.71 REMARK 500 16 ALA A 5 -24.87 77.72 REMARK 500 16 ALA A 6 84.53 54.95 REMARK 500 16 GLN A 7 -171.12 61.49 REMARK 500 16 ALA A 12 -160.41 56.90 REMARK 500 16 ASP A 23 21.84 -79.63 REMARK 500 17 ALA A 5 -52.66 74.21 REMARK 500 17 ASP A 10 -54.80 66.74 REMARK 500 17 ASP A 78 34.28 74.19 REMARK 500 18 ASN A 11 20.98 -143.12 REMARK 500 18 GLU A 13 60.34 -115.37 REMARK 500 18 GLU A 74 65.62 76.26 REMARK 500 18 MET A 75 -179.31 -39.58 REMARK 500 18 ASP A 77 99.76 -35.34 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36096 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF SMO1, SUMO HOMOLOGUE IN CAENORHABDITIS REMARK 900 ELEGANS DBREF 5XQM A 1 90 UNP P55853 SUMO_CAEEL 1 90 SEQADV 5XQM MET A -6 UNP P55853 EXPRESSION TAG SEQADV 5XQM HIS A -5 UNP P55853 EXPRESSION TAG SEQADV 5XQM HIS A -4 UNP P55853 EXPRESSION TAG SEQADV 5XQM HIS A -3 UNP P55853 EXPRESSION TAG SEQADV 5XQM HIS A -2 UNP P55853 EXPRESSION TAG SEQADV 5XQM HIS A -1 UNP P55853 EXPRESSION TAG SEQADV 5XQM HIS A 0 UNP P55853 EXPRESSION TAG SEQRES 1 A 97 MET HIS HIS HIS HIS HIS HIS MET ALA ASP ASP ALA ALA SEQRES 2 A 97 GLN ALA GLY ASP ASN ALA GLU TYR ILE LYS ILE LYS VAL SEQRES 3 A 97 VAL GLY GLN ASP SER ASN GLU VAL HIS PHE ARG VAL LYS SEQRES 4 A 97 TYR GLY THR SER MET ALA LYS LEU LYS LYS SER TYR ALA SEQRES 5 A 97 ASP ARG THR GLY VAL ALA VAL ASN SER LEU ARG PHE LEU SEQRES 6 A 97 PHE ASP GLY ARG ARG ILE ASN ASP ASP ASP THR PRO LYS SEQRES 7 A 97 THR LEU GLU MET GLU ASP ASP ASP VAL ILE GLU VAL TYR SEQRES 8 A 97 GLN GLU GLN LEU GLY GLY HELIX 1 AA1 SER A 36 GLY A 49 1 14 HELIX 2 AA2 ALA A 51 LEU A 55 5 5 HELIX 3 AA3 THR A 69 GLU A 74 1 6 SHEET 1 AA1 5 GLU A 26 VAL A 31 0 SHEET 2 AA1 5 ILE A 15 VAL A 20 -1 N ILE A 15 O VAL A 31 SHEET 3 AA1 5 ASP A 79 TYR A 84 1 O ASP A 79 N LYS A 18 SHEET 4 AA1 5 ARG A 56 PHE A 59 -1 N LEU A 58 O GLU A 82 SHEET 5 AA1 5 ARG A 62 ARG A 63 -1 O ARG A 62 N PHE A 59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1