HEADER ANTIMICROBIAL PROTEIN 10-JUN-17 5XRX TITLE EFK17DA STRUCTURE IN MICROGEL MAA60 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATHELICIDIN ANTIMICROBIAL PEPTIDE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 149-165; COMPND 5 SYNONYM: 18 KDA CATIONIC ANTIMICROBIAL PROTEIN,HCAP-18; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THIS PEPTIDE IS A D ISOMER OF EFK17A THAT HAS BEEN COMPND 8 PREVIOUSLY SUBMITTED (PDB ID: 5XNG) CONTAINING D AMINO ACIDS (DPHE, COMPND 9 DILE) SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 OTHER_DETAILS: IT IS A SYNTHETIC PEPTIDE KEYWDS ANTIMICROBIAL PEPTIDE, HELICAL AND COILED STRUCTURE, PEPTIDE DERIVED KEYWDS 2 FROM HUMAN LL37, D AMINO ACID ISOMER, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.DATTA,A.BHUNIA REVDAT 3 15-MAY-24 5XRX 1 REMARK REVDAT 2 14-JUN-23 5XRX 1 REMARK REVDAT 1 18-APR-18 5XRX 0 JRNL AUTH S.SINGH,A.DATTA,B.C.BORRO,M.DAVOUDI,A.SCHMIDTCHEN,A.BHUNIA, JRNL AUTH 2 M.MALMSTEN JRNL TITL CONFORMATIONAL ASPECTS OF HIGH CONTENT PACKING OF JRNL TITL 2 ANTIMICROBIAL PEPTIDES IN POLYMER MICROGELS JRNL REF ACS APPL MATER INTERFACES V. 9 40094 2017 JRNL REFN ISSN 1944-8252 JRNL PMID 29087182 JRNL DOI 10.1021/ACSAMI.7B13714 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XRX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300004060. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM EFK17DA, 55.5 M H2O, 50 M REMARK 210 D2O, 25 UM MICROGEL MAA60, 0.8 REMARK 210 MM TSP, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H TRNOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : ASCEND TM REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, SPARKY 3.114 REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 9 13.65 59.91 REMARK 500 1 ASP A 11 -77.27 -120.34 REMARK 500 1 PHE A 12 -69.02 71.56 REMARK 500 1 LEU A 16 -56.82 -174.06 REMARK 500 2 ILE A 5 16.34 59.36 REMARK 500 2 ILE A 9 14.28 59.82 REMARK 500 2 ASP A 11 -77.05 -120.38 REMARK 500 2 PHE A 12 -69.22 71.79 REMARK 500 3 ILE A 5 17.30 59.89 REMARK 500 3 ASP A 11 -76.69 -120.51 REMARK 500 3 PHE A 12 -69.22 71.63 REMARK 500 4 ILE A 9 14.28 59.98 REMARK 500 4 ASP A 11 -77.32 -120.35 REMARK 500 4 PHE A 12 -69.16 71.83 REMARK 500 4 LEU A 16 -68.48 71.59 REMARK 500 5 ILE A 9 14.29 59.87 REMARK 500 5 ASP A 11 -77.43 -120.35 REMARK 500 5 PHE A 12 -69.22 71.87 REMARK 500 5 LEU A 16 -68.46 71.62 REMARK 500 6 ASP A 11 -77.22 -120.32 REMARK 500 6 PHE A 12 -69.15 71.86 REMARK 500 6 LEU A 16 -68.42 71.56 REMARK 500 7 ILE A 5 17.27 59.56 REMARK 500 7 ASP A 11 -79.79 -121.59 REMARK 500 7 PHE A 12 -70.35 68.85 REMARK 500 8 ILE A 5 15.84 59.57 REMARK 500 8 ILE A 9 -9.74 77.75 REMARK 500 8 ASP A 11 -81.23 -116.73 REMARK 500 8 PHE A 12 -69.42 71.54 REMARK 500 8 LEU A 16 120.14 65.81 REMARK 500 9 ILE A 9 -9.57 78.26 REMARK 500 9 ASP A 11 -77.07 -119.60 REMARK 500 9 PHE A 12 -69.05 71.97 REMARK 500 10 ILE A 5 17.73 58.88 REMARK 500 10 ILE A 9 -9.75 78.19 REMARK 500 10 ASP A 11 -78.22 -114.98 REMARK 500 10 PHE A 12 -69.12 72.04 REMARK 500 11 ILE A 5 16.62 57.92 REMARK 500 11 ILE A 9 -9.76 77.84 REMARK 500 11 ASP A 11 -80.51 -113.70 REMARK 500 11 PHE A 12 -69.09 71.83 REMARK 500 12 ARG A 4 57.97 -91.12 REMARK 500 12 ASP A 11 -76.63 -120.52 REMARK 500 12 PHE A 12 -69.42 71.64 REMARK 500 13 ILE A 9 -9.86 78.49 REMARK 500 13 ASP A 11 -78.64 -117.73 REMARK 500 13 PHE A 12 -69.26 71.85 REMARK 500 14 ARG A 4 63.20 -108.93 REMARK 500 14 ILE A 9 -9.39 78.39 REMARK 500 14 ASP A 11 -79.28 -119.12 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36098 RELATED DB: BMRB REMARK 900 EFK17DA STRUCTURE IN MICROGEL MAA60 DBREF 5XRX A 1 17 UNP P49913 CAMP_HUMAN 149 165 SEQRES 1 A 17 GLU PHE LYS ARG ILE VAL GLN ARG ILE LYS ASP PHE LEU SEQRES 2 A 17 ARG ASN LEU VAL CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1