HEADER SUGAR BINDING PROTEIN 13-JUN-17 5XSD TITLE XYLFII-LYTSN COMPLEX MUTANT - D103A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC BINDING PROTEIN/LACI TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 25-326; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SIGNAL TRANSDUCTION HISTIDINE KINASE, LYTS; COMPND 9 CHAIN: L; COMPND 10 FRAGMENT: UNP RESIDUES 1-134; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BEIJERINCKII (STRAIN ATCC 51743 / SOURCE 3 NCIMB 8052); SOURCE 4 ORGANISM_TAXID: 290402; SOURCE 5 STRAIN: ATCC 51743 / NCIMB 8052; SOURCE 6 GENE: CBEI_2377; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BEIJERINCKII (STRAIN ATCC 51743 / SOURCE 11 NCIMB 8052); SOURCE 12 ORGANISM_TAXID: 290402; SOURCE 13 STRAIN: ATCC 51743 / NCIMB 8052; SOURCE 14 GENE: CBEI_2378; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TWO COMPONENT SYSTEM, HISTIDINE KINASE, SIGNAL TRANSMISSION ACROSS KEYWDS 2 THE MEMBRANE, D-XYLOSE UPTAKE, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.X.LI,C.Y.WANG,P.ZHANG REVDAT 3 27-MAR-24 5XSD 1 REMARK REVDAT 2 09-AUG-17 5XSD 1 JRNL REVDAT 1 02-AUG-17 5XSD 0 JRNL AUTH J.LI,C.WANG,G.YANG,Z.SUN,H.GUO,K.SHAO,Y.GU,W.JIANG,P.ZHANG JRNL TITL MOLECULAR MECHANISM OF ENVIRONMENTAL D-XYLOSE PERCEPTION BY JRNL TITL 2 A XYLFII-LYTS COMPLEX IN BACTERIA JRNL REF PROC. NATL. ACAD. SCI. V. 114 8235 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28716923 JRNL DOI 10.1073/PNAS.1620183114 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 38377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6463 - 6.0098 0.98 2756 133 0.2033 0.2075 REMARK 3 2 6.0098 - 4.7766 1.00 2662 141 0.2273 0.2370 REMARK 3 3 4.7766 - 4.1747 1.00 2638 136 0.1869 0.2162 REMARK 3 4 4.1747 - 3.7939 1.00 2609 141 0.2150 0.2408 REMARK 3 5 3.7939 - 3.5224 1.00 2615 128 0.2197 0.2551 REMARK 3 6 3.5224 - 3.3150 1.00 2591 135 0.2330 0.2663 REMARK 3 7 3.3150 - 3.1492 1.00 2581 142 0.2487 0.2658 REMARK 3 8 3.1492 - 3.0122 1.00 2587 141 0.2662 0.3110 REMARK 3 9 3.0122 - 2.8964 1.00 2590 133 0.2731 0.2879 REMARK 3 10 2.8964 - 2.7965 1.00 2575 134 0.2748 0.3231 REMARK 3 11 2.7965 - 2.7091 1.00 2563 154 0.2728 0.3420 REMARK 3 12 2.7091 - 2.6317 1.00 2579 117 0.2706 0.2695 REMARK 3 13 2.6317 - 2.5625 1.00 2568 139 0.2709 0.3177 REMARK 3 14 2.5625 - 2.5000 1.00 2571 118 0.2885 0.2867 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5050 REMARK 3 ANGLE : 2.028 6797 REMARK 3 CHIRALITY : 0.134 800 REMARK 3 PLANARITY : 0.007 873 REMARK 3 DIHEDRAL : 14.769 1911 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -0.5458 29.2671 -23.7195 REMARK 3 T TENSOR REMARK 3 T11: 0.3032 T22: 0.3845 REMARK 3 T33: 0.3772 T12: 0.0040 REMARK 3 T13: -0.0372 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 1.0102 L22: 0.4144 REMARK 3 L33: 0.0247 L12: -0.0637 REMARK 3 L13: 0.0806 L23: -0.0594 REMARK 3 S TENSOR REMARK 3 S11: 0.0370 S12: 0.0662 S13: -0.1241 REMARK 3 S21: -0.0788 S22: -0.0404 S23: 0.0099 REMARK 3 S31: -0.0237 S32: -0.0327 S33: -0.0009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XSD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300004076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38385 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M LITHIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE PH 5.5, 20% W/V POLYETHYLENE GLYCOL REMARK 280 1000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.53700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 72.47900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 72.47900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.76850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 72.47900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 72.47900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.30550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 72.47900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.47900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.76850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 72.47900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.47900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.30550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.53700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 ALA A -2 REMARK 465 ARG A -1 REMARK 465 SER A 0 REMARK 465 ASN A 1 REMARK 465 LEU A 2 REMARK 465 LEU A 3 REMARK 465 ARG A 4 REMARK 465 ASP A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 VAL A 8 REMARK 465 GLU A 9 REMARK 465 LYS A 10 REMARK 465 GLU A 11 REMARK 465 PRO A 12 REMARK 465 ILE A 13 REMARK 465 GLY A 51 REMARK 465 PRO A 52 REMARK 465 THR A 53 REMARK 465 THR A 54 REMARK 465 ALA A 55 REMARK 465 SER A 56 REMARK 465 THR A 57 REMARK 465 GLU A 58 REMARK 465 ASP A 59 REMARK 465 GLY A 60 REMARK 465 LEU A 61 REMARK 465 LYS A 62 REMARK 465 LEU A 63 REMARK 465 PHE A 64 REMARK 465 ASP A 65 REMARK 465 MET A 66 REMARK 465 ALA A 67 REMARK 465 THR A 68 REMARK 465 SER A 69 REMARK 465 ALA A 70 REMARK 465 LYS A 71 REMARK 465 GLN A 80 REMARK 465 GLU A 81 REMARK 465 GLU A 82 REMARK 465 GLY A 83 REMARK 465 GLN A 84 REMARK 465 PHE A 275 REMARK 465 SER A 276 REMARK 465 SER A 292 REMARK 465 TYR A 293 REMARK 465 LYS A 294 REMARK 465 ARG A 295 REMARK 465 GLY A 296 REMARK 465 ASP A 297 REMARK 465 ASP A 298 REMARK 465 LYS A 299 REMARK 465 VAL A 300 REMARK 465 GLU A 301 REMARK 465 ASN A 302 REMARK 465 MET B -3 REMARK 465 ALA B -2 REMARK 465 ARG B -1 REMARK 465 SER B 0 REMARK 465 ASN B 1 REMARK 465 LEU B 2 REMARK 465 LEU B 3 REMARK 465 ARG B 4 REMARK 465 ASP B 5 REMARK 465 LYS B 6 REMARK 465 LYS B 7 REMARK 465 VAL B 8 REMARK 465 GLU B 9 REMARK 465 LYS B 10 REMARK 465 GLU B 11 REMARK 465 ASN B 273 REMARK 465 LYS B 274 REMARK 465 PHE B 275 REMARK 465 SER B 276 REMARK 465 SER B 292 REMARK 465 TYR B 293 REMARK 465 LYS B 294 REMARK 465 ARG B 295 REMARK 465 GLY B 296 REMARK 465 ASP B 297 REMARK 465 ASP B 298 REMARK 465 LYS B 299 REMARK 465 VAL B 300 REMARK 465 GLU B 301 REMARK 465 ASN B 302 REMARK 465 MET L -12 REMARK 465 GLY L -11 REMARK 465 SER L -10 REMARK 465 SER L -9 REMARK 465 HIS L -8 REMARK 465 HIS L -7 REMARK 465 HIS L -6 REMARK 465 HIS L -5 REMARK 465 HIS L -4 REMARK 465 HIS L -3 REMARK 465 GLN L -2 REMARK 465 GLY L -1 REMARK 465 SER L 0 REMARK 465 ASN L 122 REMARK 465 SER L 123 REMARK 465 ILE L 124 REMARK 465 ALA L 125 REMARK 465 TYR L 126 REMARK 465 LYS L 127 REMARK 465 GLU L 128 REMARK 465 LEU L 129 REMARK 465 ASN L 130 REMARK 465 ARG L 131 REMARK 465 ASN L 132 REMARK 465 SER L 133 REMARK 465 SER L 134 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 28 OD1 ASP A 232 1.79 REMARK 500 NE ARG B 259 O HOH B 401 1.81 REMARK 500 OD1 ASP L 95 O HOH L 201 1.81 REMARK 500 OE2 GLU A 94 O HOH A 401 1.81 REMARK 500 O SER B 272 O HOH B 402 1.82 REMARK 500 NZ LYS A 147 O HOH A 402 1.83 REMARK 500 OE1 GLU A 157 O HOH A 403 1.84 REMARK 500 ND2 ASN B 220 O HOH B 403 1.85 REMARK 500 N SER B 288 O HOH B 404 1.85 REMARK 500 O ALA A 45 O HOH A 404 1.86 REMARK 500 N ASP A 235 O HOH A 405 1.87 REMARK 500 OD2 ASP B 173 O HOH B 405 1.87 REMARK 500 O HOH A 437 O HOH A 452 1.88 REMARK 500 O HOH A 450 O HOH A 453 1.89 REMARK 500 ND2 ASN B 195 O HOH B 406 1.90 REMARK 500 O GLN L 116 O HOH L 202 1.91 REMARK 500 NE ARG B 189 O HOH B 407 1.92 REMARK 500 NH2 ARG B 189 O HOH B 407 1.92 REMARK 500 OG1 THR B 174 O HOH B 408 1.92 REMARK 500 OD1 ASN B 195 O HOH B 406 1.93 REMARK 500 NZ LYS B 277 O HOH B 401 1.95 REMARK 500 O HOH A 420 O HOH A 435 1.95 REMARK 500 O ASN A 168 O HOH A 406 1.96 REMARK 500 O HOH A 453 O HOH A 456 1.98 REMARK 500 ND1 HIS B 22 O HOH B 409 1.98 REMARK 500 O LEU L 119 O HOH L 203 1.99 REMARK 500 CG LEU L 119 O HOH L 202 2.00 REMARK 500 NH2 ARG A 43 OD1 ASP A 266 2.02 REMARK 500 OE2 GLU A 269 O HOH A 407 2.03 REMARK 500 N SER A 91 O HOH A 408 2.04 REMARK 500 O ASN B 90 O HOH B 410 2.04 REMARK 500 NE2 GLN A 161 O HOH A 409 2.06 REMARK 500 CD ARG B 259 O HOH B 401 2.06 REMARK 500 N SER A 253 O HOH A 410 2.07 REMARK 500 OE2 GLU B 42 O HOH B 411 2.08 REMARK 500 O LYS A 88 O HOH A 408 2.08 REMARK 500 O HOH L 201 O HOH L 214 2.09 REMARK 500 N ASN B 197 O HOH B 412 2.09 REMARK 500 N ALA A 92 O HOH A 408 2.09 REMARK 500 CA HIS B 22 O HOH B 409 2.10 REMARK 500 OD1 ASP L 65 O HOH L 204 2.10 REMARK 500 N VAL L 98 O HOH L 205 2.11 REMARK 500 O TYR B 114 OG SER B 278 2.12 REMARK 500 OD2 ASP B 105 NH1 ARG B 111 2.14 REMARK 500 N LEU L 119 O HOH L 202 2.15 REMARK 500 O HOH A 447 O HOH A 455 2.15 REMARK 500 CG ASN B 195 O HOH B 406 2.16 REMARK 500 O LEU B 181 O HOH B 413 2.17 REMARK 500 OD1 ASP A 223 O HOH A 411 2.17 REMARK 500 NZ LYS A 271 O HOH A 412 2.17 REMARK 500 REMARK 500 THIS ENTRY HAS 54 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CA GLY A 145 CD2 LEU A 181 7555 1.58 REMARK 500 O LEU A 181 O LEU A 181 7555 1.59 REMARK 500 CG MET B 180 OE2 GLU B 183 8554 2.00 REMARK 500 C GLY A 145 CD2 LEU A 181 7555 2.02 REMARK 500 OD1 ASN L 28 O HOH A 401 8554 2.11 REMARK 500 O GLY A 145 CD2 LEU A 181 7555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 23 CB - CA - C ANGL. DEV. = 12.0 DEGREES REMARK 500 ILE A 23 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 GLY A 146 N - CA - C ANGL. DEV. = -15.3 DEGREES REMARK 500 LEU A 181 CB - CA - C ANGL. DEV. = -14.6 DEGREES REMARK 500 LEU A 181 N - CA - C ANGL. DEV. = 20.1 DEGREES REMARK 500 LEU A 182 CB - CG - CD2 ANGL. DEV. = 13.1 DEGREES REMARK 500 ALA A 184 CB - CA - C ANGL. DEV. = -15.2 DEGREES REMARK 500 ASP A 231 N - CA - C ANGL. DEV. = 26.6 DEGREES REMARK 500 ASP A 232 N - CA - C ANGL. DEV. = 18.2 DEGREES REMARK 500 ASP B 178 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 LEU B 182 C - N - CA ANGL. DEV. = 30.4 DEGREES REMARK 500 LEU B 182 CB - CA - C ANGL. DEV. = -31.0 DEGREES REMARK 500 LEU B 182 N - CA - C ANGL. DEV. = 34.5 DEGREES REMARK 500 ASP B 231 CB - CA - C ANGL. DEV. = -21.5 DEGREES REMARK 500 ASP B 231 N - CA - C ANGL. DEV. = 42.6 DEGREES REMARK 500 ASP B 232 N - CA - C ANGL. DEV. = 29.5 DEGREES REMARK 500 ASP L 95 CB - CA - C ANGL. DEV. = -18.1 DEGREES REMARK 500 ASP L 95 N - CA - C ANGL. DEV. = 19.3 DEGREES REMARK 500 GLU L 120 CB - CA - C ANGL. DEV. = -29.3 DEGREES REMARK 500 GLU L 120 N - CA - C ANGL. DEV. = 49.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 103 -62.75 81.40 REMARK 500 GLU A 106 72.50 -112.39 REMARK 500 MET A 180 74.22 50.43 REMARK 500 LEU A 181 21.86 84.17 REMARK 500 GLU A 183 94.65 -61.90 REMARK 500 ALA A 184 -56.66 73.36 REMARK 500 ASP A 223 6.99 57.95 REMARK 500 ASP A 231 1.80 82.90 REMARK 500 LEU A 233 151.71 -48.81 REMARK 500 ASN A 273 -3.07 82.33 REMARK 500 SER B 56 116.65 -168.58 REMARK 500 ALA B 103 -44.27 65.53 REMARK 500 GLU B 106 78.92 -107.57 REMARK 500 ARG B 111 128.60 -33.83 REMARK 500 ALA B 179 0.52 85.92 REMARK 500 LEU B 182 126.25 -36.21 REMARK 500 ASP B 232 26.10 44.71 REMARK 500 SER B 278 36.09 -150.65 REMARK 500 ASN L 86 45.83 -102.69 REMARK 500 LYS L 87 44.94 34.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 181 LEU A 182 -35.18 REMARK 500 GLU A 183 ALA A 184 91.87 REMARK 500 GLU L 120 ALA L 121 148.21 REMARK 500 REMARK 500 REMARK: NULL DBREF 5XSD A 1 302 UNP A6LW07 A6LW07_CLOB8 25 326 DBREF 5XSD B 1 302 UNP A6LW07 A6LW07_CLOB8 25 326 DBREF 5XSD L 1 134 UNP A6LW08 A6LW08_CLOB8 1 134 SEQADV 5XSD MET A -3 UNP A6LW07 EXPRESSION TAG SEQADV 5XSD ALA A -2 UNP A6LW07 EXPRESSION TAG SEQADV 5XSD ARG A -1 UNP A6LW07 EXPRESSION TAG SEQADV 5XSD SER A 0 UNP A6LW07 EXPRESSION TAG SEQADV 5XSD ALA A 103 UNP A6LW07 ASP 127 ENGINEERED MUTATION SEQADV 5XSD MET B -3 UNP A6LW07 EXPRESSION TAG SEQADV 5XSD ALA B -2 UNP A6LW07 EXPRESSION TAG SEQADV 5XSD ARG B -1 UNP A6LW07 EXPRESSION TAG SEQADV 5XSD SER B 0 UNP A6LW07 EXPRESSION TAG SEQADV 5XSD ALA B 103 UNP A6LW07 ASP 127 ENGINEERED MUTATION SEQADV 5XSD MET L -12 UNP A6LW08 EXPRESSION TAG SEQADV 5XSD GLY L -11 UNP A6LW08 EXPRESSION TAG SEQADV 5XSD SER L -10 UNP A6LW08 EXPRESSION TAG SEQADV 5XSD SER L -9 UNP A6LW08 EXPRESSION TAG SEQADV 5XSD HIS L -8 UNP A6LW08 EXPRESSION TAG SEQADV 5XSD HIS L -7 UNP A6LW08 EXPRESSION TAG SEQADV 5XSD HIS L -6 UNP A6LW08 EXPRESSION TAG SEQADV 5XSD HIS L -5 UNP A6LW08 EXPRESSION TAG SEQADV 5XSD HIS L -4 UNP A6LW08 EXPRESSION TAG SEQADV 5XSD HIS L -3 UNP A6LW08 EXPRESSION TAG SEQADV 5XSD GLN L -2 UNP A6LW08 EXPRESSION TAG SEQADV 5XSD GLY L -1 UNP A6LW08 EXPRESSION TAG SEQADV 5XSD SER L 0 UNP A6LW08 EXPRESSION TAG SEQRES 1 A 306 MET ALA ARG SER ASN LEU LEU ARG ASP LYS LYS VAL GLU SEQRES 2 A 306 LYS GLU PRO ILE LYS PRO LYS ILE VAL LEU ILE SER HIS SEQRES 3 A 306 ILE LYS THR ASN PRO TYR TRP LEU ASP ILE LYS ALA GLY SEQRES 4 A 306 ALA GLU ARG ALA ALA LYS GLU ARG GLY ALA VAL VAL GLU SEQRES 5 A 306 PHE LEU GLY PRO THR THR ALA SER THR GLU ASP GLY LEU SEQRES 6 A 306 LYS LEU PHE ASP MET ALA THR SER ALA LYS VAL SER GLY SEQRES 7 A 306 ILE ILE THR TYR VAL GLN GLU GLU GLY GLN TYR LYS LYS SEQRES 8 A 306 LYS ILE ASN SER ALA MET GLU LYS GLY ILE PRO VAL VAL SEQRES 9 A 306 THR ILE ALA SER ASP GLU GLU ASP SER ASN ARG ILE ALA SEQRES 10 A 306 TYR VAL GLY THR ASP ASN VAL LEU ALA GLY GLN VAL ALA SEQRES 11 A 306 GLY LYS GLU MET VAL LYS GLN ILE GLY THR SER GLY ASN SEQRES 12 A 306 VAL ALA ILE VAL MET GLY GLY LYS ASN VAL LYS ASN GLN SEQRES 13 A 306 LYS GLU ARG VAL GLU GLY PHE THR GLN TYR ILE LYS SER SEQRES 14 A 306 ASN SER ASN LEU LYS ILE VAL ASP THR ASP SER SER ASP SEQRES 15 A 306 ALA MET LEU LEU GLU ALA GLU ILE ILE THR ARG LYS ILE SEQRES 16 A 306 LEU ASN ARG ASN ASP ASN ILE ASN ALA LEU PHE CYS THR SEQRES 17 A 306 SER ALA LEU ASP GLY ILE GLY ALA ALA ARG ALA VAL LYS SEQRES 18 A 306 ASP LEU ASN TYR LYS ASP ARG VAL LYS ILE ILE CYS PHE SEQRES 19 A 306 ASP ASP LEU ASP ASP THR LEU SER ASN ILE ARG ASN GLY SEQRES 20 A 306 LEU VAL SER ALA THR ILE VAL GLN LYS SER ASN GLU MET SEQRES 21 A 306 GLY TYR ARG ALA VAL ASN ILE ILE MET ASP LYS ILE GLU SEQRES 22 A 306 GLY LYS SER ASN LYS PHE SER LYS SER LEU ILE ASP VAL SEQRES 23 A 306 ASN VAL ILE ASN LYS SER ASP VAL ASP SER TYR LYS ARG SEQRES 24 A 306 GLY ASP ASP LYS VAL GLU ASN SEQRES 1 B 306 MET ALA ARG SER ASN LEU LEU ARG ASP LYS LYS VAL GLU SEQRES 2 B 306 LYS GLU PRO ILE LYS PRO LYS ILE VAL LEU ILE SER HIS SEQRES 3 B 306 ILE LYS THR ASN PRO TYR TRP LEU ASP ILE LYS ALA GLY SEQRES 4 B 306 ALA GLU ARG ALA ALA LYS GLU ARG GLY ALA VAL VAL GLU SEQRES 5 B 306 PHE LEU GLY PRO THR THR ALA SER THR GLU ASP GLY LEU SEQRES 6 B 306 LYS LEU PHE ASP MET ALA THR SER ALA LYS VAL SER GLY SEQRES 7 B 306 ILE ILE THR TYR VAL GLN GLU GLU GLY GLN TYR LYS LYS SEQRES 8 B 306 LYS ILE ASN SER ALA MET GLU LYS GLY ILE PRO VAL VAL SEQRES 9 B 306 THR ILE ALA SER ASP GLU GLU ASP SER ASN ARG ILE ALA SEQRES 10 B 306 TYR VAL GLY THR ASP ASN VAL LEU ALA GLY GLN VAL ALA SEQRES 11 B 306 GLY LYS GLU MET VAL LYS GLN ILE GLY THR SER GLY ASN SEQRES 12 B 306 VAL ALA ILE VAL MET GLY GLY LYS ASN VAL LYS ASN GLN SEQRES 13 B 306 LYS GLU ARG VAL GLU GLY PHE THR GLN TYR ILE LYS SER SEQRES 14 B 306 ASN SER ASN LEU LYS ILE VAL ASP THR ASP SER SER ASP SEQRES 15 B 306 ALA MET LEU LEU GLU ALA GLU ILE ILE THR ARG LYS ILE SEQRES 16 B 306 LEU ASN ARG ASN ASP ASN ILE ASN ALA LEU PHE CYS THR SEQRES 17 B 306 SER ALA LEU ASP GLY ILE GLY ALA ALA ARG ALA VAL LYS SEQRES 18 B 306 ASP LEU ASN TYR LYS ASP ARG VAL LYS ILE ILE CYS PHE SEQRES 19 B 306 ASP ASP LEU ASP ASP THR LEU SER ASN ILE ARG ASN GLY SEQRES 20 B 306 LEU VAL SER ALA THR ILE VAL GLN LYS SER ASN GLU MET SEQRES 21 B 306 GLY TYR ARG ALA VAL ASN ILE ILE MET ASP LYS ILE GLU SEQRES 22 B 306 GLY LYS SER ASN LYS PHE SER LYS SER LEU ILE ASP VAL SEQRES 23 B 306 ASN VAL ILE ASN LYS SER ASP VAL ASP SER TYR LYS ARG SEQRES 24 B 306 GLY ASP ASP LYS VAL GLU ASN SEQRES 1 L 147 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLN GLY SER SEQRES 2 L 147 MET LEU ASN ASN MET LEU ILE THR ASN GLU ILE LYS GLN SEQRES 3 L 147 HIS VAL ASP SER SER LEU ASP ASN PHE ASN GLN TYR ILE SEQRES 4 L 147 LEU ASN GLY THR PRO SER LYS LYS GLU SER TYR ASN ASN SEQRES 5 L 147 GLU VAL ILE LEU ALA LYS GLN LYS ILE GLY ASN LEU LYS SEQRES 6 L 147 LYS ASN SER ASP ASP VAL ASN GLN TYR ILE LEU ARG ASP SEQRES 7 L 147 LEU ASP ASN THR LEU ASP SER TYR ILE GLU SER SER LYS SEQRES 8 L 147 ASN THR ILE SER ALA TYR GLU ASN LYS GLU GLY TYR VAL SEQRES 9 L 147 PHE TYR TYR ASP ASP PHE VAL ALA ALA LYS ASN ILE ALA SEQRES 10 L 147 SER TYR CYS ASP ALA TYR ALA SER THR LEU MET GLN ASN SEQRES 11 L 147 PHE LEU GLU ALA ASN SER ILE ALA TYR LYS GLU LEU ASN SEQRES 12 L 147 ARG ASN SER SER FORMUL 4 HOH *140(H2 O) HELIX 1 AA1 ASN A 26 GLY A 44 1 19 HELIX 2 AA2 LYS A 86 LYS A 95 1 10 HELIX 3 AA3 ASP A 118 GLY A 135 1 18 HELIX 4 AA4 VAL A 149 SER A 167 1 19 HELIX 5 AA5 GLU A 185 ASN A 195 1 11 HELIX 6 AA6 SER A 205 LEU A 219 1 15 HELIX 7 AA7 LEU A 233 ASN A 242 1 10 HELIX 8 AA8 LYS A 252 GLU A 269 1 18 HELIX 9 AA9 SER A 288 ASP A 291 5 4 HELIX 10 AB1 ASN B 26 GLY B 44 1 19 HELIX 11 AB2 SER B 56 ALA B 70 1 15 HELIX 12 AB3 TYR B 85 LYS B 95 1 11 HELIX 13 AB4 ASP B 118 GLY B 135 1 18 HELIX 14 AB5 VAL B 149 SER B 167 1 19 HELIX 15 AB6 GLU B 183 ASN B 195 1 13 HELIX 16 AB7 SER B 205 LEU B 219 1 15 HELIX 17 AB8 LEU B 233 ASN B 242 1 10 HELIX 18 AB9 LYS B 252 GLU B 269 1 18 HELIX 19 AC1 SER B 288 ASP B 291 5 4 HELIX 20 AC2 LEU L 2 GLY L 29 1 28 HELIX 21 AC3 THR L 30 LYS L 53 1 24 HELIX 22 AC4 VAL L 58 ASN L 86 1 29 HELIX 23 AC5 GLY L 89 PHE L 92 5 4 HELIX 24 AC6 TYR L 93 PHE L 118 1 26 SHEET 1 AA1 6 VAL A 46 LEU A 50 0 SHEET 2 AA1 6 LYS A 16 ILE A 20 1 N LEU A 19 O GLU A 48 SHEET 3 AA1 6 GLY A 74 THR A 77 1 O ILE A 76 N VAL A 18 SHEET 4 AA1 6 VAL A 99 ILE A 102 1 O ILE A 102 N THR A 77 SHEET 5 AA1 6 ALA A 113 THR A 117 1 O VAL A 115 N THR A 101 SHEET 6 AA1 6 SER A 278 ILE A 280 1 O ILE A 280 N GLY A 116 SHEET 1 AA2 6 LYS A 170 VAL A 172 0 SHEET 2 AA2 6 ASN A 139 VAL A 143 1 N VAL A 140 O VAL A 172 SHEET 3 AA2 6 ALA A 200 CYS A 203 1 O PHE A 202 N ALA A 141 SHEET 4 AA2 6 LYS A 226 PHE A 230 1 O ILE A 228 N CYS A 203 SHEET 5 AA2 6 ALA A 247 GLN A 251 1 O ILE A 249 N CYS A 229 SHEET 6 AA2 6 VAL A 282 ASN A 286 -1 O ILE A 285 N THR A 248 SHEET 1 AA3 6 VAL B 46 LEU B 50 0 SHEET 2 AA3 6 LYS B 16 ILE B 20 1 N LEU B 19 O LEU B 50 SHEET 3 AA3 6 GLY B 74 THR B 77 1 O ILE B 76 N VAL B 18 SHEET 4 AA3 6 VAL B 99 ILE B 102 1 O VAL B 100 N THR B 77 SHEET 5 AA3 6 ALA B 113 THR B 117 1 O VAL B 115 N THR B 101 SHEET 6 AA3 6 LEU B 279 ILE B 280 1 O ILE B 280 N GLY B 116 SHEET 1 AA4 6 LYS B 170 VAL B 172 0 SHEET 2 AA4 6 ASN B 139 VAL B 143 1 N VAL B 140 O VAL B 172 SHEET 3 AA4 6 ALA B 200 CYS B 203 1 O PHE B 202 N VAL B 143 SHEET 4 AA4 6 LYS B 226 PHE B 230 1 O ILE B 228 N CYS B 203 SHEET 5 AA4 6 ALA B 247 GLN B 251 1 O ILE B 249 N CYS B 229 SHEET 6 AA4 6 VAL B 282 ASN B 286 -1 O ASN B 283 N VAL B 250 CISPEP 1 SER A 272 ASN A 273 0 -22.93 CISPEP 2 LYS B 277 SER B 278 0 -8.41 CRYST1 144.958 144.958 103.074 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006899 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006899 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009702 0.00000