HEADER HORMONE 14-JUN-17 5XSK TITLE CRYSTAL STRUCTURE OF PWWP-DNA COMPLEX FOR HUMAN HEPATOMA-DERIVED TITLE 2 GROWTH FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(P*TP*TP*CP*AP*AP*GP*AP*CP*CP*A)-3'); COMPND 3 CHAIN: D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*TP*GP*GP*TP*CP*TP*TP*GP*AP*A)-3'); COMPND 7 CHAIN: F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HEPATOMA-DERIVED GROWTH FACTOR; COMPND 11 CHAIN: A, B; COMPND 12 FRAGMENT: UNP RESIDUES 1-100; COMPND 13 SYNONYM: HDGF; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI BL21; SOURCE 3 ORGANISM_TAXID: 511693; SOURCE 4 STRAIN: CODON PLUS RIL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: CODON PLUS RIL; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI BL21; SOURCE 10 ORGANISM_TAXID: 511693; SOURCE 11 STRAIN: CODON PLUS RIL; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: CODON PLUS RIL; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 17 ORGANISM_COMMON: RAT; SOURCE 18 ORGANISM_TAXID: 10116; SOURCE 19 GENE: HDGF; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: CODON PLUS RIL KEYWDS GROWTH FACTOR, HORMONE EXPDTA X-RAY DIFFRACTION AUTHOR L.Y.CHEN,Y.C.HUANG,Y.C.HSIEH,P.J.LIN,C.J.CHEN REVDAT 3 22-NOV-23 5XSK 1 REMARK REVDAT 2 27-JUN-18 5XSK 1 REMARK REVDAT 1 20-JUN-18 5XSK 0 JRNL AUTH L.Y.CHEN,Y.C.HUANG,Y.C.HSIEH,P.J.LIN JRNL TITL STRUCTURE OF PWWP-DNA COMPLEX AT 2.84 ANGSTROMS RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 5138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 278 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 230 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 54.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1477 REMARK 3 NUCLEIC ACID ATOMS : 410 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.482 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.400 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.851 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1997 ; 0.010 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 1672 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2772 ; 1.493 ; 1.765 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3900 ; 1.093 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 179 ; 7.135 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;33.519 ;24.521 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 268 ;17.776 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;33.214 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 259 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1935 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 451 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 722 ; 2.613 ; 4.261 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 721 ; 2.612 ; 4.257 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 899 ; 4.379 ; 6.384 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 900 ; 4.378 ; 6.388 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1275 ; 2.911 ; 5.072 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1276 ; 2.910 ; 5.073 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1874 ; 4.661 ; 7.509 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2354 ; 6.940 ;40.855 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2355 ; 6.941 ;40.864 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XSK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300004099. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5853 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.840 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : 0.13500 REMARK 200 FOR THE DATA SET : 17.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.58500 REMARK 200 R SYM FOR SHELL (I) : 0.50700 REMARK 200 FOR SHELL : 2.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5XSL REMARK 200 REMARK 200 REMARK: EXTENDED DIMERIC SHAPE WITH DNA REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM NITRATE, SODIUM PHOSPHATE REMARK 280 DIBASIC, AMMONIUM SULFATE, TRIS, BICINE, MPD, PEG 1000, PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.60667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 137.21333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 ARG A 6 REMARK 465 GLN A 7 REMARK 465 SER A 98 REMARK 465 GLY A 99 REMARK 465 TYR A 100 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ARG B 3 REMARK 465 SER B 4 REMARK 465 ASN B 5 REMARK 465 ARG B 6 REMARK 465 SER B 98 REMARK 465 GLY B 99 REMARK 465 TYR B 100 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OP1 DT D 1 O3' DA D 10 1545 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 29 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 9 125.52 69.05 REMARK 500 THR A 41 -28.14 -142.41 REMARK 500 GLU A 67 -61.06 76.83 REMARK 500 SER A 69 34.78 -153.80 REMARK 500 ASN A 92 50.90 -145.84 REMARK 500 LYS B 8 -144.77 -136.52 REMARK 500 GLU B 9 60.01 16.87 REMARK 500 GLU B 67 -70.49 83.29 REMARK 500 SER B 69 23.42 -146.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 201 DBREF 5XSK D 1 10 PDB 5XSK 5XSK 1 10 DBREF 5XSK F 11 20 PDB 5XSK 5XSK 11 20 DBREF 5XSK A 1 100 UNP Q8VHK7 HDGF_RAT 1 100 DBREF 5XSK B 1 100 UNP Q8VHK7 HDGF_RAT 1 100 SEQADV 5XSK MET A -19 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK GLY A -18 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK SER A -17 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK SER A -16 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK HIS A -15 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK HIS A -14 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK HIS A -13 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK HIS A -12 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK HIS A -11 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK HIS A -10 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK SER A -9 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK SER A -8 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK GLY A -7 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK LEU A -6 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK VAL A -5 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK PRO A -4 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK ARG A -3 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK GLY A -2 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK SER A -1 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK HIS A 0 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK MET B -19 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK GLY B -18 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK SER B -17 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK SER B -16 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK HIS B -15 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK HIS B -14 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK HIS B -13 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK HIS B -12 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK HIS B -11 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK HIS B -10 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK SER B -9 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK SER B -8 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK GLY B -7 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK LEU B -6 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK VAL B -5 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK PRO B -4 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK ARG B -3 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK GLY B -2 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK SER B -1 UNP Q8VHK7 EXPRESSION TAG SEQADV 5XSK HIS B 0 UNP Q8VHK7 EXPRESSION TAG SEQRES 1 D 10 DT DT DC DA DA DG DA DC DC DA SEQRES 1 F 10 DT DG DG DT DC DT DT DG DA DA SEQRES 1 A 120 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 120 LEU VAL PRO ARG GLY SER HIS MET SER ARG SER ASN ARG SEQRES 3 A 120 GLN LYS GLU TYR LYS CYS GLY ASP LEU VAL PHE ALA LYS SEQRES 4 A 120 MET LYS GLY TYR PRO HIS TRP PRO ALA ARG ILE ASP GLU SEQRES 5 A 120 MET PRO GLU ALA ALA VAL LYS SER THR ALA ASN LYS TYR SEQRES 6 A 120 GLN VAL PHE PHE PHE GLY THR HIS GLU THR ALA PHE LEU SEQRES 7 A 120 GLY PRO LYS ASP LEU PHE PRO TYR GLU GLU SER LYS GLU SEQRES 8 A 120 LYS PHE GLY LYS PRO ASN LYS ARG LYS GLY PHE SER GLU SEQRES 9 A 120 GLY LEU TRP GLU ILE GLU ASN ASN PRO THR VAL LYS ALA SEQRES 10 A 120 SER GLY TYR SEQRES 1 B 120 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 120 LEU VAL PRO ARG GLY SER HIS MET SER ARG SER ASN ARG SEQRES 3 B 120 GLN LYS GLU TYR LYS CYS GLY ASP LEU VAL PHE ALA LYS SEQRES 4 B 120 MET LYS GLY TYR PRO HIS TRP PRO ALA ARG ILE ASP GLU SEQRES 5 B 120 MET PRO GLU ALA ALA VAL LYS SER THR ALA ASN LYS TYR SEQRES 6 B 120 GLN VAL PHE PHE PHE GLY THR HIS GLU THR ALA PHE LEU SEQRES 7 B 120 GLY PRO LYS ASP LEU PHE PRO TYR GLU GLU SER LYS GLU SEQRES 8 B 120 LYS PHE GLY LYS PRO ASN LYS ARG LYS GLY PHE SER GLU SEQRES 9 B 120 GLY LEU TRP GLU ILE GLU ASN ASN PRO THR VAL LYS ALA SEQRES 10 B 120 SER GLY TYR HET MPD A 201 8 HET MPD B 201 8 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 5 MPD 2(C6 H14 O2) HELIX 1 AA1 PRO A 34 SER A 40 1 7 HELIX 2 AA2 GLY A 59 LYS A 61 5 3 HELIX 3 AA3 SER A 69 GLY A 74 1 6 HELIX 4 AA4 GLY A 81 ASN A 92 1 12 HELIX 5 AA5 PRO B 34 ALA B 42 1 9 HELIX 6 AA6 GLY B 59 LYS B 61 5 3 HELIX 7 AA7 GLY B 81 ASN B 92 1 12 SHEET 1 AA1 5 THR B 55 LEU B 58 0 SHEET 2 AA1 5 TYR B 45 PHE B 49 -1 N TYR B 45 O LEU B 58 SHEET 3 AA1 5 TRP A 26 ASP A 31 -1 N ASP A 31 O GLN B 46 SHEET 4 AA1 5 LEU A 15 ALA A 18 -1 N VAL A 16 O ALA A 28 SHEET 5 AA1 5 LEU B 63 PRO B 65 -1 O PHE B 64 N PHE A 17 SHEET 1 AA2 5 THR A 55 LEU A 58 0 SHEET 2 AA2 5 TYR A 45 PHE A 49 -1 N VAL A 47 O ALA A 56 SHEET 3 AA2 5 TRP B 26 ASP B 31 -1 O ASP B 31 N GLN A 46 SHEET 4 AA2 5 LEU B 15 ALA B 18 -1 N VAL B 16 O ALA B 28 SHEET 5 AA2 5 LEU A 63 PRO A 65 -1 N PHE A 64 O PHE B 17 SITE 1 AC1 4 THR A 52 GLU A 54 MET B 20 TYR B 23 SITE 1 AC2 3 TYR A 23 THR B 52 GLU B 54 CRYST1 32.402 32.402 205.820 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030862 0.017818 0.000000 0.00000 SCALE2 0.000000 0.035637 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004859 0.00000