HEADER DNA BINDING PROTEIN 14-JUN-17 5XSO TITLE CRYSTAL STRUCTURE OF FULL-LENGTH FIXJ FROM B. JAPONICUM CRYSTALLIZED TITLE 2 IN SPACE GROUP C2221 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESPONSE REGULATOR FIXJ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM JAPONICUM; SOURCE 3 ORGANISM_TAXID: 375; SOURCE 4 GENE: FIXJ, AF336_29235; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS RESPONSE REGULATER, FIXJ/NARL FAMILY, DNA BINDING PROTEIN, FULL- KEYWDS 2 LENGTH, UNPHOSPHORYLATED MONOMERIC STATE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NISHIZONO,T.HISANO,H.SAWAI,Y.SHIRO,H.NAKAMURA,G.S.A.WRIGHT,A.SAEKI, AUTHOR 2 T.HIKIMA,M.YAMAMOTO,S.V.ANTONYUK,S.S.HASNAIN REVDAT 2 27-MAR-24 5XSO 1 REMARK REVDAT 1 23-MAY-18 5XSO 0 JRNL AUTH G.S.A.WRIGHT,A.SAEKI,T.HIKIMA,Y.NISHIZONO,T.HISANO,M.KAMAYA, JRNL AUTH 2 K.NUKINA,H.NISHITANI,H.NAKAMURA,M.YAMAMOTO,S.V.ANTONYUK, JRNL AUTH 3 S.S.HASNAIN,Y.SHIRO,H.SAWAI JRNL TITL ARCHITECTURE OF THE COMPLETE OXYGEN-SENSING FIXL-FIXJ JRNL TITL 2 TWO-COMPONENT SIGNAL TRANSDUCTION SYSTEM. JRNL REF SCI SIGNAL V. 11 2018 JRNL REFN ESSN 1937-9145 JRNL PMID 29636388 JRNL DOI 10.1126/SCISIGNAL.AAQ0825 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.3 REMARK 3 NUMBER OF REFLECTIONS : 53635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.330 REMARK 3 FREE R VALUE TEST SET COUNT : 3397 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6837 - 5.1261 1.00 2455 164 0.1841 0.2295 REMARK 3 2 5.1261 - 4.0700 1.00 2451 169 0.1383 0.1726 REMARK 3 3 4.0700 - 3.5559 1.00 2434 166 0.1479 0.1859 REMARK 3 4 3.5559 - 3.2310 1.00 2493 160 0.1610 0.2258 REMARK 3 5 3.2310 - 2.9995 1.00 2448 167 0.1695 0.2198 REMARK 3 6 2.9995 - 2.8227 1.00 2432 166 0.1651 0.2020 REMARK 3 7 2.8227 - 2.6814 1.00 2464 167 0.1740 0.1859 REMARK 3 8 2.6814 - 2.5647 1.00 2475 166 0.1676 0.2063 REMARK 3 9 2.5647 - 2.4659 1.00 2431 170 0.1728 0.1797 REMARK 3 10 2.4659 - 2.3809 1.00 2481 171 0.1688 0.1981 REMARK 3 11 2.3809 - 2.3064 1.00 2418 162 0.1653 0.2044 REMARK 3 12 2.3064 - 2.2405 1.00 2458 168 0.1793 0.1703 REMARK 3 13 2.2405 - 2.1815 0.99 2436 165 0.1725 0.2282 REMARK 3 14 2.1815 - 2.1283 0.96 2363 161 0.1811 0.2273 REMARK 3 15 2.1283 - 2.0799 0.93 2294 151 0.1850 0.1996 REMARK 3 16 2.0799 - 2.0357 0.87 2103 141 0.1842 0.2084 REMARK 3 17 2.0357 - 1.9949 0.81 2006 137 0.1864 0.2210 REMARK 3 18 1.9949 - 1.9573 0.75 1813 120 0.1937 0.2249 REMARK 3 19 1.9573 - 1.9223 0.70 1739 115 0.2057 0.2144 REMARK 3 20 1.9223 - 1.8898 0.63 1533 101 0.2235 0.2109 REMARK 3 21 1.8898 - 1.8593 0.57 1404 104 0.2219 0.2227 REMARK 3 22 1.8593 - 1.8307 0.49 1198 79 0.2211 0.2795 REMARK 3 23 1.8307 - 1.8037 0.43 1072 71 0.2475 0.3002 REMARK 3 24 1.8037 - 1.7783 0.34 837 56 0.2764 0.3131 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 1627 REMARK 3 ANGLE : 1.268 2187 REMARK 3 CHIRALITY : 0.088 251 REMARK 3 PLANARITY : 0.008 284 REMARK 3 DIHEDRAL : 8.011 1366 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0194 12.1564 13.2311 REMARK 3 T TENSOR REMARK 3 T11: 0.1468 T22: 0.2403 REMARK 3 T33: 0.2682 T12: -0.0874 REMARK 3 T13: -0.0880 T23: 0.1287 REMARK 3 L TENSOR REMARK 3 L11: 2.1227 L22: 3.5027 REMARK 3 L33: 3.5890 L12: 1.4366 REMARK 3 L13: -0.0421 L23: 0.5160 REMARK 3 S TENSOR REMARK 3 S11: 0.0809 S12: -0.4348 S13: -0.5225 REMARK 3 S21: 0.0381 S22: 0.3964 S23: -0.1420 REMARK 3 S31: 0.0231 S32: 0.6198 S33: -0.2916 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9303 6.2366 39.2738 REMARK 3 T TENSOR REMARK 3 T11: 0.6825 T22: 0.4143 REMARK 3 T33: 0.0770 T12: 0.1540 REMARK 3 T13: 0.1094 T23: 0.1711 REMARK 3 L TENSOR REMARK 3 L11: 2.5569 L22: 8.2394 REMARK 3 L33: 6.2987 L12: -1.5020 REMARK 3 L13: 2.5744 L23: -6.7321 REMARK 3 S TENSOR REMARK 3 S11: -0.2207 S12: 0.7603 S13: 0.3479 REMARK 3 S21: -0.6542 S22: -0.0420 S23: -0.0461 REMARK 3 S31: -0.3025 S32: 0.0927 S33: 0.1793 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0027 -3.7132 51.5099 REMARK 3 T TENSOR REMARK 3 T11: 0.1476 T22: 0.1211 REMARK 3 T33: 0.0837 T12: 0.0689 REMARK 3 T13: -0.0449 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 3.5074 L22: 3.9832 REMARK 3 L33: 2.0023 L12: 0.1791 REMARK 3 L13: -0.3913 L23: 0.5440 REMARK 3 S TENSOR REMARK 3 S11: 0.0574 S12: 0.2963 S13: 0.0103 REMARK 3 S21: -0.6438 S22: -0.3916 S23: 0.3472 REMARK 3 S31: 0.0390 S32: -0.0406 S33: 0.2311 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7308 16.6064 30.6599 REMARK 3 T TENSOR REMARK 3 T11: 0.8003 T22: 0.5814 REMARK 3 T33: 0.3716 T12: 0.0637 REMARK 3 T13: -0.0712 T23: 0.2030 REMARK 3 L TENSOR REMARK 3 L11: 2.0004 L22: 2.4378 REMARK 3 L33: 9.8815 L12: -4.5519 REMARK 3 L13: 5.9686 L23: 0.1279 REMARK 3 S TENSOR REMARK 3 S11: -0.0462 S12: 0.4316 S13: 0.8722 REMARK 3 S21: -0.0006 S22: -0.0443 S23: 0.2106 REMARK 3 S31: -1.3734 S32: 0.2087 S33: 0.0942 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5XSO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300004110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53635 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 45.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.83200 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX 1.9_1692 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, PEG 1000, SODIUM FORMATE, REMARK 280 GLYCEROL, TRIS-HCL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.06050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.06050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.42450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.66750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.42450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.66750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.06050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.42450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.66750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.06050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.42450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.66750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -9 REMARK 465 PRO A -8 REMARK 465 GLY A -7 REMARK 465 TYR A -6 REMARK 465 GLN A -5 REMARK 465 ASP A -4 REMARK 465 PRO A -3 REMARK 465 ASN A -2 REMARK 465 SER A -1 REMARK 465 VAL A 0 REMARK 465 MET A 1 REMARK 465 ASN A 204 REMARK 465 ASP A 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 38 CG CD OE1 NE2 REMARK 470 LEU A 61 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 684 O HOH A 740 1.89 REMARK 500 O HOH A 593 O HOH A 658 1.97 REMARK 500 O PRO A 59 O HOH A 501 2.04 REMARK 500 O HOH A 651 O HOH A 691 2.09 REMARK 500 NH2 ARG A 165 O HOH A 502 2.10 REMARK 500 O HOH A 658 O HOH A 662 2.11 REMARK 500 O HOH A 676 O HOH A 682 2.11 REMARK 500 O HOH A 685 O HOH A 687 2.11 REMARK 500 O HOH A 629 O HOH A 700 2.13 REMARK 500 O HOH A 655 O HOH A 737 2.15 REMARK 500 O HOH A 624 O HOH A 736 2.15 REMARK 500 O HOH A 738 O HOH A 742 2.16 REMARK 500 O HOH A 703 O HOH A 752 2.16 REMARK 500 NE ARG A 165 O HOH A 503 2.17 REMARK 500 O HOH A 589 O HOH A 651 2.18 REMARK 500 OD1 ASP A 13 O HOH A 504 2.18 REMARK 500 O HOH A 701 O HOH A 745 2.18 REMARK 500 O HOH A 518 O HOH A 679 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 626 O HOH A 660 4556 1.94 REMARK 500 O HOH A 613 O HOH A 693 7555 2.09 REMARK 500 O HOH A 675 O HOH A 740 7555 2.10 REMARK 500 O HOH A 662 O HOH A 675 7545 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 61 67.17 -161.68 REMARK 500 ASP A 62 -179.91 -59.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 755 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 756 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 757 DISTANCE = 6.85 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XT2 RELATED DB: PDB DBREF1 5XSO A 1 205 UNP A0A0M9B7W0_BRAJP DBREF2 5XSO A A0A0M9B7W0 1 205 SEQADV 5XSO GLY A -9 UNP A0A0M9B7W EXPRESSION TAG SEQADV 5XSO PRO A -8 UNP A0A0M9B7W EXPRESSION TAG SEQADV 5XSO GLY A -7 UNP A0A0M9B7W EXPRESSION TAG SEQADV 5XSO TYR A -6 UNP A0A0M9B7W EXPRESSION TAG SEQADV 5XSO GLN A -5 UNP A0A0M9B7W EXPRESSION TAG SEQADV 5XSO ASP A -4 UNP A0A0M9B7W EXPRESSION TAG SEQADV 5XSO PRO A -3 UNP A0A0M9B7W EXPRESSION TAG SEQADV 5XSO ASN A -2 UNP A0A0M9B7W EXPRESSION TAG SEQADV 5XSO SER A -1 UNP A0A0M9B7W EXPRESSION TAG SEQADV 5XSO VAL A 0 UNP A0A0M9B7W EXPRESSION TAG SEQRES 1 A 215 GLY PRO GLY TYR GLN ASP PRO ASN SER VAL MET THR THR SEQRES 2 A 215 LYS GLY HIS ILE TYR VAL ILE ASP ASP ASP ALA ALA MET SEQRES 3 A 215 ARG ASP SER LEU ASN PHE LEU LEU ASP SER ALA GLY PHE SEQRES 4 A 215 GLY VAL THR LEU PHE ASP ASP ALA GLN ALA PHE LEU ASP SEQRES 5 A 215 ALA LEU PRO GLY LEU SER PHE GLY CYS VAL VAL SER ASP SEQRES 6 A 215 VAL ARG MET PRO GLY LEU ASP GLY ILE GLU LEU LEU LYS SEQRES 7 A 215 ARG MET LYS ALA GLN GLN SER PRO PHE PRO ILE LEU ILE SEQRES 8 A 215 MET THR GLY HIS GLY ASP VAL PRO LEU ALA VAL GLU ALA SEQRES 9 A 215 MET LYS LEU GLY ALA VAL ASP PHE LEU GLU LYS PRO PHE SEQRES 10 A 215 GLU ASP ASP ARG LEU THR ALA MET ILE GLU SER ALA ILE SEQRES 11 A 215 ARG GLN ALA GLU PRO ALA ALA LYS SER GLU ALA VAL ALA SEQRES 12 A 215 GLN ASP ILE ALA ALA ARG VAL ALA SER LEU SER PRO ARG SEQRES 13 A 215 GLU ARG GLN VAL MET GLU GLY LEU ILE ALA GLY LEU SER SEQRES 14 A 215 ASN LYS LEU ILE ALA ARG GLU TYR ASP ILE SER PRO ARG SEQRES 15 A 215 THR ILE GLU VAL TYR ARG ALA ASN VAL MET THR LYS MET SEQRES 16 A 215 GLN ALA ASN SER LEU SER GLU LEU VAL ARG LEU ALA MET SEQRES 17 A 215 ARG ALA GLY MET LEU ASN ASP HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET FMT A 405 3 HET FMT A 406 3 HET FMT A 407 3 HET FMT A 408 3 HET FMT A 409 3 HET FMT A 410 3 HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 4(C3 H8 O3) FORMUL 6 FMT 6(C H2 O2) FORMUL 12 HOH *257(H2 O) HELIX 1 AA1 ASP A 13 ALA A 27 1 15 HELIX 2 AA2 ASP A 36 LEU A 44 1 9 HELIX 3 AA3 PRO A 45 LEU A 47 5 3 HELIX 4 AA4 ASP A 62 GLN A 73 1 12 HELIX 5 AA5 GLY A 84 GLY A 86 5 3 HELIX 6 AA6 ASP A 87 LEU A 97 1 11 HELIX 7 AA7 GLU A 108 SER A 129 1 22 HELIX 8 AA8 SER A 129 LEU A 143 1 15 HELIX 9 AA9 SER A 144 GLY A 157 1 14 HELIX 10 AB1 SER A 159 ASP A 168 1 10 HELIX 11 AB2 SER A 170 ARG A 172 5 3 HELIX 12 AB3 THR A 173 GLN A 186 1 14 HELIX 13 AB4 SER A 189 ALA A 200 1 12 SHEET 1 AA1 5 GLY A 30 PHE A 34 0 SHEET 2 AA1 5 HIS A 6 ILE A 10 1 N ILE A 7 O GLY A 30 SHEET 3 AA1 5 CYS A 51 ASP A 55 1 O CYS A 51 N TYR A 8 SHEET 4 AA1 5 ILE A 79 THR A 83 1 O LEU A 80 N VAL A 52 SHEET 5 AA1 5 ASP A 101 GLU A 104 1 O LEU A 103 N ILE A 81 CISPEP 1 LYS A 105 PRO A 106 0 -6.88 SITE 1 AC1 8 SER A 19 LEU A 23 PRO A 106 PHE A 107 SITE 2 AC1 8 HOH A 510 HOH A 527 HOH A 619 HOH A 655 SITE 1 AC2 9 GLU A 175 MET A 182 THR A 183 GLN A 186 SITE 2 AC2 9 ALA A 187 ASN A 188 HOH A 515 HOH A 585 SITE 3 AC2 9 HOH A 610 SITE 1 AC3 9 ARG A 17 ASP A 18 ASN A 21 ASP A 168 SITE 2 AC3 9 SER A 170 FMT A 409 HOH A 562 HOH A 617 SITE 3 AC3 9 HOH A 642 SITE 1 AC4 7 GLY A 84 HIS A 85 LYS A 105 GLY A 157 SITE 2 AC4 7 SER A 159 LEU A 162 HOH A 590 SITE 1 AC5 2 ASP A 12 HOH A 524 SITE 1 AC6 6 PRO A 106 PHE A 107 GLU A 108 ARG A 165 SITE 2 AC6 6 HOH A 566 HOH A 631 SITE 1 AC7 4 ALA A 15 ASP A 18 ARG A 172 HOH A 507 SITE 1 AC8 2 LYS A 184 HOH A 612 SITE 1 AC9 4 LEU A 33 ASP A 35 ASP A 168 GOL A 403 SITE 1 AD1 3 ARG A 111 ALA A 114 HOH A 546 CRYST1 70.849 79.335 120.121 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014115 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012605 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008325 0.00000