HEADER HYDROLASE 15-JUN-17 5XSP TITLE THE CATALYTIC DOMAIN OF GDPP WITH 5'-PAPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHODIESTERASE ACTING ON CYCLIC DINUCLEOTIDES; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 322-661; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: CDND, BN1321_430104; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PHOSPHODIESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.WANG,L.GU REVDAT 2 22-NOV-23 5XSP 1 LINK REVDAT 1 31-JAN-18 5XSP 0 JRNL AUTH F.WANG,Q.HE,K.SU,T.WEI,S.XU,L.GU JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF THE CATALYTIC JRNL TITL 2 DOMAINS OF GDPP REVEALS A UNIFIED HYDROLYSIS MECHANISM FOR JRNL TITL 3 THE DHH/DHHA1 PHOSPHODIESTERASE JRNL REF BIOCHEM. J. V. 475 191 2018 JRNL REFN ESSN 1470-8728 JRNL PMID 29203646 JRNL DOI 10.1042/BCJ20170739 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 43529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2177 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1377 - 5.4021 0.99 2876 142 0.1867 0.2321 REMARK 3 2 5.4021 - 4.2897 1.00 2757 160 0.1568 0.1920 REMARK 3 3 4.2897 - 3.7480 0.99 2731 148 0.1598 0.1946 REMARK 3 4 3.7480 - 3.4055 0.99 2684 131 0.1922 0.2466 REMARK 3 5 3.4055 - 3.1616 0.99 2687 142 0.2110 0.2280 REMARK 3 6 3.1616 - 2.9752 0.98 2645 149 0.2134 0.2604 REMARK 3 7 2.9752 - 2.8263 0.98 2654 135 0.2192 0.2786 REMARK 3 8 2.8263 - 2.7033 0.97 2599 135 0.2227 0.3030 REMARK 3 9 2.7033 - 2.5992 0.97 2569 144 0.2211 0.2875 REMARK 3 10 2.5992 - 2.5096 0.96 2585 143 0.2148 0.2577 REMARK 3 11 2.5096 - 2.4311 0.95 2550 133 0.2190 0.3201 REMARK 3 12 2.4311 - 2.3616 0.94 2499 132 0.2191 0.2753 REMARK 3 13 2.3616 - 2.2995 0.89 2391 125 0.2336 0.2726 REMARK 3 14 2.2995 - 2.2434 0.93 2515 114 0.2462 0.2959 REMARK 3 15 2.2434 - 2.1924 0.91 2404 130 0.2268 0.2908 REMARK 3 16 2.1924 - 2.1457 0.82 2206 114 0.2387 0.3017 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 34.52 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.55910 REMARK 3 B22 (A**2) : -5.68540 REMARK 3 B33 (A**2) : 2.12630 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5339 REMARK 3 ANGLE : 1.010 7256 REMARK 3 CHIRALITY : 0.064 873 REMARK 3 PLANARITY : 0.006 924 REMARK 3 DIHEDRAL : 13.021 2000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XSP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300004107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45475 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 38.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5XSI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG8000, 0.1 M IMIDAZOLE PH REMARK 280 7.5, 0.2 M CALCIUM ACETATE., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.30950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.68400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.63150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.68400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.30950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.63150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 313 REMARK 465 SER A 314 REMARK 465 MET A 315 REMARK 465 ARG A 316 REMARK 465 THR A 317 REMARK 465 SER A 650 REMARK 465 ARG A 651 REMARK 465 SER A 652 REMARK 465 GLU A 653 REMARK 465 ASP A 654 REMARK 465 ALA A 655 REMARK 465 GLY B 313 REMARK 465 SER B 314 REMARK 465 MET B 315 REMARK 465 ARG B 316 REMARK 465 THR B 317 REMARK 465 ARG B 318 REMARK 465 SER B 650 REMARK 465 ARG B 651 REMARK 465 SER B 652 REMARK 465 GLU B 653 REMARK 465 ASP B 654 REMARK 465 ALA B 655 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 508 O HOH B 801 1.95 REMARK 500 O HOH B 836 O HOH B 923 1.97 REMARK 500 OE2 GLU A 474 O HOH A 801 2.02 REMARK 500 O HOH A 893 O HOH A 946 2.12 REMARK 500 O HOH A 906 O HOH A 940 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 392 -159.85 -136.39 REMARK 500 GLU B 447 -85.79 -61.30 REMARK 500 GLN B 480 74.82 -109.26 REMARK 500 SER B 606 -60.88 -93.82 REMARK 500 ASN B 624 108.72 -164.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 702 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 343 NE2 REMARK 620 2 ASP A 347 OD2 94.4 REMARK 620 3 ASP A 418 OD2 85.2 132.0 REMARK 620 4 HOH A 821 O 162.2 72.0 95.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 349 OD2 REMARK 620 2 ASP A 418 OD1 78.8 REMARK 620 3 HIS A 442 NE2 97.4 83.3 REMARK 620 4 ASP A 497 OD2 76.4 151.6 86.3 REMARK 620 5 HOH A 821 O 116.2 124.3 138.8 79.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 702 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 343 NE2 REMARK 620 2 ASP B 347 OD2 94.1 REMARK 620 3 ASP B 418 OD2 86.1 131.8 REMARK 620 4 HOH B 845 O 160.0 88.0 77.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 349 OD2 REMARK 620 2 ASP B 418 OD1 82.6 REMARK 620 3 HIS B 442 NE2 102.3 81.7 REMARK 620 4 ASP B 497 OD2 83.2 159.9 87.5 REMARK 620 5 HOH B 845 O 113.4 118.3 140.4 80.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide A A 703 and A A REMARK 800 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide A B 703 and A B REMARK 800 704 DBREF1 5XSP A 316 655 UNP A0A0U1MUE2_STAAU DBREF2 5XSP A A0A0U1MUE2 322 661 DBREF1 5XSP B 316 655 UNP A0A0U1MUE2_STAAU DBREF2 5XSP B A0A0U1MUE2 322 661 SEQADV 5XSP GLY A 313 UNP A0A0U1MUE EXPRESSION TAG SEQADV 5XSP SER A 314 UNP A0A0U1MUE EXPRESSION TAG SEQADV 5XSP MET A 315 UNP A0A0U1MUE EXPRESSION TAG SEQADV 5XSP GLY B 313 UNP A0A0U1MUE EXPRESSION TAG SEQADV 5XSP SER B 314 UNP A0A0U1MUE EXPRESSION TAG SEQADV 5XSP MET B 315 UNP A0A0U1MUE EXPRESSION TAG SEQRES 1 A 343 GLY SER MET ARG THR ARG VAL ARG ALA ARG VAL ILE SER SEQRES 2 A 343 HIS ALA LEU LYS ASP ILE LEU ALA GLU GLY ASP LYS VAL SEQRES 3 A 343 ILE ILE MET GLY HIS LYS ARG PRO ASP LEU ASP ALA ILE SEQRES 4 A 343 GLY ALA ALA ILE GLY VAL SER ARG PHE ALA MET MET ASN SEQRES 5 A 343 ASN LEU GLU ALA TYR ILE VAL LEU ASN GLU THR ASP ILE SEQRES 6 A 343 ASP PRO THR LEU ARG ARG VAL MET ASN GLU ILE ASP LYS SEQRES 7 A 343 LYS PRO GLU LEU ARG GLU ARG PHE ILE THR SER ASP ASP SEQRES 8 A 343 ALA TRP ASP MET MET THR SER LYS THR THR VAL VAL ILE SEQRES 9 A 343 VAL ASP THR HIS LYS PRO GLU LEU VAL LEU ASP GLU ASN SEQRES 10 A 343 VAL LEU ASN LYS ALA ASN ARG LYS VAL VAL ILE ASP HIS SEQRES 11 A 343 HIS ARG ARG GLY GLU SER PHE ILE SER ASN PRO LEU LEU SEQRES 12 A 343 ILE TYR MET GLU PRO TYR ALA SER SER THR ALA GLU LEU SEQRES 13 A 343 VAL THR GLU LEU LEU GLU TYR GLN PRO THR GLU GLN ARG SEQRES 14 A 343 LEU THR ARG LEU GLU SER THR VAL MET TYR ALA GLY ILE SEQRES 15 A 343 ILE VAL ASP THR ARG ASN PHE THR LEU ARG THR GLY SER SEQRES 16 A 343 ARG THR PHE ASP ALA ALA SER TYR LEU ARG ALA HIS GLY SEQRES 17 A 343 ALA ASP THR ILE LEU THR GLN HIS PHE LEU LYS ASP ASP SEQRES 18 A 343 VAL ASP THR TYR ILE ASN ARG SER GLU LEU ILE ARG THR SEQRES 19 A 343 VAL LYS VAL GLU ASP ASN GLY ILE ALA ILE ALA HIS GLY SEQRES 20 A 343 SER ASP ASP LYS ILE TYR HIS PRO VAL THR VAL ALA GLN SEQRES 21 A 343 ALA ALA ASP GLU LEU LEU SER LEU GLU GLY ILE GLU ALA SEQRES 22 A 343 SER TYR VAL VAL ALA ARG ARG GLU ASP ASN LEU ILE GLY SEQRES 23 A 343 ILE SER ALA ARG SER LEU GLY SER VAL ASN VAL GLN LEU SEQRES 24 A 343 THR MET GLU ALA LEU GLY GLY GLY GLY HIS LEU THR ASN SEQRES 25 A 343 ALA ALA THR GLN LEU LYS GLY VAL THR VAL GLU GLU ALA SEQRES 26 A 343 ILE ALA GLN LEU GLN GLN ALA ILE THR GLU GLN LEU SER SEQRES 27 A 343 ARG SER GLU ASP ALA SEQRES 1 B 343 GLY SER MET ARG THR ARG VAL ARG ALA ARG VAL ILE SER SEQRES 2 B 343 HIS ALA LEU LYS ASP ILE LEU ALA GLU GLY ASP LYS VAL SEQRES 3 B 343 ILE ILE MET GLY HIS LYS ARG PRO ASP LEU ASP ALA ILE SEQRES 4 B 343 GLY ALA ALA ILE GLY VAL SER ARG PHE ALA MET MET ASN SEQRES 5 B 343 ASN LEU GLU ALA TYR ILE VAL LEU ASN GLU THR ASP ILE SEQRES 6 B 343 ASP PRO THR LEU ARG ARG VAL MET ASN GLU ILE ASP LYS SEQRES 7 B 343 LYS PRO GLU LEU ARG GLU ARG PHE ILE THR SER ASP ASP SEQRES 8 B 343 ALA TRP ASP MET MET THR SER LYS THR THR VAL VAL ILE SEQRES 9 B 343 VAL ASP THR HIS LYS PRO GLU LEU VAL LEU ASP GLU ASN SEQRES 10 B 343 VAL LEU ASN LYS ALA ASN ARG LYS VAL VAL ILE ASP HIS SEQRES 11 B 343 HIS ARG ARG GLY GLU SER PHE ILE SER ASN PRO LEU LEU SEQRES 12 B 343 ILE TYR MET GLU PRO TYR ALA SER SER THR ALA GLU LEU SEQRES 13 B 343 VAL THR GLU LEU LEU GLU TYR GLN PRO THR GLU GLN ARG SEQRES 14 B 343 LEU THR ARG LEU GLU SER THR VAL MET TYR ALA GLY ILE SEQRES 15 B 343 ILE VAL ASP THR ARG ASN PHE THR LEU ARG THR GLY SER SEQRES 16 B 343 ARG THR PHE ASP ALA ALA SER TYR LEU ARG ALA HIS GLY SEQRES 17 B 343 ALA ASP THR ILE LEU THR GLN HIS PHE LEU LYS ASP ASP SEQRES 18 B 343 VAL ASP THR TYR ILE ASN ARG SER GLU LEU ILE ARG THR SEQRES 19 B 343 VAL LYS VAL GLU ASP ASN GLY ILE ALA ILE ALA HIS GLY SEQRES 20 B 343 SER ASP ASP LYS ILE TYR HIS PRO VAL THR VAL ALA GLN SEQRES 21 B 343 ALA ALA ASP GLU LEU LEU SER LEU GLU GLY ILE GLU ALA SEQRES 22 B 343 SER TYR VAL VAL ALA ARG ARG GLU ASP ASN LEU ILE GLY SEQRES 23 B 343 ILE SER ALA ARG SER LEU GLY SER VAL ASN VAL GLN LEU SEQRES 24 B 343 THR MET GLU ALA LEU GLY GLY GLY GLY HIS LEU THR ASN SEQRES 25 B 343 ALA ALA THR GLN LEU LYS GLY VAL THR VAL GLU GLU ALA SEQRES 26 B 343 ILE ALA GLN LEU GLN GLN ALA ILE THR GLU GLN LEU SER SEQRES 27 B 343 ARG SER GLU ASP ALA HET MN A 701 1 HET MN A 702 1 HET A A 703 23 HET A A 704 22 HET MN B 701 1 HET MN B 702 1 HET A B 703 23 HET A B 704 22 HETNAM MN MANGANESE (II) ION HETNAM A ADENOSINE-5'-MONOPHOSPHATE FORMUL 3 MN 4(MN 2+) FORMUL 5 A 4(C10 H14 N5 O7 P) FORMUL 11 HOH *316(H2 O) HELIX 1 AA1 ARG A 318 GLY A 335 1 18 HELIX 2 AA2 ASP A 347 ASN A 364 1 18 HELIX 3 AA3 ASN A 373 ILE A 377 5 5 HELIX 4 AA4 ASP A 378 LYS A 391 1 14 HELIX 5 AA5 GLU A 393 GLU A 396 5 4 HELIX 6 AA6 THR A 400 MET A 408 1 9 HELIX 7 AA7 LYS A 421 VAL A 425 5 5 HELIX 8 AA8 ASP A 427 ALA A 434 1 8 HELIX 9 AA9 SER A 464 GLU A 474 1 11 HELIX 10 AB1 THR A 483 ARG A 499 1 17 HELIX 11 AB2 GLY A 506 HIS A 519 1 14 HELIX 12 AB3 ASP A 522 LEU A 530 1 9 HELIX 13 AB4 ASP A 533 ARG A 545 1 13 HELIX 14 AB5 HIS A 566 LEU A 578 1 13 HELIX 15 AB6 ASN A 608 ALA A 615 1 8 HELIX 16 AB7 THR A 633 LEU A 649 1 17 HELIX 17 AB8 ARG B 320 GLY B 335 1 16 HELIX 18 AB9 ASP B 347 ASN B 364 1 18 HELIX 19 AC1 ASN B 373 ILE B 377 5 5 HELIX 20 AC2 ASP B 378 ASP B 389 1 12 HELIX 21 AC3 LYS B 391 GLU B 396 1 6 HELIX 22 AC4 THR B 400 MET B 408 1 9 HELIX 23 AC5 LYS B 421 VAL B 425 5 5 HELIX 24 AC6 ASP B 427 ALA B 434 1 8 HELIX 25 AC7 SER B 464 GLU B 474 1 11 HELIX 26 AC8 THR B 483 ARG B 499 1 17 HELIX 27 AC9 GLY B 506 HIS B 519 1 14 HELIX 28 AD1 ASP B 522 LEU B 530 1 9 HELIX 29 AD2 ASP B 533 ARG B 545 1 13 HELIX 30 AD3 HIS B 566 LEU B 578 1 13 HELIX 31 AD4 ASN B 608 ALA B 615 1 8 HELIX 32 AD5 THR B 633 LEU B 649 1 17 SHEET 1 AA1 6 PHE A 398 ILE A 399 0 SHEET 2 AA1 6 ALA A 368 VAL A 371 1 N ILE A 370 O ILE A 399 SHEET 3 AA1 6 LYS A 337 MET A 341 1 N ILE A 340 O VAL A 371 SHEET 4 AA1 6 THR A 412 VAL A 417 1 O THR A 413 N ILE A 339 SHEET 5 AA1 6 ARG A 436 ASP A 441 1 O VAL A 438 N ILE A 416 SHEET 6 AA1 6 LEU A 455 MET A 458 1 O TYR A 457 N VAL A 439 SHEET 1 AA2 6 LYS A 548 VAL A 549 0 SHEET 2 AA2 6 ILE A 554 HIS A 558 -1 O ILE A 556 N LYS A 548 SHEET 3 AA2 6 ALA A 585 GLU A 593 1 O ALA A 585 N ALA A 555 SHEET 4 AA2 6 LEU A 596 SER A 603 -1 O LEU A 596 N ARG A 592 SHEET 5 AA2 6 ASN A 624 LYS A 630 -1 O ALA A 625 N ALA A 601 SHEET 6 AA2 6 GLY A 619 HIS A 621 -1 N HIS A 621 O ASN A 624 SHEET 1 AA3 6 PHE B 398 ILE B 399 0 SHEET 2 AA3 6 ALA B 368 VAL B 371 1 N ILE B 370 O ILE B 399 SHEET 3 AA3 6 LYS B 337 MET B 341 1 N ILE B 340 O TYR B 369 SHEET 4 AA3 6 THR B 412 VAL B 417 1 O VAL B 415 N ILE B 339 SHEET 5 AA3 6 ARG B 436 ASP B 441 1 O VAL B 438 N ILE B 416 SHEET 6 AA3 6 LEU B 455 MET B 458 1 O TYR B 457 N VAL B 439 SHEET 1 AA4 6 LYS B 548 VAL B 549 0 SHEET 2 AA4 6 ILE B 554 HIS B 558 -1 O ILE B 556 N LYS B 548 SHEET 3 AA4 6 ALA B 585 GLU B 593 1 O VAL B 589 N ALA B 557 SHEET 4 AA4 6 LEU B 596 SER B 603 -1 O GLY B 598 N ALA B 590 SHEET 5 AA4 6 ASN B 624 LYS B 630 -1 O LEU B 629 N ILE B 597 SHEET 6 AA4 6 GLY B 619 HIS B 621 -1 N HIS B 621 O ASN B 624 LINK O3' A A 703 P A A 704 1555 1555 1.61 LINK O3' A B 703 P A B 704 1555 1555 1.61 LINK NE2 HIS A 343 MN MN A 702 1555 1555 2.57 LINK OD2 ASP A 347 MN MN A 702 1555 1555 2.51 LINK OD2 ASP A 349 MN MN A 701 1555 1555 2.26 LINK OD1 ASP A 418 MN MN A 701 1555 1555 2.39 LINK OD2 ASP A 418 MN MN A 702 1555 1555 2.37 LINK NE2 HIS A 442 MN MN A 701 1555 1555 2.53 LINK OD2 ASP A 497 MN MN A 701 1555 1555 2.31 LINK MN MN A 701 O HOH A 821 1555 1555 2.45 LINK MN MN A 702 O HOH A 821 1555 1555 2.37 LINK NE2 HIS B 343 MN MN B 702 1555 1555 2.55 LINK OD2 ASP B 347 MN MN B 702 1555 1555 2.52 LINK OD2 ASP B 349 MN MN B 701 1555 1555 2.29 LINK OD1 ASP B 418 MN MN B 701 1555 1555 2.38 LINK OD2 ASP B 418 MN MN B 702 1555 1555 2.47 LINK NE2 HIS B 442 MN MN B 701 1555 1555 2.57 LINK OD2 ASP B 497 MN MN B 701 1555 1555 2.36 LINK MN MN B 701 O HOH B 845 1555 1555 1.93 LINK MN MN B 702 O HOH B 845 1555 1555 2.16 SITE 1 AC1 7 ASP A 349 ASP A 418 HIS A 442 ASP A 497 SITE 2 AC1 7 MN A 702 HOH A 821 HOH A 966 SITE 1 AC2 5 HIS A 343 ASP A 347 ASP A 418 MN A 701 SITE 2 AC2 5 HOH A 821 SITE 1 AC3 6 ASP B 349 ASP B 418 HIS B 442 ASP B 497 SITE 2 AC3 6 MN B 702 HOH B 845 SITE 1 AC4 5 HIS B 343 ASP B 347 ASP B 418 MN B 701 SITE 2 AC4 5 HOH B 845 SITE 1 AC5 15 ARG A 499 ALA A 571 GLN A 572 SER A 600 SITE 2 AC5 15 ARG A 602 GLY A 619 GLY A 620 HIS A 621 SITE 3 AC5 15 ASN A 624 ALA A 625 ALA A 626 GLN A 628 SITE 4 AC5 15 HOH A 836 HOH A 907 HOH A 928 SITE 1 AC6 15 VAL B 568 ALA B 571 GLN B 572 SER B 600 SITE 2 AC6 15 ARG B 602 GLY B 618 GLY B 619 GLY B 620 SITE 3 AC6 15 HIS B 621 ASN B 624 ALA B 625 ALA B 626 SITE 4 AC6 15 GLN B 628 HOH B 827 HOH B 891 CRYST1 54.619 117.263 127.368 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018309 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008528 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007851 0.00000