HEADER TRANSFERASE 23-JUN-17 5XUF TITLE CRYSTAL STRUCTURE OF TRANSKETOLASE IN COMPLEX WITH HYDROXYLATED TPP TITLE 2 FROM PICHIA STIPITIS, CRYSTAL I COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSKETOLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TK; COMPND 5 EC: 2.2.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHEFFERSOMYCES STIPITIS CBS 6054; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 322104; SOURCE 5 STRAIN: CBS 6054; SOURCE 6 GENE: TKT, TKT1, PICST_67105; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS TRANSKETOLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.L.LI,N.S.HSU,Y.L.WANG REVDAT 2 22-NOV-23 5XUF 1 LINK REVDAT 1 25-APR-18 5XUF 0 JRNL AUTH N.S.HSU,Y.L.WANG,K.H.LIN,C.F.CHANG,S.Y.LYU,L.J.HSU,Y.C.LIU, JRNL AUTH 2 C.Y.CHANG,C.J.WU,T.L.LI JRNL TITL THE MESOMERIC EFFECT OF THIAZOLIUM ON NON-KEKULE DIRADICALS JRNL TITL 2 IN PICHIA STIPITIS TRANSKETOLASE. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 57 1802 2018 JRNL REFN ESSN 1521-3773 JRNL PMID 29243887 JRNL DOI 10.1002/ANIE.201709799 REMARK 2 REMARK 2 RESOLUTION. 0.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 722274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.129 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.137 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 36241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.3603 - 2.7342 0.97 23098 1184 0.1549 0.1626 REMARK 3 2 2.7342 - 2.1705 1.00 23103 1281 0.1465 0.1536 REMARK 3 3 2.1705 - 1.8962 1.00 23040 1341 0.1360 0.1434 REMARK 3 4 1.8962 - 1.7229 1.00 23000 1281 0.1342 0.1405 REMARK 3 5 1.7229 - 1.5994 1.00 23109 1154 0.1166 0.1195 REMARK 3 6 1.5994 - 1.5051 1.00 23074 1146 0.1061 0.1151 REMARK 3 7 1.5051 - 1.4298 1.00 22901 1301 0.1043 0.1182 REMARK 3 8 1.4298 - 1.3675 1.00 22886 1292 0.1017 0.1098 REMARK 3 9 1.3675 - 1.3149 1.00 22957 1225 0.0992 0.1044 REMARK 3 10 1.3149 - 1.2695 1.00 22859 1261 0.0977 0.1062 REMARK 3 11 1.2695 - 1.2298 1.00 22871 1307 0.0984 0.1093 REMARK 3 12 1.2298 - 1.1947 1.00 22878 1188 0.0960 0.1044 REMARK 3 13 1.1947 - 1.1632 1.00 22885 1219 0.0941 0.1043 REMARK 3 14 1.1632 - 1.1348 1.00 22825 1278 0.0944 0.0988 REMARK 3 15 1.1348 - 1.1090 1.00 22894 1233 0.0976 0.1088 REMARK 3 16 1.1090 - 1.0854 1.00 22902 1192 0.1050 0.1142 REMARK 3 17 1.0854 - 1.0637 1.00 22830 1225 0.1045 0.1156 REMARK 3 18 1.0637 - 1.0436 1.00 22779 1237 0.1066 0.1144 REMARK 3 19 1.0436 - 1.0250 1.00 22976 1147 0.1123 0.1227 REMARK 3 20 1.0250 - 1.0076 1.00 22913 1158 0.1164 0.1330 REMARK 3 21 1.0076 - 0.9914 1.00 22818 1187 0.1265 0.1386 REMARK 3 22 0.9914 - 0.9761 1.00 22871 1143 0.1358 0.1480 REMARK 3 23 0.9761 - 0.9618 1.00 22871 1188 0.1495 0.1558 REMARK 3 24 0.9618 - 0.9482 1.00 22906 1143 0.1577 0.1742 REMARK 3 25 0.9482 - 0.9354 1.00 22801 1186 0.1685 0.1793 REMARK 3 26 0.9354 - 0.9233 1.00 22843 1225 0.1803 0.1901 REMARK 3 27 0.9233 - 0.9117 1.00 22780 1200 0.1950 0.2135 REMARK 3 28 0.9117 - 0.9007 1.00 22874 1145 0.2111 0.2212 REMARK 3 29 0.9007 - 0.8903 1.00 22930 1118 0.2241 0.2389 REMARK 3 30 0.8903 - 0.8803 0.94 21559 1056 0.2364 0.2381 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.060 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5555 REMARK 3 ANGLE : 1.301 7610 REMARK 3 CHIRALITY : 0.216 854 REMARK 3 PLANARITY : 0.010 996 REMARK 3 DIHEDRAL : 6.630 3160 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XUF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300004182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 722426 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.880 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.88000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5HYV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 0.1M NACL, PEG 400, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.54950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.54950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.60250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 92.58700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.60250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 92.58700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.54950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.60250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 92.58700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.54950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.60250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 92.58700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -49.54950 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 840 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 855 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1260 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1620 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1631 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1686 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1744 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1829 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1859 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1101 O HOH A 1338 1.88 REMARK 500 O HOH A 1338 O HOH A 1446 1.93 REMARK 500 O HOH A 828 O HOH A 1015 2.00 REMARK 500 O HOH A 1596 O HOH A 1745 2.01 REMARK 500 O HOH A 1192 O HOH A 1399 2.01 REMARK 500 O HOH A 1362 O HOH A 1407 2.03 REMARK 500 O HOH A 805 O HOH A 1161 2.03 REMARK 500 O HOH A 1254 O HOH A 1792 2.04 REMARK 500 O HOH A 1233 O HOH A 1715 2.06 REMARK 500 O HOH A 923 O HOH A 1157 2.07 REMARK 500 O HOH A 1185 O HOH A 1481 2.07 REMARK 500 O HOH A 912 O HOH A 1482 2.08 REMARK 500 O HOH A 1535 O HOH A 1841 2.09 REMARK 500 O HOH A 861 O HOH A 1386 2.09 REMARK 500 O HOH A 1232 O HOH A 1262 2.10 REMARK 500 O HOH A 1411 O HOH A 1589 2.10 REMARK 500 O HOH A 1491 O HOH A 1690 2.10 REMARK 500 O HOH A 825 O HOH A 1369 2.11 REMARK 500 O HOH A 1406 O HOH A 1530 2.11 REMARK 500 O HOH A 1240 O HOH A 1596 2.11 REMARK 500 O HOH A 1700 O HOH A 1714 2.12 REMARK 500 O HOH A 1507 O HOH A 1820 2.13 REMARK 500 O HOH A 1556 O HOH A 1751 2.14 REMARK 500 O HOH A 1411 O HOH A 1475 2.15 REMARK 500 O HOH A 1645 O HOH A 1675 2.15 REMARK 500 O HOH A 1246 O HOH A 1554 2.16 REMARK 500 O HOH A 1574 O HOH A 1803 2.17 REMARK 500 O HOH A 845 O HOH A 1656 2.17 REMARK 500 O HOH A 1621 O HOH A 1811 2.18 REMARK 500 O HOH A 1293 O HOH A 1494 2.19 REMARK 500 O HOH A 1219 O HOH A 1550 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1532 O HOH A 1651 6554 2.15 REMARK 500 O HOH A 1300 O HOH A 1498 4555 2.18 REMARK 500 O HOH A 1555 O HOH A 1718 8555 2.18 REMARK 500 O HOH A 1266 O HOH A 1531 3554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 451 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 146 26.43 -149.55 REMARK 500 ALA A 196 -7.14 -154.51 REMARK 500 ILE A 481 -54.53 -128.87 REMARK 500 LYS A 551 40.47 -109.00 REMARK 500 VAL A 614 47.48 -81.45 REMARK 500 VAL A 614 48.26 -82.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 91 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1853 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1854 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1855 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1856 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1857 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A1858 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A1859 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A1860 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A1861 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A1862 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A1863 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A1864 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A1865 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A1866 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A1867 DISTANCE = 6.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 155 OD2 REMARK 620 2 ASN A 185 OD1 86.7 REMARK 620 3 ILE A 187 O 97.5 88.0 REMARK 620 4 8FL A 704 O1A 98.4 174.1 94.1 REMARK 620 5 8FL A 704 O3B 165.0 90.1 97.1 84.2 REMARK 620 6 HOH A 962 O 83.5 90.2 177.9 87.6 81.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8FL A 704 DBREF 5XUF A 1 677 UNP P34736 TKT_PICST 1 677 SEQADV 5XUF MET A -19 UNP P34736 EXPRESSION TAG SEQADV 5XUF GLY A -18 UNP P34736 EXPRESSION TAG SEQADV 5XUF SER A -17 UNP P34736 EXPRESSION TAG SEQADV 5XUF SER A -16 UNP P34736 EXPRESSION TAG SEQADV 5XUF HIS A -15 UNP P34736 EXPRESSION TAG SEQADV 5XUF HIS A -14 UNP P34736 EXPRESSION TAG SEQADV 5XUF HIS A -13 UNP P34736 EXPRESSION TAG SEQADV 5XUF HIS A -12 UNP P34736 EXPRESSION TAG SEQADV 5XUF HIS A -11 UNP P34736 EXPRESSION TAG SEQADV 5XUF HIS A -10 UNP P34736 EXPRESSION TAG SEQADV 5XUF SER A -9 UNP P34736 EXPRESSION TAG SEQADV 5XUF SER A -8 UNP P34736 EXPRESSION TAG SEQADV 5XUF GLY A -7 UNP P34736 EXPRESSION TAG SEQADV 5XUF LEU A -6 UNP P34736 EXPRESSION TAG SEQADV 5XUF VAL A -5 UNP P34736 EXPRESSION TAG SEQADV 5XUF PRO A -4 UNP P34736 EXPRESSION TAG SEQADV 5XUF ARG A -3 UNP P34736 EXPRESSION TAG SEQADV 5XUF GLY A -2 UNP P34736 EXPRESSION TAG SEQADV 5XUF SER A -1 UNP P34736 EXPRESSION TAG SEQADV 5XUF HIS A 0 UNP P34736 EXPRESSION TAG SEQRES 1 A 697 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 697 LEU VAL PRO ARG GLY SER HIS MET SER SER VAL ASP GLN SEQRES 3 A 697 LYS ALA ILE SER THR ILE ARG LEU LEU ALA VAL ASP ALA SEQRES 4 A 697 VAL ALA ALA ALA ASN SER GLY HIS PRO GLY ALA PRO LEU SEQRES 5 A 697 GLY LEU ALA PRO ALA ALA HIS ALA VAL PHE LYS LYS MET SEQRES 6 A 697 ARG PHE ASN PRO LYS ASP THR LYS TRP ILE ASN ARG ASP SEQRES 7 A 697 ARG PHE VAL LEU SER ASN GLY HIS ALA CYS ALA LEU LEU SEQRES 8 A 697 TYR SER MET LEU VAL LEU TYR GLY TYR ASP LEU THR VAL SEQRES 9 A 697 GLU ASP LEU LYS LYS PHE ARG GLN LEU GLY SER LYS THR SEQRES 10 A 697 PRO GLY HIS PRO GLU ASN THR ASP VAL PRO GLY ALA GLU SEQRES 11 A 697 VAL THR THR GLY PRO LEU GLY GLN GLY ILE CYS ASN GLY SEQRES 12 A 697 VAL GLY ILE ALA LEU ALA GLN ALA GLN PHE ALA ALA THR SEQRES 13 A 697 TYR ASN LYS PRO ASP PHE PRO ILE SER ASP SER TYR THR SEQRES 14 A 697 TYR VAL PHE LEU GLY ASP GLY CYS LEU MET GLU GLY VAL SEQRES 15 A 697 SER SER GLU ALA SER SER LEU ALA GLY HIS LEU GLN LEU SEQRES 16 A 697 GLY ASN LEU ILE ALA PHE TRP ASP ASP ASN LYS ILE SER SEQRES 17 A 697 ILE ASP GLY SER THR GLU VAL ALA PHE THR GLU ASP VAL SEQRES 18 A 697 ILE ALA ARG TYR LYS SER TYR GLY TRP HIS ILE VAL GLU SEQRES 19 A 697 VAL SER ASP ALA ASP THR ASP ILE THR ALA ILE ALA ALA SEQRES 20 A 697 ALA ILE ASP GLU ALA LYS LYS VAL THR ASN LYS PRO THR SEQRES 21 A 697 LEU VAL ARG LEU THR THR THR ILE GLY PHE GLY SER LEU SEQRES 22 A 697 ALA GLN GLY THR HIS GLY VAL HIS GLY ALA PRO LEU LYS SEQRES 23 A 697 ALA ASP ASP ILE LYS GLN LEU LYS THR LYS TRP GLY PHE SEQRES 24 A 697 ASN PRO GLU GLU SER PHE ALA VAL PRO ALA GLU VAL THR SEQRES 25 A 697 ALA SER TYR ASN GLU HIS VAL ALA GLU ASN GLN LYS ILE SEQRES 26 A 697 GLN GLN GLN TRP ASN GLU LEU PHE ALA ALA TYR LYS GLN SEQRES 27 A 697 LYS TYR PRO GLU LEU GLY ALA GLU LEU GLN ARG ARG LEU SEQRES 28 A 697 ASP GLY LYS LEU PRO GLU ASN TRP ASP LYS ALA LEU PRO SEQRES 29 A 697 VAL TYR THR PRO ALA ASP ALA ALA VAL ALA THR ARG LYS SEQRES 30 A 697 LEU SER GLU ILE VAL LEU SER LYS ILE ILE PRO GLU VAL SEQRES 31 A 697 PRO GLU ILE ILE GLY GLY SER ALA ASP LEU THR PRO SER SEQRES 32 A 697 ASN LEU THR LYS ALA LYS GLY THR VAL ASP PHE GLN PRO SEQRES 33 A 697 ALA ALA THR GLY LEU GLY ASP TYR SER GLY ARG TYR ILE SEQRES 34 A 697 ARG TYR GLY VAL ARG GLU HIS ALA MET GLY ALA ILE MET SEQRES 35 A 697 ASN GLY ILE ALA ALA PHE GLY ALA ASN TYR LYS ASN TYR SEQRES 36 A 697 GLY GLY THR PHE LEU ASN PHE VAL SER TYR ALA ALA GLY SEQRES 37 A 697 ALA VAL ARG LEU SER ALA LEU SER GLU PHE PRO ILE THR SEQRES 38 A 697 TRP VAL ALA THR HIS ASP SER ILE GLY LEU GLY GLU ASP SEQRES 39 A 697 GLY PRO THR HIS GLN PRO ILE GLU THR LEU ALA HIS PHE SEQRES 40 A 697 ARG ALA THR PRO ASN ILE SER VAL TRP ARG PRO ALA ASP SEQRES 41 A 697 GLY ASN GLU THR SER ALA ALA TYR LYS SER ALA ILE GLU SEQRES 42 A 697 SER THR HIS THR PRO HIS ILE LEU ALA LEU THR ARG GLN SEQRES 43 A 697 ASN LEU PRO GLN LEU GLU GLY SER SER ILE GLU LYS ALA SEQRES 44 A 697 SER LYS GLY GLY TYR THR LEU VAL GLN GLN ASP LYS ALA SEQRES 45 A 697 ASP ILE ILE ILE VAL ALA THR GLY SER GLU VAL SER LEU SEQRES 46 A 697 ALA VAL ASP ALA LEU LYS VAL LEU GLU GLY GLN GLY ILE SEQRES 47 A 697 LYS ALA GLY VAL VAL SER LEU PRO ASP GLN LEU THR PHE SEQRES 48 A 697 ASP LYS GLN SER GLU GLU TYR LYS LEU SER VAL LEU PRO SEQRES 49 A 697 ASP GLY VAL PRO ILE LEU SER VAL GLU VAL MET SER THR SEQRES 50 A 697 PHE GLY TRP SER LYS TYR SER HIS GLN GLN PHE GLY LEU SEQRES 51 A 697 ASN ARG PHE GLY ALA SER GLY LYS ALA PRO GLU ILE PHE SEQRES 52 A 697 LYS LEU PHE GLU PHE THR PRO GLU GLY VAL ALA GLU ARG SEQRES 53 A 697 ALA ALA LYS THR VAL ALA PHE TYR LYS GLY LYS ASP VAL SEQRES 54 A 697 VAL SER PRO LEU ARG SER ALA PHE HET CA A 701 1 HET PEG A 702 7 HET PEG A 703 7 HET 8FL A 704 27 HETNAM CA CALCIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 8FL 2-[(2R)-3-[(4-AZANYL-2-METHYL-PYRIMIDIN-5-YL)METHYL]-4- HETNAM 2 8FL METHYL-2-OXIDANYL-2H-1,3-THIAZOL-5-YL]ETHYL PHOSPHONO HETNAM 3 8FL HYDROGEN PHOSPHATE FORMUL 2 CA CA 2+ FORMUL 3 PEG 2(C4 H10 O3) FORMUL 5 8FL C12 H20 N4 O8 P2 S FORMUL 6 HOH *1067(H2 O) HELIX 1 AA1 SER A 2 ASN A 24 1 23 HELIX 2 AA2 PRO A 28 MET A 45 1 18 HELIX 3 AA3 ASN A 64 HIS A 66 5 3 HELIX 4 AA4 ALA A 67 TYR A 78 1 12 HELIX 5 AA5 THR A 83 LYS A 89 1 7 HELIX 6 AA6 GLY A 117 ASN A 138 1 22 HELIX 7 AA7 GLY A 154 GLU A 160 1 7 HELIX 8 AA8 GLU A 160 LEU A 173 1 14 HELIX 9 AA9 GLU A 194 ALA A 196 5 3 HELIX 10 AB1 ASP A 200 TYR A 208 1 9 HELIX 11 AB2 ASP A 221 VAL A 235 1 15 HELIX 12 AB3 THR A 257 HIS A 261 5 5 HELIX 13 AB4 LYS A 266 TRP A 277 1 12 HELIX 14 AB5 PRO A 288 TYR A 320 1 33 HELIX 15 AB6 TYR A 320 ASP A 332 1 13 HELIX 16 AB7 ASN A 338 LEU A 343 5 6 HELIX 17 AB8 THR A 355 ILE A 367 1 13 HELIX 18 AB9 PRO A 368 VAL A 370 5 3 HELIX 19 AC1 LEU A 380 LEU A 385 1 6 HELIX 20 AC2 PRO A 396 GLY A 400 5 5 HELIX 21 AC3 ARG A 414 GLY A 429 1 16 HELIX 22 AC4 LEU A 440 SER A 444 1 5 HELIX 23 AC5 ALA A 446 GLU A 457 1 12 HELIX 24 AC6 SER A 468 GLY A 472 5 5 HELIX 25 AC7 GLU A 482 ALA A 489 1 8 HELIX 26 AC8 ASP A 500 SER A 514 1 15 HELIX 27 AC9 SER A 535 SER A 540 1 6 HELIX 28 AD1 SER A 561 GLN A 576 1 16 HELIX 29 AD2 ASP A 587 LYS A 593 1 7 HELIX 30 AD3 SER A 595 LEU A 603 1 9 HELIX 31 AD4 GLY A 619 TYR A 623 5 5 HELIX 32 AD5 LYS A 638 PHE A 646 1 9 HELIX 33 AD6 THR A 649 TYR A 664 1 16 SHEET 1 AA1 5 ARG A 59 LEU A 62 0 SHEET 2 AA1 5 THR A 149 LEU A 153 1 O TYR A 150 N ARG A 59 SHEET 3 AA1 5 LEU A 178 ASP A 184 1 O ILE A 179 N THR A 149 SHEET 4 AA1 5 THR A 240 THR A 245 1 O THR A 240 N ALA A 180 SHEET 5 AA1 5 HIS A 211 VAL A 215 1 N VAL A 215 O ARG A 243 SHEET 1 AA2 2 ILE A 187 SER A 188 0 SHEET 2 AA2 2 GLY A 191 SER A 192 -1 O GLY A 191 N SER A 188 SHEET 1 AA3 2 VAL A 353 ALA A 354 0 SHEET 2 AA3 2 ASN A 527 LEU A 528 -1 O LEU A 528 N VAL A 353 SHEET 1 AA4 6 TYR A 408 ARG A 410 0 SHEET 2 AA4 6 ILE A 373 SER A 377 1 N GLY A 375 O ILE A 409 SHEET 3 AA4 6 LYS A 433 PHE A 439 1 O GLY A 437 N GLY A 376 SHEET 4 AA4 6 ILE A 460 THR A 465 1 O VAL A 463 N GLY A 436 SHEET 5 AA4 6 HIS A 519 ALA A 522 1 O LEU A 521 N TRP A 462 SHEET 6 AA4 6 SER A 494 TRP A 496 1 N TRP A 496 O ALA A 522 SHEET 1 AA5 5 TYR A 544 VAL A 547 0 SHEET 2 AA5 5 ALA A 580 SER A 584 -1 O SER A 584 N TYR A 544 SHEET 3 AA5 5 ILE A 554 ALA A 558 1 N ILE A 556 O GLY A 581 SHEET 4 AA5 5 ILE A 609 VAL A 612 1 O LEU A 610 N ILE A 555 SHEET 5 AA5 5 GLN A 626 PHE A 628 1 O PHE A 628 N SER A 611 LINK OD2 ASP A 155 CA CA A 701 1555 1555 2.28 LINK OD1 ASN A 185 CA CA A 701 1555 1555 2.33 LINK O ILE A 187 CA CA A 701 1555 1555 2.24 LINK CA CA A 701 O1A 8FL A 704 1555 1555 2.25 LINK CA CA A 701 O3B 8FL A 704 1555 1555 2.28 LINK CA CA A 701 O HOH A 962 1555 1555 2.34 SITE 1 AC1 5 ASP A 155 ASN A 185 ILE A 187 8FL A 704 SITE 2 AC1 5 HOH A 962 SITE 1 AC2 3 ASN A 310 LEU A 331 ASP A 332 SITE 1 AC3 2 ALA A 134 ASN A 138 SITE 1 AC4 25 ALA A 30 HIS A 66 GLY A 114 PRO A 115 SITE 2 AC4 25 LEU A 116 ASP A 155 GLY A 156 GLU A 160 SITE 3 AC4 25 ASN A 185 ILE A 187 SER A 188 ILE A 189 SITE 4 AC4 25 ILE A 248 HIS A 261 ASP A 379 GLU A 415 SITE 5 AC4 25 PHE A 442 TYR A 445 HIS A 478 CA A 701 SITE 6 AC4 25 HOH A 802 HOH A 962 HOH A1008 HOH A1197 SITE 7 AC4 25 HOH A1502 CRYST1 101.205 185.174 99.099 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009881 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005400 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010091 0.00000