data_5XUV # _entry.id 5XUV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5XUV pdb_00005xuv 10.2210/pdb5xuv/pdb WWPDB D_1300004214 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5XUV _pdbx_database_status.recvd_initial_deposition_date 2017-06-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kondo, J.' 1 ? 'Sugawara, T.' 2 ? 'Saneyoshi, H.' 3 ? 'Ono, A.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem. Commun. (Camb.)' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1364-548X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 53 _citation.language ? _citation.page_first 11747 _citation.page_last 11750 _citation.title ;Crystal structure of a DNA duplex containing four Ag(i) ions in consecutive dinuclear Ag(i)-mediated base pairs: 4-thiothymine-2Ag(i)-4-thiothymine ; _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/c7cc06153f _citation.pdbx_database_id_PubMed 28991300 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kondo, J.' 1 ? primary 'Sugawara, T.' 2 ? primary 'Saneyoshi, H.' 3 ? primary 'Ono, A.' 4 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5XUV _cell.details ? _cell.formula_units_Z ? _cell.length_a 25.213 _cell.length_a_esd ? _cell.length_b 40.487 _cell.length_b_esd ? _cell.length_c 66.432 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XUV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*(8RO)P*(8RO)P*TP*CP*GP*CP*G)-3') ; 3654.512 2 ? ? ? ? 2 non-polymer syn 'SILVER ION' 107.868 4 ? ? ? ? 3 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 4 water nat water 18.015 23 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(8RO)(8RO)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAXXTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 8RO n 1 7 8RO n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5XUV _struct_ref.pdbx_db_accession 5XUV _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5XUV A 1 ? 12 ? 5XUV 1 ? 12 ? 1 12 2 1 5XUV B 1 ? 12 ? 5XUV 13 ? 24 ? 13 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8RO 'DNA linking' n ;[(2~{R},3~{S},5~{R})-5-(5-methyl-2-oxidanylidene-7-thia-1,3-diazabicyclo[4.1.0]hept-5-en-3-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphite ; ? 'C10 H15 N2 O6 P S' 322.275 AG non-polymer . 'SILVER ION' ? 'Ag 1' 107.868 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5XUV _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'sodium cacodylate, silver nitrate, spermine, 2-methyl-2,4-pentanediol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 4M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-11-09 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-1A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-1A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate 31.830 _reflns.entry_id 5XUV _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 33.216 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10314 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 99.700 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.703 _reflns.pdbx_Rmerge_I_obs 0.045 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.500 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.315 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.049 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.900 1.950 ? 5.020 ? ? ? ? 737 96.800 ? ? ? ? 0.293 ? ? ? ? ? ? ? ? 6.345 ? ? ? ? 0.319 ? ? 1 1 0.982 ? 1.950 2.000 ? 5.730 ? ? ? ? 719 100.000 ? ? ? ? 0.259 ? ? ? ? ? ? ? ? 6.478 ? ? ? ? 0.281 ? ? 2 1 0.987 ? 2.000 2.060 ? 6.850 ? ? ? ? 732 100.000 ? ? ? ? 0.228 ? ? ? ? ? ? ? ? 6.440 ? ? ? ? 0.248 ? ? 3 1 0.987 ? 2.060 2.120 ? 8.280 ? ? ? ? 711 99.900 ? ? ? ? 0.199 ? ? ? ? ? ? ? ? 6.958 ? ? ? ? 0.215 ? ? 4 1 0.988 ? 2.120 2.190 ? 10.810 ? ? ? ? 676 99.900 ? ? ? ? 0.140 ? ? ? ? ? ? ? ? 7.121 ? ? ? ? 0.150 ? ? 5 1 0.997 ? 2.190 2.270 ? 12.500 ? ? ? ? 696 100.000 ? ? ? ? 0.113 ? ? ? ? ? ? ? ? 6.819 ? ? ? ? 0.123 ? ? 6 1 0.997 ? 2.270 2.360 ? 14.880 ? ? ? ? 615 100.000 ? ? ? ? 0.097 ? ? ? ? ? ? ? ? 7.000 ? ? ? ? 0.104 ? ? 7 1 0.998 ? 2.360 2.450 ? 17.840 ? ? ? ? 605 100.000 ? ? ? ? 0.073 ? ? ? ? ? ? ? ? 6.645 ? ? ? ? 0.080 ? ? 8 1 0.999 ? 2.450 2.560 ? 20.180 ? ? ? ? 602 100.000 ? ? ? ? 0.078 ? ? ? ? ? ? ? ? 6.600 ? ? ? ? 0.084 ? ? 9 1 0.998 ? 2.560 2.690 ? 22.760 ? ? ? ? 564 100.000 ? ? ? ? 0.068 ? ? ? ? ? ? ? ? 6.484 ? ? ? ? 0.074 ? ? 10 1 0.998 ? 2.690 2.830 ? 26.360 ? ? ? ? 540 100.000 ? ? ? ? 0.058 ? ? ? ? ? ? ? ? 7.202 ? ? ? ? 0.062 ? ? 11 1 0.999 ? 2.830 3.000 ? 28.670 ? ? ? ? 495 100.000 ? ? ? ? 0.045 ? ? ? ? ? ? ? ? 7.071 ? ? ? ? 0.049 ? ? 12 1 1.000 ? 3.000 3.210 ? 33.170 ? ? ? ? 483 99.600 ? ? ? ? 0.036 ? ? ? ? ? ? ? ? 6.863 ? ? ? ? 0.039 ? ? 13 1 1.000 ? 3.210 3.470 ? 34.680 ? ? ? ? 433 99.500 ? ? ? ? 0.043 ? ? ? ? ? ? ? ? 6.430 ? ? ? ? 0.047 ? ? 14 1 0.999 ? 3.470 3.800 ? 38.030 ? ? ? ? 406 100.000 ? ? ? ? 0.037 ? ? ? ? ? ? ? ? 6.217 ? ? ? ? 0.041 ? ? 15 1 0.999 ? 3.800 4.250 ? 42.230 ? ? ? ? 374 100.000 ? ? ? ? 0.036 ? ? ? ? ? ? ? ? 6.564 ? ? ? ? 0.040 ? ? 16 1 0.999 ? 4.250 4.900 ? 42.830 ? ? ? ? 329 100.000 ? ? ? ? 0.035 ? ? ? ? ? ? ? ? 6.742 ? ? ? ? 0.038 ? ? 17 1 0.999 ? 4.900 6.010 ? 43.590 ? ? ? ? 273 100.000 ? ? ? ? 0.033 ? ? ? ? ? ? ? ? 6.692 ? ? ? ? 0.036 ? ? 18 1 0.999 ? 6.010 8.490 ? 44.540 ? ? ? ? 210 100.000 ? ? ? ? 0.033 ? ? ? ? ? ? ? ? 6.086 ? ? ? ? 0.036 ? ? 19 1 0.999 ? 8.490 33.216 ? 50.350 ? ? ? ? 114 99.100 ? ? ? ? 0.028 ? ? ? ? ? ? ? ? 7.325 ? ? ? ? 0.030 ? ? 20 1 0.999 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 64.980 _refine.B_iso_mean 41.1742 _refine.B_iso_min 30.960 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5XUV _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9 _refine.ls_d_res_low 33.2160 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10250 _refine.ls_number_reflns_R_free 997 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.9800 _refine.ls_percent_reflns_R_free 9.7300 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1890 _refine.ls_R_factor_R_free 0.2216 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1854 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.920 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4L24 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 23.8400 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1600 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.9 _refine_hist.d_res_low 33.2160 _refine_hist.pdbx_number_atoms_ligand 50 _refine_hist.number_atoms_solvent 23 _refine_hist.number_atoms_total 557 _refine_hist.pdbx_number_residues_total 22 _refine_hist.pdbx_B_iso_mean_ligand 41.70 _refine_hist.pdbx_B_iso_mean_solvent 42.15 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 484 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 540 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.088 ? 830 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.047 ? 90 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 24 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 34.381 ? 208 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.8988 1.9989 1430 . 130 1300 98.0000 . . . 0.2381 0.0000 0.2142 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 1.9989 2.1241 1477 . 150 1327 100.0000 . . . 0.2014 0.0000 0.1987 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.1241 2.2881 1487 . 153 1334 99.0000 . . . 0.2293 0.0000 0.1958 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.2881 2.5182 1485 . 134 1351 100.0000 . . . 0.2248 0.0000 0.2001 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.5182 2.8825 1470 . 135 1335 100.0000 . . . 0.2665 0.0000 0.2121 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 2.8825 3.6309 1422 . 125 1297 96.0000 . . . 0.2804 0.0000 0.2161 . . . . . . 7 . . . 'X-RAY DIFFRACTION' 3.6309 33.2211 1479 . 170 1309 100.0000 . . . 0.1838 0.0000 0.1472 . . . . . . 7 . . . # _struct.entry_id 5XUV _struct.title 'Crystal structure of DNA duplex containing 4-thiothymine-2Ag(I)-4-thiothymine base pairs' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5XUV _struct_keywords.text 'DNA, metallo-base pair, silver' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 2 ? H N N 2 ? I N N 4 ? J N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A DA 5 "O3'" ? ? ? 1_555 A 8RO 6 P ? ? A DA 5 A 8RO 6 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale2 covale none ? A 8RO 6 "O3'" ? ? ? 1_555 A 8RO 7 P ? ? A 8RO 6 A 8RO 7 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale3 covale one ? A 8RO 7 "O3'" ? ? ? 1_555 A DT 8 P ? ? A 8RO 7 A DT 8 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale4 covale one ? B DA 5 "O3'" ? ? ? 1_555 B 8RO 6 P ? ? B DA 17 B 8RO 18 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale5 covale none ? B 8RO 6 "O3'" ? ? ? 1_555 B 8RO 7 P ? ? B 8RO 18 B 8RO 19 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale6 covale one ? B 8RO 7 "O3'" ? ? ? 1_555 B DT 8 P ? ? B 8RO 19 B DT 20 1_555 ? ? ? ? ? ? ? 1.606 ? ? metalc1 metalc ? ? A 8RO 6 N3 ? ? ? 1_555 C AG . AG ? ? A 8RO 6 A AG 101 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc2 metalc ? ? A 8RO 6 S4 ? ? ? 1_555 D AG . AG ? ? A 8RO 6 A AG 102 1_555 ? ? ? ? ? ? ? 2.750 ? ? metalc3 metalc ? ? A 8RO 6 O2 ? ? ? 1_555 E K . K ? ? A 8RO 6 A K 103 1_555 ? ? ? ? ? ? ? 2.653 ? ? metalc4 metalc ? ? A 8RO 6 S4 ? ? ? 1_555 H AG . AG ? ? A 8RO 6 B AG 102 1_555 ? ? ? ? ? ? ? 2.369 ? ? metalc5 metalc ? ? A 8RO 7 S4 ? ? ? 1_555 D AG . AG ? ? A 8RO 7 A AG 102 1_555 ? ? ? ? ? ? ? 2.481 ? ? metalc6 metalc ? ? A 8RO 7 "O4'" ? ? ? 1_555 E K . K ? ? A 8RO 7 A K 103 1_555 ? ? ? ? ? ? ? 3.052 ? ? metalc7 metalc ? ? A 8RO 7 O2 ? ? ? 1_555 E K . K ? ? A 8RO 7 A K 103 1_555 ? ? ? ? ? ? ? 3.154 ? ? metalc8 metalc ? ? A 8RO 7 O2 ? ? ? 1_555 F K . K ? ? A 8RO 7 A K 104 1_555 ? ? ? ? ? ? ? 2.692 ? ? metalc9 metalc ? ? A 8RO 7 N3 ? ? ? 1_555 G AG . AG ? ? A 8RO 7 B AG 101 1_555 ? ? ? ? ? ? ? 2.229 ? ? metalc10 metalc ? ? A DT 8 O2 ? ? ? 1_555 F K . K ? ? A DT 8 A K 104 1_555 ? ? ? ? ? ? ? 2.655 ? ? metalc11 metalc ? ? C AG . AG ? ? ? 1_555 B 8RO 7 N3 ? ? A AG 101 B 8RO 19 1_555 ? ? ? ? ? ? ? 2.078 ? ? metalc12 metalc ? ? D AG . AG ? ? ? 1_555 B 8RO 6 S4 ? ? A AG 102 B 8RO 18 1_555 ? ? ? ? ? ? ? 2.385 ? ? metalc13 metalc ? ? E K . K ? ? ? 1_555 B 8RO 7 O2 ? ? A K 103 B 8RO 19 1_555 ? ? ? ? ? ? ? 2.683 ? ? metalc14 metalc ? ? E K . K ? ? ? 1_555 B DT 8 O2 ? ? A K 103 B DT 20 1_555 ? ? ? ? ? ? ? 2.888 ? ? metalc15 metalc ? ? E K . K ? ? ? 1_555 J HOH . O ? ? A K 103 B HOH 206 1_555 ? ? ? ? ? ? ? 2.711 ? ? metalc16 metalc ? ? F K . K ? ? ? 1_555 I HOH . O ? ? A K 104 A HOH 204 1_555 ? ? ? ? ? ? ? 2.729 ? ? metalc17 metalc ? ? F K . K ? ? ? 1_555 I HOH . O ? ? A K 104 A HOH 214 1_555 ? ? ? ? ? ? ? 2.638 ? ? metalc18 metalc ? ? F K . K ? ? ? 1_555 B 8RO 6 O2 ? ? A K 104 B 8RO 18 1_555 ? ? ? ? ? ? ? 2.810 ? ? metalc19 metalc ? ? F K . K ? ? ? 1_555 B 8RO 7 "O4'" ? ? A K 104 B 8RO 19 1_555 ? ? ? ? ? ? ? 3.172 ? ? metalc20 metalc ? ? F K . K ? ? ? 1_555 B 8RO 7 O2 ? ? A K 104 B 8RO 19 1_555 ? ? ? ? ? ? ? 3.269 ? ? metalc21 metalc ? ? B 8RO 6 N3 ? ? ? 1_555 G AG . AG ? ? B 8RO 18 B AG 101 1_555 ? ? ? ? ? ? ? 2.196 ? ? metalc22 metalc ? ? B 8RO 6 S4 ? ? ? 1_555 H AG . AG ? ? B 8RO 18 B AG 102 1_555 ? ? ? ? ? ? ? 2.688 ? ? metalc23 metalc ? ? B 8RO 7 S4 ? ? ? 1_555 H AG . AG ? ? B 8RO 19 B AG 102 1_555 ? ? ? ? ? ? ? 2.379 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AG 101 ? 5 'binding site for residue AG A 101' AC2 Software A AG 102 ? 7 'binding site for residue AG A 102' AC3 Software A K 103 ? 5 'binding site for residue K A 103' AC4 Software A K 104 ? 6 'binding site for residue K A 104' AC5 Software B AG 101 ? 6 'binding site for residue AG B 101' AC6 Software B AG 102 ? 6 'binding site for residue AG B 102' AC7 Software A 8RO 6 ? 16 'binding site for residues 8RO A 6 and 8RO A 7' AC8 Software B DA 17 ? 13 'binding site for Di-nucleotide DA B 17 and 8RO B 18' AC9 Software B 8RO 18 ? 12 'binding site for residues 8RO B 18 and 8RO B 19' AD1 Software B 8RO 19 ? 10 'binding site for Di-nucleotide 8RO B 19 and DT B 20' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DA A 5 ? DA A 5 . ? 1_555 ? 2 AC1 5 8RO A 6 ? 8RO A 6 . ? 1_555 ? 3 AC1 5 8RO B 7 ? 8RO B 19 . ? 1_555 ? 4 AC1 5 AG G . ? AG B 101 . ? 1_555 ? 5 AC1 5 AG H . ? AG B 102 . ? 1_555 ? 6 AC2 7 8RO A 6 ? 8RO A 6 . ? 1_555 ? 7 AC2 7 8RO A 7 ? 8RO A 7 . ? 1_555 ? 8 AC2 7 DA B 5 ? DA B 17 . ? 1_555 ? 9 AC2 7 8RO B 6 ? 8RO B 18 . ? 1_555 ? 10 AC2 7 AG G . ? AG B 101 . ? 1_555 ? 11 AC2 7 AG H . ? AG B 102 . ? 1_555 ? 12 AC2 7 HOH J . ? HOH B 208 . ? 1_555 ? 13 AC3 5 8RO A 6 ? 8RO A 6 . ? 1_555 ? 14 AC3 5 8RO A 7 ? 8RO A 7 . ? 1_555 ? 15 AC3 5 8RO B 7 ? 8RO B 19 . ? 1_555 ? 16 AC3 5 DT B 8 ? DT B 20 . ? 1_555 ? 17 AC3 5 HOH J . ? HOH B 206 . ? 1_555 ? 18 AC4 6 8RO A 7 ? 8RO A 7 . ? 1_555 ? 19 AC4 6 DT A 8 ? DT A 8 . ? 1_555 ? 20 AC4 6 HOH I . ? HOH A 204 . ? 1_555 ? 21 AC4 6 HOH I . ? HOH A 214 . ? 1_555 ? 22 AC4 6 8RO B 6 ? 8RO B 18 . ? 1_555 ? 23 AC4 6 8RO B 7 ? 8RO B 19 . ? 1_555 ? 24 AC5 6 8RO A 7 ? 8RO A 7 . ? 1_555 ? 25 AC5 6 AG C . ? AG A 101 . ? 1_555 ? 26 AC5 6 AG D . ? AG A 102 . ? 1_555 ? 27 AC5 6 DA B 5 ? DA B 17 . ? 1_555 ? 28 AC5 6 8RO B 6 ? 8RO B 18 . ? 1_555 ? 29 AC5 6 8RO B 7 ? 8RO B 19 . ? 1_555 ? 30 AC6 6 DA A 5 ? DA A 5 . ? 1_555 ? 31 AC6 6 8RO A 6 ? 8RO A 6 . ? 1_555 ? 32 AC6 6 AG C . ? AG A 101 . ? 1_555 ? 33 AC6 6 AG D . ? AG A 102 . ? 1_555 ? 34 AC6 6 8RO B 6 ? 8RO B 18 . ? 1_555 ? 35 AC6 6 8RO B 7 ? 8RO B 19 . ? 1_555 ? 36 AC7 16 DC A 1 ? DC A 1 . ? 3_554 ? 37 AC7 16 DA A 5 ? DA A 5 . ? 1_555 ? 38 AC7 16 DT A 8 ? DT A 8 . ? 1_555 ? 39 AC7 16 AG C . ? AG A 101 . ? 1_555 ? 40 AC7 16 AG D . ? AG A 102 . ? 1_555 ? 41 AC7 16 K E . ? K A 103 . ? 1_555 ? 42 AC7 16 K F . ? K A 104 . ? 1_555 ? 43 AC7 16 HOH I . ? HOH A 203 . ? 1_555 ? 44 AC7 16 HOH I . ? HOH A 206 . ? 1_555 ? 45 AC7 16 HOH I . ? HOH A 208 . ? 1_555 ? 46 AC7 16 HOH I . ? HOH A 211 . ? 1_555 ? 47 AC7 16 DA B 5 ? DA B 17 . ? 1_555 ? 48 AC7 16 8RO B 7 ? 8RO B 19 . ? 1_555 ? 49 AC7 16 DT B 8 ? DT B 20 . ? 1_555 ? 50 AC7 16 AG G . ? AG B 101 . ? 1_555 ? 51 AC7 16 AG H . ? AG B 102 . ? 1_555 ? 52 AC8 13 8RO A 7 ? 8RO A 7 . ? 1_555 ? 53 AC8 13 DT A 8 ? DT A 8 . ? 1_555 ? 54 AC8 13 DC A 9 ? DC A 9 . ? 1_555 ? 55 AC8 13 AG D . ? AG A 102 . ? 1_555 ? 56 AC8 13 K F . ? K A 104 . ? 1_555 ? 57 AC8 13 HOH I . ? HOH A 201 . ? 1_555 ? 58 AC8 13 DG B 4 ? DG B 16 . ? 1_555 ? 59 AC8 13 8RO B 7 ? 8RO B 19 . ? 1_555 ? 60 AC8 13 DG B 12 ? DG B 24 . ? 2_555 ? 61 AC8 13 AG G . ? AG B 101 . ? 1_555 ? 62 AC8 13 AG H . ? AG B 102 . ? 1_555 ? 63 AC8 13 HOH J . ? HOH B 202 . ? 1_555 ? 64 AC8 13 HOH J . ? HOH B 204 . ? 1_555 ? 65 AC9 12 DA A 5 ? DA A 5 . ? 1_555 ? 66 AC9 12 8RO A 7 ? 8RO A 7 . ? 1_555 ? 67 AC9 12 DT A 8 ? DT A 8 . ? 1_555 ? 68 AC9 12 AG C . ? AG A 101 . ? 1_555 ? 69 AC9 12 AG D . ? AG A 102 . ? 1_555 ? 70 AC9 12 K E . ? K A 103 . ? 1_555 ? 71 AC9 12 K F . ? K A 104 . ? 1_555 ? 72 AC9 12 DA B 5 ? DA B 17 . ? 1_555 ? 73 AC9 12 DT B 8 ? DT B 20 . ? 1_555 ? 74 AC9 12 AG G . ? AG B 101 . ? 1_555 ? 75 AC9 12 AG H . ? AG B 102 . ? 1_555 ? 76 AC9 12 HOH J . ? HOH B 204 . ? 1_555 ? 77 AD1 10 DA A 5 ? DA A 5 . ? 1_555 ? 78 AD1 10 8RO A 6 ? 8RO A 6 . ? 1_555 ? 79 AD1 10 8RO A 7 ? 8RO A 7 . ? 1_555 ? 80 AD1 10 AG C . ? AG A 101 . ? 1_555 ? 81 AD1 10 K E . ? K A 103 . ? 1_555 ? 82 AD1 10 K F . ? K A 104 . ? 1_555 ? 83 AD1 10 8RO B 6 ? 8RO B 18 . ? 1_555 ? 84 AD1 10 DC B 9 ? DC B 21 . ? 1_555 ? 85 AD1 10 AG G . ? AG B 101 . ? 1_555 ? 86 AD1 10 AG H . ? AG B 102 . ? 1_555 ? # _atom_sites.entry_id 5XUV _atom_sites.fract_transf_matrix[1][1] 0.039662 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024699 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015053 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol AG C K N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC Cd A . n A 1 2 DG 2 2 2 DG Gd A . n A 1 3 DC 3 3 3 DC Cd A . n A 1 4 DG 4 4 4 DG Gd A . n A 1 5 DA 5 5 5 DA Ad A . n A 1 6 8RO 6 6 6 8RO 4Sd A . n A 1 7 8RO 7 7 7 8RO 4Sd A . n A 1 8 DT 8 8 8 DT Td A . n A 1 9 DC 9 9 9 DC Cd A . n A 1 10 DG 10 10 10 DG Gd A . n A 1 11 DC 11 11 11 DC Cd A . n A 1 12 DG 12 12 12 DG Gd A . n B 1 1 DC 1 13 13 DC Cd B . n B 1 2 DG 2 14 14 DG Gd B . n B 1 3 DC 3 15 15 DC Cd B . n B 1 4 DG 4 16 16 DG Gd B . n B 1 5 DA 5 17 17 DA Ad B . n B 1 6 8RO 6 18 18 8RO 4Sd B . n B 1 7 8RO 7 19 19 8RO 4Sd B . n B 1 8 DT 8 20 20 DT Td B . n B 1 9 DC 9 21 21 DC Cd B . n B 1 10 DG 10 22 22 DG Gd B . n B 1 11 DC 11 23 23 DC Cd B . n B 1 12 DG 12 24 24 DG Gd B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AG 1 101 52 AG AG A . D 2 AG 1 102 54 AG AG A . E 3 K 1 103 61 K K A . F 3 K 1 104 62 K K A . G 2 AG 1 101 51 AG AG B . H 2 AG 1 102 53 AG AG B . I 4 HOH 1 201 102 HOH HOH A . I 4 HOH 2 202 119 HOH HOH A . I 4 HOH 3 203 105 HOH HOH A . I 4 HOH 4 204 101 HOH HOH A . I 4 HOH 5 205 111 HOH HOH A . I 4 HOH 6 206 114 HOH HOH A . I 4 HOH 7 207 121 HOH HOH A . I 4 HOH 8 208 116 HOH HOH A . I 4 HOH 9 209 108 HOH HOH A . I 4 HOH 10 210 112 HOH HOH A . I 4 HOH 11 211 122 HOH HOH A . I 4 HOH 12 212 118 HOH HOH A . I 4 HOH 13 213 104 HOH HOH A . I 4 HOH 14 214 117 HOH HOH A . I 4 HOH 15 215 123 HOH HOH A . J 4 HOH 1 201 103 HOH HOH B . J 4 HOH 2 202 110 HOH HOH B . J 4 HOH 3 203 106 HOH HOH B . J 4 HOH 4 204 115 HOH HOH B . J 4 HOH 5 205 107 HOH HOH B . J 4 HOH 6 206 120 HOH HOH B . J 4 HOH 7 207 109 HOH HOH B . J 4 HOH 8 208 113 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2610 ? 1 MORE -29 ? 1 'SSA (A^2)' 4040 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N3 ? A 8RO 6 ? A 8RO 6 ? 1_555 AG ? C AG . ? A AG 101 ? 1_555 N3 ? B 8RO 7 ? B 8RO 19 ? 1_555 171.3 ? 2 S4 ? A 8RO 6 ? A 8RO 6 ? 1_555 AG ? D AG . ? A AG 102 ? 1_555 S4 ? A 8RO 7 ? A 8RO 7 ? 1_555 99.8 ? 3 S4 ? A 8RO 6 ? A 8RO 6 ? 1_555 AG ? D AG . ? A AG 102 ? 1_555 S4 ? B 8RO 6 ? B 8RO 18 ? 1_555 96.3 ? 4 S4 ? A 8RO 7 ? A 8RO 7 ? 1_555 AG ? D AG . ? A AG 102 ? 1_555 S4 ? B 8RO 6 ? B 8RO 18 ? 1_555 161.8 ? 5 O2 ? A 8RO 6 ? A 8RO 6 ? 1_555 K ? E K . ? A K 103 ? 1_555 "O4'" ? A 8RO 7 ? A 8RO 7 ? 1_555 80.8 ? 6 O2 ? A 8RO 6 ? A 8RO 6 ? 1_555 K ? E K . ? A K 103 ? 1_555 O2 ? A 8RO 7 ? A 8RO 7 ? 1_555 79.6 ? 7 "O4'" ? A 8RO 7 ? A 8RO 7 ? 1_555 K ? E K . ? A K 103 ? 1_555 O2 ? A 8RO 7 ? A 8RO 7 ? 1_555 69.2 ? 8 O2 ? A 8RO 6 ? A 8RO 6 ? 1_555 K ? E K . ? A K 103 ? 1_555 O2 ? B 8RO 7 ? B 8RO 19 ? 1_555 91.6 ? 9 "O4'" ? A 8RO 7 ? A 8RO 7 ? 1_555 K ? E K . ? A K 103 ? 1_555 O2 ? B 8RO 7 ? B 8RO 19 ? 1_555 132.7 ? 10 O2 ? A 8RO 7 ? A 8RO 7 ? 1_555 K ? E K . ? A K 103 ? 1_555 O2 ? B 8RO 7 ? B 8RO 19 ? 1_555 63.6 ? 11 O2 ? A 8RO 6 ? A 8RO 6 ? 1_555 K ? E K . ? A K 103 ? 1_555 O2 ? B DT 8 ? B DT 20 ? 1_555 82.9 ? 12 "O4'" ? A 8RO 7 ? A 8RO 7 ? 1_555 K ? E K . ? A K 103 ? 1_555 O2 ? B DT 8 ? B DT 20 ? 1_555 137.6 ? 13 O2 ? A 8RO 7 ? A 8RO 7 ? 1_555 K ? E K . ? A K 103 ? 1_555 O2 ? B DT 8 ? B DT 20 ? 1_555 144.5 ? 14 O2 ? B 8RO 7 ? B 8RO 19 ? 1_555 K ? E K . ? A K 103 ? 1_555 O2 ? B DT 8 ? B DT 20 ? 1_555 86.4 ? 15 O2 ? A 8RO 6 ? A 8RO 6 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? J HOH . ? B HOH 206 ? 1_555 104.9 ? 16 "O4'" ? A 8RO 7 ? A 8RO 7 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? J HOH . ? B HOH 206 ? 1_555 79.2 ? 17 O2 ? A 8RO 7 ? A 8RO 7 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? J HOH . ? B HOH 206 ? 1_555 147.0 ? 18 O2 ? B 8RO 7 ? B 8RO 19 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? J HOH . ? B HOH 206 ? 1_555 146.7 ? 19 O2 ? B DT 8 ? B DT 20 ? 1_555 K ? E K . ? A K 103 ? 1_555 O ? J HOH . ? B HOH 206 ? 1_555 67.7 ? 20 S4 ? A 8RO 6 ? A 8RO 6 ? 1_555 AG ? H AG . ? B AG 102 ? 1_555 S4 ? B 8RO 6 ? B 8RO 18 ? 1_555 98.4 ? 21 S4 ? A 8RO 6 ? A 8RO 6 ? 1_555 AG ? H AG . ? B AG 102 ? 1_555 S4 ? B 8RO 7 ? B 8RO 19 ? 1_555 159.8 ? 22 S4 ? B 8RO 6 ? B 8RO 18 ? 1_555 AG ? H AG . ? B AG 102 ? 1_555 S4 ? B 8RO 7 ? B 8RO 19 ? 1_555 98.9 ? 23 O2 ? A 8RO 7 ? A 8RO 7 ? 1_555 K ? F K . ? A K 104 ? 1_555 O2 ? A DT 8 ? A DT 8 ? 1_555 88.5 ? 24 O2 ? A 8RO 7 ? A 8RO 7 ? 1_555 K ? F K . ? A K 104 ? 1_555 O ? I HOH . ? A HOH 204 ? 1_555 149.9 ? 25 O2 ? A DT 8 ? A DT 8 ? 1_555 K ? F K . ? A K 104 ? 1_555 O ? I HOH . ? A HOH 204 ? 1_555 65.9 ? 26 O2 ? A 8RO 7 ? A 8RO 7 ? 1_555 K ? F K . ? A K 104 ? 1_555 O ? I HOH . ? A HOH 214 ? 1_555 87.6 ? 27 O2 ? A DT 8 ? A DT 8 ? 1_555 K ? F K . ? A K 104 ? 1_555 O ? I HOH . ? A HOH 214 ? 1_555 124.5 ? 28 O ? I HOH . ? A HOH 204 ? 1_555 K ? F K . ? A K 104 ? 1_555 O ? I HOH . ? A HOH 214 ? 1_555 94.0 ? 29 O2 ? A 8RO 7 ? A 8RO 7 ? 1_555 K ? F K . ? A K 104 ? 1_555 O2 ? B 8RO 6 ? B 8RO 18 ? 1_555 92.6 ? 30 O2 ? A DT 8 ? A DT 8 ? 1_555 K ? F K . ? A K 104 ? 1_555 O2 ? B 8RO 6 ? B 8RO 18 ? 1_555 84.3 ? 31 O ? I HOH . ? A HOH 204 ? 1_555 K ? F K . ? A K 104 ? 1_555 O2 ? B 8RO 6 ? B 8RO 18 ? 1_555 99.9 ? 32 O ? I HOH . ? A HOH 214 ? 1_555 K ? F K . ? A K 104 ? 1_555 O2 ? B 8RO 6 ? B 8RO 18 ? 1_555 151.1 ? 33 O2 ? A 8RO 7 ? A 8RO 7 ? 1_555 K ? F K . ? A K 104 ? 1_555 "O4'" ? B 8RO 7 ? B 8RO 19 ? 1_555 128.1 ? 34 O2 ? A DT 8 ? A DT 8 ? 1_555 K ? F K . ? A K 104 ? 1_555 "O4'" ? B 8RO 7 ? B 8RO 19 ? 1_555 138.8 ? 35 O ? I HOH . ? A HOH 204 ? 1_555 K ? F K . ? A K 104 ? 1_555 "O4'" ? B 8RO 7 ? B 8RO 19 ? 1_555 81.6 ? 36 O ? I HOH . ? A HOH 214 ? 1_555 K ? F K . ? A K 104 ? 1_555 "O4'" ? B 8RO 7 ? B 8RO 19 ? 1_555 80.3 ? 37 O2 ? B 8RO 6 ? B 8RO 18 ? 1_555 K ? F K . ? A K 104 ? 1_555 "O4'" ? B 8RO 7 ? B 8RO 19 ? 1_555 76.9 ? 38 O2 ? A 8RO 7 ? A 8RO 7 ? 1_555 K ? F K . ? A K 104 ? 1_555 O2 ? B 8RO 7 ? B 8RO 19 ? 1_555 61.8 ? 39 O2 ? A DT 8 ? A DT 8 ? 1_555 K ? F K . ? A K 104 ? 1_555 O2 ? B 8RO 7 ? B 8RO 19 ? 1_555 143.8 ? 40 O ? I HOH . ? A HOH 204 ? 1_555 K ? F K . ? A K 104 ? 1_555 O2 ? B 8RO 7 ? B 8RO 19 ? 1_555 147.7 ? 41 O ? I HOH . ? A HOH 214 ? 1_555 K ? F K . ? A K 104 ? 1_555 O2 ? B 8RO 7 ? B 8RO 19 ? 1_555 77.5 ? 42 O2 ? B 8RO 6 ? B 8RO 18 ? 1_555 K ? F K . ? A K 104 ? 1_555 O2 ? B 8RO 7 ? B 8RO 19 ? 1_555 77.3 ? 43 "O4'" ? B 8RO 7 ? B 8RO 19 ? 1_555 K ? F K . ? A K 104 ? 1_555 O2 ? B 8RO 7 ? B 8RO 19 ? 1_555 66.3 ? 44 N3 ? A 8RO 7 ? A 8RO 7 ? 1_555 AG ? G AG . ? B AG 101 ? 1_555 N3 ? B 8RO 6 ? B 8RO 18 ? 1_555 168.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-09-20 2 'Structure model' 1 1 2017-11-08 3 'Structure model' 1 2 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_volume' 3 2 'Structure model' '_citation.page_first' 4 2 'Structure model' '_citation.page_last' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 2 'Structure model' '_citation.title' 8 3 'Structure model' '_database_2.pdbx_DOI' 9 3 'Structure model' '_database_2.pdbx_database_accession' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 25 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 26 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 27 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 28 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 29 3 'Structure model' '_pdbx_struct_conn_angle.value' 30 3 'Structure model' '_struct_conn.conn_type_id' 31 3 'Structure model' '_struct_conn.id' 32 3 'Structure model' '_struct_conn.pdbx_dist_value' 33 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 34 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 35 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 36 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 37 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 38 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 39 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 40 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 41 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 42 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 43 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 44 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 45 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 46 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 47 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1_2155 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 DT _pdbx_validate_rmsd_angle.auth_seq_id_1 20 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 DT _pdbx_validate_rmsd_angle.auth_seq_id_2 20 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 DT _pdbx_validate_rmsd_angle.auth_seq_id_3 20 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.65 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.35 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 8RO P P N N 1 8RO OP1 O N N 2 8RO OP2 O N N 3 8RO "O5'" O N N 4 8RO "C5'" C N N 5 8RO "C4'" C N R 6 8RO "O4'" O N N 7 8RO "C3'" C N S 8 8RO "O3'" O N N 9 8RO "C2'" C N N 10 8RO "C1'" C N R 11 8RO N1 N N N 12 8RO C2 C N N 13 8RO O2 O N N 14 8RO N3 N N N 15 8RO C4 C N N 16 8RO S4 S N N 17 8RO C5 C N N 18 8RO C7 C N N 19 8RO C6 C N N 20 8RO H1 H N N 21 8RO H2 H N N 22 8RO H3 H N N 23 8RO H4 H N N 24 8RO H5 H N N 25 8RO H6 H N N 26 8RO H7 H N N 27 8RO H8 H N N 28 8RO H9 H N N 29 8RO H10 H N N 30 8RO H11 H N N 31 8RO H12 H N N 32 8RO H13 H N N 33 8RO H14 H N N 34 8RO H15 H N N 35 AG AG AG N N 36 DA OP3 O N N 37 DA P P N N 38 DA OP1 O N N 39 DA OP2 O N N 40 DA "O5'" O N N 41 DA "C5'" C N N 42 DA "C4'" C N R 43 DA "O4'" O N N 44 DA "C3'" C N S 45 DA "O3'" O N N 46 DA "C2'" C N N 47 DA "C1'" C N R 48 DA N9 N Y N 49 DA C8 C Y N 50 DA N7 N Y N 51 DA C5 C Y N 52 DA C6 C Y N 53 DA N6 N N N 54 DA N1 N Y N 55 DA C2 C Y N 56 DA N3 N Y N 57 DA C4 C Y N 58 DA HOP3 H N N 59 DA HOP2 H N N 60 DA "H5'" H N N 61 DA "H5''" H N N 62 DA "H4'" H N N 63 DA "H3'" H N N 64 DA "HO3'" H N N 65 DA "H2'" H N N 66 DA "H2''" H N N 67 DA "H1'" H N N 68 DA H8 H N N 69 DA H61 H N N 70 DA H62 H N N 71 DA H2 H N N 72 DC OP3 O N N 73 DC P P N N 74 DC OP1 O N N 75 DC OP2 O N N 76 DC "O5'" O N N 77 DC "C5'" C N N 78 DC "C4'" C N R 79 DC "O4'" O N N 80 DC "C3'" C N S 81 DC "O3'" O N N 82 DC "C2'" C N N 83 DC "C1'" C N R 84 DC N1 N N N 85 DC C2 C N N 86 DC O2 O N N 87 DC N3 N N N 88 DC C4 C N N 89 DC N4 N N N 90 DC C5 C N N 91 DC C6 C N N 92 DC HOP3 H N N 93 DC HOP2 H N N 94 DC "H5'" H N N 95 DC "H5''" H N N 96 DC "H4'" H N N 97 DC "H3'" H N N 98 DC "HO3'" H N N 99 DC "H2'" H N N 100 DC "H2''" H N N 101 DC "H1'" H N N 102 DC H41 H N N 103 DC H42 H N N 104 DC H5 H N N 105 DC H6 H N N 106 DG OP3 O N N 107 DG P P N N 108 DG OP1 O N N 109 DG OP2 O N N 110 DG "O5'" O N N 111 DG "C5'" C N N 112 DG "C4'" C N R 113 DG "O4'" O N N 114 DG "C3'" C N S 115 DG "O3'" O N N 116 DG "C2'" C N N 117 DG "C1'" C N R 118 DG N9 N Y N 119 DG C8 C Y N 120 DG N7 N Y N 121 DG C5 C Y N 122 DG C6 C N N 123 DG O6 O N N 124 DG N1 N N N 125 DG C2 C N N 126 DG N2 N N N 127 DG N3 N N N 128 DG C4 C Y N 129 DG HOP3 H N N 130 DG HOP2 H N N 131 DG "H5'" H N N 132 DG "H5''" H N N 133 DG "H4'" H N N 134 DG "H3'" H N N 135 DG "HO3'" H N N 136 DG "H2'" H N N 137 DG "H2''" H N N 138 DG "H1'" H N N 139 DG H8 H N N 140 DG H1 H N N 141 DG H21 H N N 142 DG H22 H N N 143 DT OP3 O N N 144 DT P P N N 145 DT OP1 O N N 146 DT OP2 O N N 147 DT "O5'" O N N 148 DT "C5'" C N N 149 DT "C4'" C N R 150 DT "O4'" O N N 151 DT "C3'" C N S 152 DT "O3'" O N N 153 DT "C2'" C N N 154 DT "C1'" C N R 155 DT N1 N N N 156 DT C2 C N N 157 DT O2 O N N 158 DT N3 N N N 159 DT C4 C N N 160 DT O4 O N N 161 DT C5 C N N 162 DT C7 C N N 163 DT C6 C N N 164 DT HOP3 H N N 165 DT HOP2 H N N 166 DT "H5'" H N N 167 DT "H5''" H N N 168 DT "H4'" H N N 169 DT "H3'" H N N 170 DT "HO3'" H N N 171 DT "H2'" H N N 172 DT "H2''" H N N 173 DT "H1'" H N N 174 DT H3 H N N 175 DT H71 H N N 176 DT H72 H N N 177 DT H73 H N N 178 DT H6 H N N 179 HOH O O N N 180 HOH H1 H N N 181 HOH H2 H N N 182 K K K N N 183 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8RO P OP1 sing N N 1 8RO P OP2 sing N N 2 8RO P "O5'" sing N N 3 8RO "O5'" "C5'" sing N N 4 8RO "C5'" "C4'" sing N N 5 8RO "C4'" "O4'" sing N N 6 8RO "C4'" "C3'" sing N N 7 8RO "O4'" "C1'" sing N N 8 8RO "C3'" "O3'" sing N N 9 8RO "C3'" "C2'" sing N N 10 8RO "C2'" "C1'" sing N N 11 8RO "C1'" N1 sing N N 12 8RO N1 C2 sing N N 13 8RO N1 C6 sing N N 14 8RO C2 O2 doub N N 15 8RO C2 N3 sing N N 16 8RO N3 C4 sing N N 17 8RO N3 S4 sing N N 18 8RO C4 S4 sing N N 19 8RO C4 C5 doub N N 20 8RO C5 C7 sing N N 21 8RO C5 C6 sing N N 22 8RO OP1 H1 sing N N 23 8RO OP2 H2 sing N N 24 8RO "C5'" H3 sing N N 25 8RO "C5'" H4 sing N N 26 8RO "C4'" H5 sing N N 27 8RO "C3'" H6 sing N N 28 8RO "O3'" H7 sing N N 29 8RO "C2'" H8 sing N N 30 8RO "C2'" H9 sing N N 31 8RO "C1'" H10 sing N N 32 8RO C7 H11 sing N N 33 8RO C7 H12 sing N N 34 8RO C7 H13 sing N N 35 8RO C6 H14 sing N N 36 8RO C6 H15 sing N N 37 DA OP3 P sing N N 38 DA OP3 HOP3 sing N N 39 DA P OP1 doub N N 40 DA P OP2 sing N N 41 DA P "O5'" sing N N 42 DA OP2 HOP2 sing N N 43 DA "O5'" "C5'" sing N N 44 DA "C5'" "C4'" sing N N 45 DA "C5'" "H5'" sing N N 46 DA "C5'" "H5''" sing N N 47 DA "C4'" "O4'" sing N N 48 DA "C4'" "C3'" sing N N 49 DA "C4'" "H4'" sing N N 50 DA "O4'" "C1'" sing N N 51 DA "C3'" "O3'" sing N N 52 DA "C3'" "C2'" sing N N 53 DA "C3'" "H3'" sing N N 54 DA "O3'" "HO3'" sing N N 55 DA "C2'" "C1'" sing N N 56 DA "C2'" "H2'" sing N N 57 DA "C2'" "H2''" sing N N 58 DA "C1'" N9 sing N N 59 DA "C1'" "H1'" sing N N 60 DA N9 C8 sing Y N 61 DA N9 C4 sing Y N 62 DA C8 N7 doub Y N 63 DA C8 H8 sing N N 64 DA N7 C5 sing Y N 65 DA C5 C6 sing Y N 66 DA C5 C4 doub Y N 67 DA C6 N6 sing N N 68 DA C6 N1 doub Y N 69 DA N6 H61 sing N N 70 DA N6 H62 sing N N 71 DA N1 C2 sing Y N 72 DA C2 N3 doub Y N 73 DA C2 H2 sing N N 74 DA N3 C4 sing Y N 75 DC OP3 P sing N N 76 DC OP3 HOP3 sing N N 77 DC P OP1 doub N N 78 DC P OP2 sing N N 79 DC P "O5'" sing N N 80 DC OP2 HOP2 sing N N 81 DC "O5'" "C5'" sing N N 82 DC "C5'" "C4'" sing N N 83 DC "C5'" "H5'" sing N N 84 DC "C5'" "H5''" sing N N 85 DC "C4'" "O4'" sing N N 86 DC "C4'" "C3'" sing N N 87 DC "C4'" "H4'" sing N N 88 DC "O4'" "C1'" sing N N 89 DC "C3'" "O3'" sing N N 90 DC "C3'" "C2'" sing N N 91 DC "C3'" "H3'" sing N N 92 DC "O3'" "HO3'" sing N N 93 DC "C2'" "C1'" sing N N 94 DC "C2'" "H2'" sing N N 95 DC "C2'" "H2''" sing N N 96 DC "C1'" N1 sing N N 97 DC "C1'" "H1'" sing N N 98 DC N1 C2 sing N N 99 DC N1 C6 sing N N 100 DC C2 O2 doub N N 101 DC C2 N3 sing N N 102 DC N3 C4 doub N N 103 DC C4 N4 sing N N 104 DC C4 C5 sing N N 105 DC N4 H41 sing N N 106 DC N4 H42 sing N N 107 DC C5 C6 doub N N 108 DC C5 H5 sing N N 109 DC C6 H6 sing N N 110 DG OP3 P sing N N 111 DG OP3 HOP3 sing N N 112 DG P OP1 doub N N 113 DG P OP2 sing N N 114 DG P "O5'" sing N N 115 DG OP2 HOP2 sing N N 116 DG "O5'" "C5'" sing N N 117 DG "C5'" "C4'" sing N N 118 DG "C5'" "H5'" sing N N 119 DG "C5'" "H5''" sing N N 120 DG "C4'" "O4'" sing N N 121 DG "C4'" "C3'" sing N N 122 DG "C4'" "H4'" sing N N 123 DG "O4'" "C1'" sing N N 124 DG "C3'" "O3'" sing N N 125 DG "C3'" "C2'" sing N N 126 DG "C3'" "H3'" sing N N 127 DG "O3'" "HO3'" sing N N 128 DG "C2'" "C1'" sing N N 129 DG "C2'" "H2'" sing N N 130 DG "C2'" "H2''" sing N N 131 DG "C1'" N9 sing N N 132 DG "C1'" "H1'" sing N N 133 DG N9 C8 sing Y N 134 DG N9 C4 sing Y N 135 DG C8 N7 doub Y N 136 DG C8 H8 sing N N 137 DG N7 C5 sing Y N 138 DG C5 C6 sing N N 139 DG C5 C4 doub Y N 140 DG C6 O6 doub N N 141 DG C6 N1 sing N N 142 DG N1 C2 sing N N 143 DG N1 H1 sing N N 144 DG C2 N2 sing N N 145 DG C2 N3 doub N N 146 DG N2 H21 sing N N 147 DG N2 H22 sing N N 148 DG N3 C4 sing N N 149 DT OP3 P sing N N 150 DT OP3 HOP3 sing N N 151 DT P OP1 doub N N 152 DT P OP2 sing N N 153 DT P "O5'" sing N N 154 DT OP2 HOP2 sing N N 155 DT "O5'" "C5'" sing N N 156 DT "C5'" "C4'" sing N N 157 DT "C5'" "H5'" sing N N 158 DT "C5'" "H5''" sing N N 159 DT "C4'" "O4'" sing N N 160 DT "C4'" "C3'" sing N N 161 DT "C4'" "H4'" sing N N 162 DT "O4'" "C1'" sing N N 163 DT "C3'" "O3'" sing N N 164 DT "C3'" "C2'" sing N N 165 DT "C3'" "H3'" sing N N 166 DT "O3'" "HO3'" sing N N 167 DT "C2'" "C1'" sing N N 168 DT "C2'" "H2'" sing N N 169 DT "C2'" "H2''" sing N N 170 DT "C1'" N1 sing N N 171 DT "C1'" "H1'" sing N N 172 DT N1 C2 sing N N 173 DT N1 C6 sing N N 174 DT C2 O2 doub N N 175 DT C2 N3 sing N N 176 DT N3 C4 sing N N 177 DT N3 H3 sing N N 178 DT C4 O4 doub N N 179 DT C4 C5 sing N N 180 DT C5 C7 sing N N 181 DT C5 C6 doub N N 182 DT C7 H71 sing N N 183 DT C7 H72 sing N N 184 DT C7 H73 sing N N 185 DT C6 H6 sing N N 186 HOH O H1 sing N N 187 HOH O H2 sing N N 188 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5XUV 'double helix' 5XUV 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.350 -0.175 -0.065 -0.024 2.249 1.657 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.342 -0.207 0.085 -1.831 -7.026 -3.400 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 -0.015 -0.095 0.300 -7.203 -8.155 1.336 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.397 -0.163 -0.143 5.173 -11.876 1.659 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 -0.194 -0.150 -0.235 -7.719 -13.098 7.078 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 0.215 -0.050 -0.344 14.119 -14.774 9.049 6 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.180 -0.195 0.136 -7.846 -14.190 -0.017 7 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.068 -0.230 0.328 3.976 -4.572 2.983 8 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.152 -0.218 0.305 0.479 -17.698 -2.747 9 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.207 -0.157 0.211 9.533 0.225 0.494 10 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -1.076 -0.486 3.378 -2.323 -2.152 32.941 -0.472 1.478 3.467 -3.784 4.085 33.089 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.579 -0.376 3.423 -0.579 1.894 35.008 -0.921 -1.052 3.389 3.145 0.961 35.062 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.347 0.730 3.189 3.547 11.250 29.878 -0.726 1.274 3.189 20.827 -6.566 32.072 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 0.595 0.082 3.537 2.302 1.226 39.246 -0.036 -0.586 3.566 1.823 -3.423 39.329 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.461 0.078 3.774 -4.197 -1.194 40.753 0.263 0.127 3.798 -1.709 6.005 40.976 5 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.757 0.829 3.155 -0.802 3.613 30.279 0.874 -1.594 3.209 6.885 1.528 30.500 6 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.439 0.584 3.380 -2.397 -5.704 41.919 1.411 1.739 3.350 -7.921 3.328 42.352 7 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.327 0.903 3.193 2.207 -3.014 33.847 2.011 -1.922 3.180 -5.157 -3.777 34.047 8 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _pdbx_audit_support.funding_organization MEXT _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 17H03033 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 8RO ? ? 8RO ? ? 'SUBJECT OF INVESTIGATION' ? 2 AG ? ? AG ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SILVER ION' AG 3 'POTASSIUM ION' K 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4L24 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'assay for oligomerization' _pdbx_struct_assembly_auth_evidence.details ? #