HEADER TRANSFERASE/INHIBITOR 26-JUN-17 5XV7 TITLE SRPK1 IN COMPLEX WITH ALECTINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE-ARGININE (SR) PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS SRPK1, ALECTINIB, SRPKIN-1, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.ZENG,J.C.K.NGO REVDAT 3 22-NOV-23 5XV7 1 REMARK REVDAT 2 02-MAY-18 5XV7 1 JRNL REVDAT 1 14-MAR-18 5XV7 0 JRNL AUTH J.M.HATCHER,G.WU,C.ZENG,J.ZHU,F.MENG,S.PATEL,W.WANG, JRNL AUTH 2 S.B.FICARRO,A.L.LEGGETT,C.E.POWELL,J.A.MARTO,K.ZHANG, JRNL AUTH 3 J.C.KI NGO,X.D.FU,T.ZHANG,N.S.GRAY JRNL TITL SRPKIN-1: A COVALENT SRPK1/2 INHIBITOR THAT POTENTLY JRNL TITL 2 CONVERTS VEGF FROM PRO-ANGIOGENIC TO ANTI-ANGIOGENIC ISOFORM JRNL REF CELL CHEM BIOL V. 25 460 2018 JRNL REFN ESSN 2451-9448 JRNL PMID 29478907 JRNL DOI 10.1016/J.CHEMBIOL.2018.01.013 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 22080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1195 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1589 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2849 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.267 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.147 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.980 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2973 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2899 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4024 ; 1.395 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6676 ; 0.898 ; 3.006 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 5.759 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;33.319 ;24.135 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 529 ;14.690 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.910 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 440 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3245 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 670 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1398 ; 1.913 ; 3.283 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1397 ; 1.911 ; 3.282 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1744 ; 3.046 ; 4.909 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1745 ; 3.045 ; 4.910 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1575 ; 2.674 ; 3.708 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1576 ; 2.673 ; 3.708 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2281 ; 4.435 ; 5.387 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3369 ; 6.090 ;26.614 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3370 ; 6.089 ;26.617 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 655 REMARK 3 ORIGIN FOR THE GROUP (A): 92.6736 17.9198 330.3957 REMARK 3 T TENSOR REMARK 3 T11: 0.0649 T22: 0.0588 REMARK 3 T33: 0.0368 T12: -0.0445 REMARK 3 T13: -0.0116 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.0542 L22: 0.3613 REMARK 3 L33: 0.6511 L12: -0.1066 REMARK 3 L13: 0.0764 L23: -0.2025 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: 0.0306 S13: 0.0067 REMARK 3 S21: 0.0023 S22: -0.1017 S23: 0.0174 REMARK 3 S31: 0.0547 S32: 0.0065 S33: 0.1055 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XV7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300004205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VERTICALLY COLLIMATING REMARK 200 PREMIRROR, LN2-COOLED FIXED-EXIT REMARK 200 DOUBLE CRYSTAL SI(111) REMARK 200 MONOCHROMATOR , TOROIDAL REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 316057 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 63.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1WAK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11% PEG 4000 100MM SODIUM CITRATE (PH REMARK 280 5.6) 200MM AMMONIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 207.12467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 103.56233 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 155.34350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.78117 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 258.90583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 207.12467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 103.56233 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.78117 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 155.34350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 258.90583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP A 455 REMARK 465 GLN A 456 REMARK 465 ARG A 457 REMARK 465 SER A 458 REMARK 465 GLY A 459 REMARK 465 ALA A 460 REMARK 465 PRO A 461 REMARK 465 PRO A 462 REMARK 465 PRO A 463 REMARK 465 SER A 464 REMARK 465 GLY A 465 REMARK 465 SER A 466 REMARK 465 ALA A 467 REMARK 465 VAL A 468 REMARK 465 SER A 469 REMARK 465 THR A 470 REMARK 465 ALA A 471 REMARK 465 PRO A 472 REMARK 465 ALA A 473 REMARK 465 THR A 474 REMARK 465 ALA A 475 REMARK 465 GLY A 476 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 90 NZ LYS A 112 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 578 O GLU A 617 8567 1.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 79 -20.02 -148.61 REMARK 500 LEU A 168 -109.74 -112.02 REMARK 500 THR A 212 -4.15 78.74 REMARK 500 ASP A 213 48.12 -150.50 REMARK 500 ASP A 497 63.97 65.64 REMARK 500 GLN A 513 140.72 73.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 654 SER A 655 149.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EMH A 705 DBREF 5XV7 A 67 655 PDB 5XV7 5XV7 67 655 SEQRES 1 A 372 TYR HIS LEU VAL LYS ILE GLY ASP LEU PHE ASN GLY ARG SEQRES 2 A 372 TYR HIS VAL ILE ARG LYS LEU GLY TRP GLY HIS PHE SER SEQRES 3 A 372 THR VAL TRP LEU SER TRP ASP ILE GLN GLY LYS LYS PHE SEQRES 4 A 372 VAL ALA MET LYS VAL VAL LYS SER ALA GLU HIS TYR THR SEQRES 5 A 372 GLU THR ALA LEU ASP GLU ILE ARG LEU LEU LYS SER VAL SEQRES 6 A 372 ARG ASN SER ASP PRO ASN ASP PRO ASN ARG GLU MET VAL SEQRES 7 A 372 VAL GLN LEU LEU ASP ASP PHE LYS ILE SER GLY VAL ASN SEQRES 8 A 372 GLY THR HIS ILE VAL MET VAL PHE GLU VAL LEU GLY HIS SEQRES 9 A 372 HIS LEU LEU LYS TRP ILE ILE LYS SER ASN TYR GLN GLY SEQRES 10 A 372 LEU PRO LEU PRO CYS VAL LYS LYS ILE ILE GLN GLN VAL SEQRES 11 A 372 LEU GLN GLY LEU ASP TYR LEU HIS THR LYS CYS ARG ILE SEQRES 12 A 372 ILE HIS THR ASP ILE LYS PRO GLU ASN ILE LEU LEU SER SEQRES 13 A 372 VAL ASN GLU GLN TYR ILE ARG ARG LEU ALA ALA GLU ALA SEQRES 14 A 372 THR GLU TRP GLN ARG SER GLY ALA PRO PRO PRO SER GLY SEQRES 15 A 372 SER ALA VAL SER THR ALA PRO ALA THR ALA GLY ASN PHE SEQRES 16 A 372 LEU VAL ASN PRO LEU GLU PRO LYS ASN ALA GLU LYS LEU SEQRES 17 A 372 LYS VAL LYS ILE ALA ASP LEU GLY ASN ALA CYS TRP VAL SEQRES 18 A 372 HIS LYS HIS PHE THR GLU ASP ILE GLN THR ARG GLN TYR SEQRES 19 A 372 ARG SER LEU GLU VAL LEU ILE GLY SER GLY TYR ASN THR SEQRES 20 A 372 PRO ALA ASP ILE TRP SER THR ALA CYS MET ALA PHE GLU SEQRES 21 A 372 LEU ALA THR GLY ASP TYR LEU PHE GLU PRO HIS SER GLY SEQRES 22 A 372 GLU GLU TYR THR ARG ASP GLU ASP HIS ILE ALA LEU ILE SEQRES 23 A 372 ILE GLU LEU LEU GLY LYS VAL PRO ARG LYS LEU ILE VAL SEQRES 24 A 372 ALA GLY LYS TYR SER LYS GLU PHE PHE THR LYS LYS GLY SEQRES 25 A 372 ASP LEU LYS HIS ILE THR LYS LEU LYS PRO TRP GLY LEU SEQRES 26 A 372 PHE GLU VAL LEU VAL GLU LYS TYR GLU TRP SER GLN GLU SEQRES 27 A 372 GLU ALA ALA GLY PHE THR ASP PHE LEU LEU PRO MET LEU SEQRES 28 A 372 GLU LEU ILE PRO GLU LYS ARG ALA THR ALA ALA GLU CYS SEQRES 29 A 372 LEU ARG HIS PRO TRP LEU ASN SER HET EDO A 701 4 HET EDO A 702 4 HET EDO A 703 4 HET EDO A 704 4 HET EMH A 705 36 HETNAM EDO 1,2-ETHANEDIOL HETNAM EMH 9-ETHYL-6,6-DIMETHYL-8-[4-(MORPHOLIN-4-YL)PIPERIDIN-1- HETNAM 2 EMH YL]-11-OXO-6,11-DIHYDRO-5H-BENZO[B]CARBAZOLE-3- HETNAM 3 EMH CARBONITRILE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 4(C2 H6 O2) FORMUL 6 EMH C30 H34 N4 O2 FORMUL 7 HOH *33(H2 O) HELIX 1 AA1 ALA A 114 SER A 134 1 21 HELIX 2 AA2 ASP A 138 VAL A 144 5 7 HELIX 3 AA3 HIS A 171 SER A 179 1 9 HELIX 4 AA4 PRO A 185 LYS A 206 1 22 HELIX 5 AA5 LYS A 215 GLU A 217 5 3 HELIX 6 AA6 ASN A 224 GLU A 237 1 14 HELIX 7 AA7 GLU A 484 LEU A 491 5 8 HELIX 8 AA8 ASP A 497 ALA A 501 5 5 HELIX 9 AA9 THR A 514 ARG A 518 5 5 HELIX 10 AB1 SER A 519 GLY A 525 1 7 HELIX 11 AB2 THR A 530 GLY A 547 1 18 HELIX 12 AB3 THR A 560 GLY A 574 1 15 HELIX 13 AB4 PRO A 577 ALA A 583 1 7 HELIX 14 AB5 TYR A 586 PHE A 591 1 6 HELIX 15 AB6 GLY A 607 LYS A 615 1 9 HELIX 16 AB7 SER A 619 LEU A 631 1 13 HELIX 17 AB8 PRO A 632 GLU A 635 5 4 HELIX 18 AB9 ILE A 637 ARG A 641 5 5 HELIX 19 AC1 THR A 643 ARG A 649 1 7 HELIX 20 AC2 HIS A 650 ASN A 654 5 5 SHEET 1 AA1 6 LEU A 75 PHE A 76 0 SHEET 2 AA1 6 TYR A 80 TRP A 88 -1 O TYR A 80 N PHE A 76 SHEET 3 AA1 6 SER A 92 ASP A 99 -1 O LEU A 96 N ARG A 84 SHEET 4 AA1 6 LYS A 104 VAL A 111 -1 O MET A 108 N TRP A 95 SHEET 5 AA1 6 THR A 159 PHE A 165 -1 O MET A 163 N LYS A 109 SHEET 6 AA1 6 LEU A 147 SER A 154 -1 N LEU A 148 O VAL A 164 SHEET 1 AA2 2 ILE A 209 ILE A 210 0 SHEET 2 AA2 2 CYS A 502 TRP A 503 -1 O CYS A 502 N ILE A 210 SHEET 1 AA3 2 ILE A 219 LEU A 221 0 SHEET 2 AA3 2 VAL A 493 ILE A 495 -1 O LYS A 494 N LEU A 220 SITE 1 AC1 4 ASP A 138 ASN A 140 ASP A 201 TYR A 202 SITE 1 AC2 4 ASP A 511 ILE A 512 GLN A 513 ARG A 561 SITE 1 AC3 3 HIS A 170 LYS A 174 EMH A 705 SITE 1 AC4 6 HIS A 507 THR A 509 GLU A 510 TYR A 528 SITE 2 AC4 6 HOH A 801 HOH A 818 SITE 1 AC5 14 ARG A 84 LEU A 86 ALA A 107 PHE A 165 SITE 2 AC5 14 VAL A 167 LEU A 168 GLY A 169 HIS A 170 SITE 3 AC5 14 LEU A 220 TYR A 227 LEU A 231 ASP A 497 SITE 4 AC5 14 EDO A 703 HOH A 812 CRYST1 74.767 74.767 310.687 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013375 0.007722 0.000000 0.00000 SCALE2 0.000000 0.015444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003219 0.00000