HEADER RNA BINDING PROTEIN 27-JUN-17 5XV9 TITLE SOLUTION STRUCTURE OF COLD SHOCK PROTEIN FROM COLWELLIA TITLE 2 PSYCHRERYTHRAEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLD-SHOCK DNA-BINDING DOMAIN FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COLWELLIA PSYCHRERYTHRAEA (STRAIN 34H / ATCC SOURCE 3 BAA-681); SOURCE 4 ORGANISM_COMMON: VIBRIO PSYCHROERYTHUS; SOURCE 5 ORGANISM_TAXID: 167879; SOURCE 6 STRAIN: 34H / ATCC BAA-681; SOURCE 7 GENE: CPS_0718; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS COLD-SHOCK PROTEIN, PSYCHROPHILE, NMR SPECTROSCOPY, SOLUTION KEYWDS 2 STRUCTURE, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.LEE,Y.KIM REVDAT 4 15-MAY-24 5XV9 1 REMARK REVDAT 3 14-JUN-23 5XV9 1 REMARK REVDAT 2 31-JUL-19 5XV9 1 JRNL REVDAT 1 04-JUL-18 5XV9 0 JRNL AUTH Y.LEE,C.KWAK,K.W.JEONG,P.DURAI,K.S.RYU,E.H.KIM,C.CHEONG, JRNL AUTH 2 H.C.AHN,H.J.KIM,Y.KIM JRNL TITL TYR51: KEY DETERMINANT OF THE LOW THERMOSTABILITY OF THE JRNL TITL 2 COLWELLIA PSYCHRERYTHRAEA COLD-SHOCK PROTEIN. JRNL REF BIOCHEMISTRY V. 57 3625 2018 JRNL REFN ISSN 0006-2960 JRNL PMID 29737840 JRNL DOI 10.1021/ACS.BIOCHEM.8B00144 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.JIN,K.W.JEONG,Y.KIM REMARK 1 TITL STRUCTURE AND FLEXIBILITY OF THE THERMOPHILIC COLD-SHOCK REMARK 1 TITL 2 PROTEIN OF THERMUS AQUATICUS REMARK 1 REF BIOCHEM. BIOPHYS. RES. V. 451 402 2014 REMARK 1 REF 2 COMMUN. REMARK 1 REFN ESSN 1090-2104 REMARK 1 PMID 25101648 REMARK 1 DOI 10.1016/J.BBRC.2014.07.127 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.LEE,K.W.JEONG,B.JIN,K.S.RYU,E.H.KIM,J.H.AHN,Y.KIM REMARK 1 TITL STRUCTURAL AND DYNAMIC FEATURES OF COLD-SHOCK PROTEINS OF REMARK 1 TITL 2 LISTERIA MONOCYTOGENES, A PSYCHROPHILIC BACTERIUM REMARK 1 REF BIOCHEMISTRY V. 52 2492 2013 REMARK 1 REFN ISSN 1520-4995 REMARK 1 PMID 23506337 REMARK 1 DOI 10.1021/BI301641B REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PONDEROSA-C/S REMARK 3 AUTHORS : LEE, CORNILESCU, DASHTI, EGHBALNIA, TONELLI, REMARK 3 WESTLER, BUTCHER, WILDMAN-HENZLER AND MARKLEY REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300004230. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 15N] COLWELLIA REMARK 210 PSYCHRERYTHRAEA COLD SHOCK REMARK 210 PROTEIN, 50 MM POTASSIUM REMARK 210 PHOSPHATE, 100 MM POTASSIUM REMARK 210 CHLORIDE, 0.1 MM EDTA, 2 MM DTT, REMARK 210 50 NM DSS, 0.5 MG/ML SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O; 0.5 MM REMARK 210 [U-99% 13C; U-99% 15N] COLWELLIA REMARK 210 PSYCHRERYTHRAEA COLD SHOCK REMARK 210 PROTEIN, 50 MM POTASSIUM REMARK 210 PHOSPHATE, 100 MM POTASSIUM REMARK 210 CHLORIDE, 0.1 MM EDTA, 2 MM DTT, REMARK 210 50 NM DSS, 0.5 MG/ML SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O; 0.5 MM REMARK 210 [U-99% 15N] COLWELLIA REMARK 210 PSYCHRERYTHRAEA COLD SHOCK REMARK 210 PROTEIN, 50 MM POTASSIUM REMARK 210 PHOSPHATE, 100 MM POTASSIUM REMARK 210 CHLORIDE, 0.1 MM EDTA, 2 MM DTT, REMARK 210 50 NM DSS, 0.5 MG/ML SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O; 0.5 MM REMARK 210 COLWELLIA PSYCHRERYTHRAEA COLD REMARK 210 SHOCK PROTEIN, 50 MM POTASSIUM REMARK 210 PHOSPHATE, 100 MM POTASSIUM REMARK 210 CHLORIDE, 0.1 MM EDTA, 2 MM DTT, REMARK 210 50 NM DSS, 0.5 MG/ML SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D C(CO)NH; 3D HBHA(CO)NH; REMARK 210 3D H(CCO)NH; 3D HCCH-TOCSY; 2D REMARK 210 1H-1H TOCSY; 2D 1H-1H NOESY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 2D 1H-15N HSQC- REMARK 210 DSSE(IPAP) REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRFAM-SPARKY, X-PLOR REMARK 210 NIH REMARK 210 METHOD USED : NA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 44 -153.65 -146.15 REMARK 500 2 SER A 36 -168.11 58.83 REMARK 500 2 ALA A 44 -147.61 -145.97 REMARK 500 3 ALA A 44 -152.65 -145.67 REMARK 500 4 ALA A 44 -155.39 -145.17 REMARK 500 5 ALA A 44 -149.44 -145.92 REMARK 500 6 ALA A 44 -150.75 -145.77 REMARK 500 7 ALA A 44 -157.69 -145.46 REMARK 500 8 ALA A 44 -152.56 -145.29 REMARK 500 9 ALA A 44 -151.44 -146.27 REMARK 500 10 ALA A 44 -151.46 -145.98 REMARK 500 11 ALA A 44 -149.47 -145.70 REMARK 500 12 ALA A 44 -157.85 -145.35 REMARK 500 13 ALA A 44 -151.62 -145.76 REMARK 500 14 SER A 36 164.28 57.53 REMARK 500 14 ALA A 44 -156.07 -145.38 REMARK 500 15 ALA A 44 -157.19 -145.58 REMARK 500 16 ALA A 44 -153.40 -145.35 REMARK 500 17 SER A 36 -67.45 -176.04 REMARK 500 17 ALA A 44 -147.18 -145.21 REMARK 500 18 ALA A 44 -149.83 -145.52 REMARK 500 19 SER A 2 90.67 54.79 REMARK 500 19 ALA A 44 -151.92 -146.08 REMARK 500 20 ALA A 44 -146.70 -145.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36102 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF COLD SHOCK PROTEIN FROM COLWELLIA REMARK 900 PSYCHRERYTHRAEA DBREF 5XV9 A 1 68 UNP Q488P6 Q488P6_COLP3 1 68 SEQRES 1 A 68 MET SER LYS GLY ILE VAL LYS TRP PHE ASN SER ASP LYS SEQRES 2 A 68 GLY PHE GLY PHE ILE THR PRO GLU ASP GLY SER LYS ASP SEQRES 3 A 68 LEU PHE VAL HIS HIS SER GLU ILE GLN SER GLY GLY GLU SEQRES 4 A 68 TYR ALA THR LEU ALA ASP GLY GLN THR VAL GLU TYR GLU SEQRES 5 A 68 VAL GLY GLN GLY GLN LYS GLY PRO CYS ALA ASN LYS VAL SEQRES 6 A 68 VAL ALA VAL HELIX 1 AA1 SER A 32 ILE A 34 5 3 SHEET 1 AA1 6 LYS A 3 ASN A 10 0 SHEET 2 AA1 6 PHE A 15 THR A 19 -1 O THR A 19 N ILE A 5 SHEET 3 AA1 6 LEU A 27 HIS A 30 -1 O VAL A 29 N GLY A 16 SHEET 4 AA1 6 CYS A 61 ALA A 67 1 O ALA A 62 N PHE A 28 SHEET 5 AA1 6 THR A 48 GLY A 54 -1 N GLY A 54 O CYS A 61 SHEET 6 AA1 6 LYS A 3 ASN A 10 -1 N GLY A 4 O VAL A 49 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1