HEADER TRANSFERASE 28-JUN-17 5XVR TITLE EARP BOUND WITH DTDP-RHAMNOSE (CO-CRYSTAL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EARP; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS H44/76; SOURCE 3 ORGANISM_TAXID: 909420; SOURCE 4 STRAIN: H44/76; SOURCE 5 GENE: NMH_0797; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PLASMID KEYWDS GLYCOSYLTRANSFERASE, GT-B, EF-P, RHAMNOSYLATION, TRANSLATION KEYWDS 2 ELONGATION, DTDP-RHAMNOSE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.SENGOKU,S.YOKOYAMA,T.YANAGISAWA REVDAT 3 27-MAR-24 5XVR 1 REMARK REVDAT 2 04-APR-18 5XVR 1 JRNL REVDAT 1 28-FEB-18 5XVR 0 JRNL AUTH T.SENGOKU,T.SUZUKI,N.DOHMAE,C.WATANABE,T.HONMA,Y.HIKIDA, JRNL AUTH 2 Y.YAMAGUCHI,H.TAKAHASHI,S.YOKOYAMA,T.YANAGISAWA JRNL TITL STRUCTURAL BASIS OF PROTEIN ARGININE RHAMNOSYLATION BY JRNL TITL 2 GLYCOSYLTRANSFERASE EARP JRNL REF NAT. CHEM. BIOL. V. 14 368 2018 JRNL REFN ESSN 1552-4469 JRNL PMID 29440735 JRNL DOI 10.1038/S41589-018-0002-Y REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 110028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.370 REMARK 3 FREE R VALUE TEST SET COUNT : 2603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8194 - 4.3485 1.00 6108 150 0.1505 0.1727 REMARK 3 2 4.3485 - 3.4518 1.00 5862 144 0.1365 0.1665 REMARK 3 3 3.4518 - 3.0156 1.00 5794 142 0.1595 0.1917 REMARK 3 4 3.0156 - 2.7399 1.00 5710 141 0.1709 0.2444 REMARK 3 5 2.7399 - 2.5435 1.00 5717 141 0.1694 0.1842 REMARK 3 6 2.5435 - 2.3936 0.99 5672 137 0.1685 0.2006 REMARK 3 7 2.3936 - 2.2737 0.99 5676 135 0.1586 0.1871 REMARK 3 8 2.2737 - 2.1747 0.99 5641 140 0.1536 0.1865 REMARK 3 9 2.1747 - 2.0910 0.99 5630 139 0.1602 0.2158 REMARK 3 10 2.0910 - 2.0188 0.99 5587 137 0.1633 0.2086 REMARK 3 11 2.0188 - 1.9557 0.99 5629 139 0.1761 0.2511 REMARK 3 12 1.9557 - 1.8998 0.99 5593 139 0.1740 0.2290 REMARK 3 13 1.8998 - 1.8498 0.98 5532 137 0.1878 0.2444 REMARK 3 14 1.8498 - 1.8047 0.99 5593 132 0.1894 0.2131 REMARK 3 15 1.8047 - 1.7636 0.98 5551 145 0.2039 0.2449 REMARK 3 16 1.7636 - 1.7261 0.98 5523 134 0.2180 0.2866 REMARK 3 17 1.7261 - 1.6916 0.98 5577 116 0.2391 0.2635 REMARK 3 18 1.6916 - 1.6596 0.98 5483 123 0.2658 0.2868 REMARK 3 19 1.6596 - 1.6300 0.98 5547 132 0.2897 0.3284 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6554 REMARK 3 ANGLE : 1.120 8970 REMARK 3 CHIRALITY : 0.071 940 REMARK 3 PLANARITY : 0.007 1154 REMARK 3 DIHEDRAL : 7.368 5260 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3156 73.6024 6.1723 REMARK 3 T TENSOR REMARK 3 T11: 0.1386 T22: 0.1661 REMARK 3 T33: 0.2496 T12: 0.0109 REMARK 3 T13: 0.0438 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.7424 L22: 2.5451 REMARK 3 L33: 2.2770 L12: -0.1919 REMARK 3 L13: -0.4124 L23: 0.0108 REMARK 3 S TENSOR REMARK 3 S11: 0.0942 S12: 0.0500 S13: 0.2605 REMARK 3 S21: -0.0906 S22: 0.0629 S23: 0.0464 REMARK 3 S31: -0.1202 S32: -0.1053 S33: -0.1141 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0616 74.4940 21.5800 REMARK 3 T TENSOR REMARK 3 T11: 0.1648 T22: 0.1819 REMARK 3 T33: 0.2708 T12: 0.0368 REMARK 3 T13: 0.0226 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 1.6779 L22: 8.0815 REMARK 3 L33: 1.6873 L12: 2.5439 REMARK 3 L13: 0.6897 L23: 0.9838 REMARK 3 S TENSOR REMARK 3 S11: 0.0472 S12: -0.0541 S13: 0.2178 REMARK 3 S21: 0.2283 S22: 0.0717 S23: -0.2688 REMARK 3 S31: 0.0239 S32: -0.0017 S33: -0.1311 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0268 95.0706 19.0905 REMARK 3 T TENSOR REMARK 3 T11: 0.2011 T22: 0.1522 REMARK 3 T33: 0.2721 T12: 0.0066 REMARK 3 T13: 0.0624 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.8920 L22: 1.9458 REMARK 3 L33: 0.4354 L12: -0.3435 REMARK 3 L13: 0.1064 L23: -0.2365 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: -0.0321 S13: 0.1746 REMARK 3 S21: 0.0768 S22: 0.0773 S23: -0.0680 REMARK 3 S31: -0.0891 S32: 0.0069 S33: -0.1131 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0074 57.9346 3.2974 REMARK 3 T TENSOR REMARK 3 T11: 0.1508 T22: 0.1911 REMARK 3 T33: 0.2056 T12: 0.0320 REMARK 3 T13: -0.0253 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.2519 L22: 4.1502 REMARK 3 L33: 3.1314 L12: -0.3125 REMARK 3 L13: 1.0398 L23: 0.4292 REMARK 3 S TENSOR REMARK 3 S11: 0.1078 S12: 0.1628 S13: -0.0323 REMARK 3 S21: -0.3410 S22: -0.0071 S23: 0.0660 REMARK 3 S31: 0.0708 S32: -0.0190 S33: -0.0975 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3009 36.1088 6.8091 REMARK 3 T TENSOR REMARK 3 T11: 0.1363 T22: 0.1368 REMARK 3 T33: 0.1292 T12: -0.0076 REMARK 3 T13: -0.0041 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.6861 L22: 1.0809 REMARK 3 L33: 0.7778 L12: -0.1810 REMARK 3 L13: -0.0734 L23: 0.4858 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: -0.0289 S13: -0.0135 REMARK 3 S21: 0.0443 S22: -0.0185 S23: 0.0980 REMARK 3 S31: 0.0100 S32: -0.0158 S33: 0.0329 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XVR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004259. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110150 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 48.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 21.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% TACSIMATE PH 6.0, 12% PEG6000, 0.2M REMARK 280 LITHIUM SULFATE, 10MM DTDP-RHAMNOSE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.69500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 97.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.69500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 97.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 380 REMARK 465 ILE A 381 REMARK 465 ARG A 382 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASN B 17 REMARK 465 GLN B 379 REMARK 465 LYS B 380 REMARK 465 ILE B 381 REMARK 465 ARG B 382 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 359 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 33 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 147 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 872 O HOH A 880 2.08 REMARK 500 O HOH B 601 O HOH B 909 2.13 REMARK 500 O HOH A 508 O HOH A 856 2.16 REMARK 500 O HOH A 589 O HOH A 764 2.17 REMARK 500 OE1 GLU B 329 O HOH B 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 18 -36.21 -153.92 REMARK 500 ASN A 20 -29.84 75.54 REMARK 500 ALA A 75 145.85 -171.26 REMARK 500 ASN A 178 15.69 -143.01 REMARK 500 ALA A 240 -128.02 50.35 REMARK 500 ASN B 20 -42.40 71.03 REMARK 500 ASN B 178 12.21 -140.17 REMARK 500 ALA B 240 -135.03 49.61 REMARK 500 GLU B 270 -51.04 -123.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRH A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRH B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WXI RELATED DB: PDB REMARK 900 RELATED ID: 5WXK RELATED DB: PDB REMARK 900 RELATED ID: 5WXJ RELATED DB: PDB DBREF 5XVR A 1 382 UNP E6MVV9 E6MVV9_NEIMH 1 382 DBREF 5XVR B 1 382 UNP E6MVV9 E6MVV9_NEIMH 1 382 SEQADV 5XVR SER A -1 UNP E6MVV9 EXPRESSION TAG SEQADV 5XVR HIS A 0 UNP E6MVV9 EXPRESSION TAG SEQADV 5XVR ASN A 20 UNP E6MVV9 ASP 20 ENGINEERED MUTATION SEQADV 5XVR SER B -1 UNP E6MVV9 EXPRESSION TAG SEQADV 5XVR HIS B 0 UNP E6MVV9 EXPRESSION TAG SEQADV 5XVR ASN B 20 UNP E6MVV9 ASP 20 ENGINEERED MUTATION SEQRES 1 A 384 SER HIS MET ASN THR PRO PRO PHE VAL CYS TRP ILE PHE SEQRES 2 A 384 CYS LYS VAL ILE ASP ASN PHE GLY ASN ILE GLY VAL SER SEQRES 3 A 384 TRP ARG LEU ALA ARG VAL LEU HIS ARG GLU LEU GLY TRP SEQRES 4 A 384 GLN VAL HIS LEU TRP THR ASP ASP VAL SER ALA LEU ARG SEQRES 5 A 384 ALA LEU CYS PRO ASP LEU PRO ASP VAL PRO CYS VAL HIS SEQRES 6 A 384 GLN ASP ILE HIS VAL ARG THR TRP HIS SER ASP ALA ALA SEQRES 7 A 384 ASP ILE ASP THR ALA PRO VAL PRO ASP VAL VAL ILE GLU SEQRES 8 A 384 THR PHE ALA CYS ASP LEU PRO GLU ASN VAL LEU HIS ILE SEQRES 9 A 384 ILE ARG ARG HIS LYS PRO LEU TRP LEU ASN TRP GLU TYR SEQRES 10 A 384 LEU SER ALA GLU GLU SER ASN GLU ARG LEU HIS LEU MET SEQRES 11 A 384 PRO SER PRO GLN GLU GLY VAL GLN LYS TYR PHE TRP PHE SEQRES 12 A 384 MET GLY PHE SER GLU LYS SER GLY GLY LEU ILE ARG GLU SEQRES 13 A 384 ARG ASP TYR CYS GLU ALA VAL ARG PHE ASP THR GLU ALA SEQRES 14 A 384 LEU ARG GLU ARG LEU MET LEU PRO GLU LYS ASN ALA SER SEQRES 15 A 384 GLU TRP LEU LEU PHE GLY TYR ARG SER ASP VAL TRP ALA SEQRES 16 A 384 LYS TRP LEU GLU MET TRP ARG GLN ALA GLY SER PRO MET SEQRES 17 A 384 THR LEU LEU LEU ALA GLY THR GLN ILE ILE ASP SER LEU SEQRES 18 A 384 LYS GLN SER GLY VAL ILE PRO GLN ASP ALA LEU GLN ASN SEQRES 19 A 384 ASP GLY ASP VAL PHE GLN THR ALA SER VAL ARG LEU VAL SEQRES 20 A 384 LYS ILE PRO PHE VAL PRO GLN GLN ASP PHE ASP GLN LEU SEQRES 21 A 384 LEU HIS LEU ALA ASP CYS ALA VAL ILE ARG GLY GLU ASP SEQRES 22 A 384 SER PHE VAL ARG ALA GLN LEU ALA GLY LYS PRO PHE PHE SEQRES 23 A 384 TRP HIS ILE TYR PRO GLN ASP GLU ASN VAL HIS LEU ASP SEQRES 24 A 384 LYS LEU HIS ALA PHE TRP ASP LYS ALA HIS GLY PHE TYR SEQRES 25 A 384 THR PRO GLU THR VAL SER ALA HIS ARG ARG LEU SER ASP SEQRES 26 A 384 ASP LEU ASN GLY GLY GLU ALA LEU SER ALA THR GLN ARG SEQRES 27 A 384 LEU GLU CYS TRP GLN THR LEU GLN GLN HIS GLN ASN GLY SEQRES 28 A 384 TRP ARG GLN GLY ALA GLU ASP TRP SER ARG TYR LEU PHE SEQRES 29 A 384 GLY GLN PRO SER ALA PRO GLU LYS LEU ALA ALA PHE VAL SEQRES 30 A 384 SER LYS HIS GLN LYS ILE ARG SEQRES 1 B 384 SER HIS MET ASN THR PRO PRO PHE VAL CYS TRP ILE PHE SEQRES 2 B 384 CYS LYS VAL ILE ASP ASN PHE GLY ASN ILE GLY VAL SER SEQRES 3 B 384 TRP ARG LEU ALA ARG VAL LEU HIS ARG GLU LEU GLY TRP SEQRES 4 B 384 GLN VAL HIS LEU TRP THR ASP ASP VAL SER ALA LEU ARG SEQRES 5 B 384 ALA LEU CYS PRO ASP LEU PRO ASP VAL PRO CYS VAL HIS SEQRES 6 B 384 GLN ASP ILE HIS VAL ARG THR TRP HIS SER ASP ALA ALA SEQRES 7 B 384 ASP ILE ASP THR ALA PRO VAL PRO ASP VAL VAL ILE GLU SEQRES 8 B 384 THR PHE ALA CYS ASP LEU PRO GLU ASN VAL LEU HIS ILE SEQRES 9 B 384 ILE ARG ARG HIS LYS PRO LEU TRP LEU ASN TRP GLU TYR SEQRES 10 B 384 LEU SER ALA GLU GLU SER ASN GLU ARG LEU HIS LEU MET SEQRES 11 B 384 PRO SER PRO GLN GLU GLY VAL GLN LYS TYR PHE TRP PHE SEQRES 12 B 384 MET GLY PHE SER GLU LYS SER GLY GLY LEU ILE ARG GLU SEQRES 13 B 384 ARG ASP TYR CYS GLU ALA VAL ARG PHE ASP THR GLU ALA SEQRES 14 B 384 LEU ARG GLU ARG LEU MET LEU PRO GLU LYS ASN ALA SER SEQRES 15 B 384 GLU TRP LEU LEU PHE GLY TYR ARG SER ASP VAL TRP ALA SEQRES 16 B 384 LYS TRP LEU GLU MET TRP ARG GLN ALA GLY SER PRO MET SEQRES 17 B 384 THR LEU LEU LEU ALA GLY THR GLN ILE ILE ASP SER LEU SEQRES 18 B 384 LYS GLN SER GLY VAL ILE PRO GLN ASP ALA LEU GLN ASN SEQRES 19 B 384 ASP GLY ASP VAL PHE GLN THR ALA SER VAL ARG LEU VAL SEQRES 20 B 384 LYS ILE PRO PHE VAL PRO GLN GLN ASP PHE ASP GLN LEU SEQRES 21 B 384 LEU HIS LEU ALA ASP CYS ALA VAL ILE ARG GLY GLU ASP SEQRES 22 B 384 SER PHE VAL ARG ALA GLN LEU ALA GLY LYS PRO PHE PHE SEQRES 23 B 384 TRP HIS ILE TYR PRO GLN ASP GLU ASN VAL HIS LEU ASP SEQRES 24 B 384 LYS LEU HIS ALA PHE TRP ASP LYS ALA HIS GLY PHE TYR SEQRES 25 B 384 THR PRO GLU THR VAL SER ALA HIS ARG ARG LEU SER ASP SEQRES 26 B 384 ASP LEU ASN GLY GLY GLU ALA LEU SER ALA THR GLN ARG SEQRES 27 B 384 LEU GLU CYS TRP GLN THR LEU GLN GLN HIS GLN ASN GLY SEQRES 28 B 384 TRP ARG GLN GLY ALA GLU ASP TRP SER ARG TYR LEU PHE SEQRES 29 B 384 GLY GLN PRO SER ALA PRO GLU LYS LEU ALA ALA PHE VAL SEQRES 30 B 384 SER LYS HIS GLN LYS ILE ARG HET TRH A 401 35 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET TRH B 401 35 HET SO4 B 402 5 HET SO4 B 403 5 HETNAM TRH 2'-DEOXY-THYMIDINE-BETA-L-RHAMNOSE HETNAM SO4 SULFATE ION FORMUL 3 TRH 2(C16 H26 N2 O15 P2) FORMUL 4 SO4 5(O4 S 2-) FORMUL 10 HOH *950(H2 O) HELIX 1 AA1 ASN A 20 GLY A 36 1 17 HELIX 2 AA2 ASP A 45 CYS A 53 1 9 HELIX 3 AA3 PRO A 96 LYS A 107 1 12 HELIX 4 AA4 GLU A 119 HIS A 126 1 8 HELIX 5 AA5 ASP A 156 VAL A 161 1 6 HELIX 6 AA6 ASP A 164 LEU A 172 1 9 HELIX 7 AA7 ASP A 190 GLY A 203 1 14 HELIX 8 AA8 THR A 213 SER A 222 1 10 HELIX 9 AA9 PRO A 251 GLN A 253 5 3 HELIX 10 AB1 ASP A 254 ALA A 262 1 9 HELIX 11 AB2 GLU A 270 GLY A 280 1 11 HELIX 12 AB3 GLN A 290 VAL A 294 5 5 HELIX 13 AB4 HIS A 295 HIS A 307 1 13 HELIX 14 AB5 GLY A 308 TYR A 310 5 3 HELIX 15 AB6 THR A 311 ASN A 326 1 16 HELIX 16 AB7 SER A 332 HIS A 346 1 15 HELIX 17 AB8 HIS A 346 GLY A 363 1 18 HELIX 18 AB9 SER A 366 HIS A 378 1 13 HELIX 19 AC1 ASN B 20 GLY B 36 1 17 HELIX 20 AC2 ASP B 45 CYS B 53 1 9 HELIX 21 AC3 PRO B 96 LYS B 107 1 12 HELIX 22 AC4 GLU B 119 HIS B 126 1 8 HELIX 23 AC5 ASP B 156 VAL B 161 1 6 HELIX 24 AC6 ASP B 164 LEU B 172 1 9 HELIX 25 AC7 ASP B 190 GLY B 203 1 14 HELIX 26 AC8 THR B 213 SER B 222 1 10 HELIX 27 AC9 PRO B 251 GLN B 253 5 3 HELIX 28 AD1 ASP B 254 ALA B 262 1 9 HELIX 29 AD2 GLU B 270 GLY B 280 1 11 HELIX 30 AD3 GLN B 290 VAL B 294 5 5 HELIX 31 AD4 HIS B 295 HIS B 307 1 13 HELIX 32 AD5 GLY B 308 TYR B 310 5 3 HELIX 33 AD6 THR B 314 ASN B 326 1 13 HELIX 34 AD7 SER B 332 HIS B 346 1 15 HELIX 35 AD8 HIS B 346 GLY B 363 1 18 HELIX 36 AD9 SER B 366 HIS B 378 1 13 SHEET 1 AA1 3 CYS A 61 HIS A 63 0 SHEET 2 AA1 3 ILE A 66 HIS A 72 -1 O VAL A 68 N CYS A 61 SHEET 3 AA1 3 ALA A 75 ALA A 76 -1 O ALA A 75 N HIS A 72 SHEET 1 AA2 8 CYS A 61 HIS A 63 0 SHEET 2 AA2 8 ILE A 66 HIS A 72 -1 O VAL A 68 N CYS A 61 SHEET 3 AA2 8 GLN A 38 THR A 43 1 N VAL A 39 O HIS A 67 SHEET 4 AA2 8 VAL A 7 CYS A 12 1 N ILE A 10 O TRP A 42 SHEET 5 AA2 8 VAL A 86 GLU A 89 1 O ILE A 88 N TRP A 9 SHEET 6 AA2 8 LEU A 109 TRP A 113 1 O TRP A 113 N GLU A 89 SHEET 7 AA2 8 VAL A 135 TRP A 140 1 O TYR A 138 N ASN A 112 SHEET 8 AA2 8 PRO A 129 GLN A 132 -1 N GLN A 132 O VAL A 135 SHEET 1 AA3 6 VAL A 236 THR A 239 0 SHEET 2 AA3 6 VAL A 242 LYS A 246 -1 O LEU A 244 N PHE A 237 SHEET 3 AA3 6 MET A 206 LEU A 210 1 N LEU A 208 O ARG A 243 SHEET 4 AA3 6 SER A 180 LEU A 184 1 N TRP A 182 O LEU A 209 SHEET 5 AA3 6 CYS A 264 ARG A 268 1 O VAL A 266 N LEU A 183 SHEET 6 AA3 6 PHE A 283 HIS A 286 1 O HIS A 286 N ILE A 267 SHEET 1 AA4 3 CYS B 61 HIS B 63 0 SHEET 2 AA4 3 ILE B 66 HIS B 72 -1 O VAL B 68 N CYS B 61 SHEET 3 AA4 3 ALA B 75 ALA B 76 -1 O ALA B 75 N HIS B 72 SHEET 1 AA5 8 CYS B 61 HIS B 63 0 SHEET 2 AA5 8 ILE B 66 HIS B 72 -1 O VAL B 68 N CYS B 61 SHEET 3 AA5 8 GLN B 38 THR B 43 1 N LEU B 41 O HIS B 67 SHEET 4 AA5 8 VAL B 7 CYS B 12 1 N ILE B 10 O TRP B 42 SHEET 5 AA5 8 VAL B 86 THR B 90 1 O ILE B 88 N TRP B 9 SHEET 6 AA5 8 LEU B 109 TRP B 113 1 O LEU B 109 N VAL B 87 SHEET 7 AA5 8 VAL B 135 TRP B 140 1 O TYR B 138 N ASN B 112 SHEET 8 AA5 8 PRO B 129 GLN B 132 -1 N GLN B 132 O VAL B 135 SHEET 1 AA6 6 VAL B 236 THR B 239 0 SHEET 2 AA6 6 VAL B 242 LYS B 246 -1 O LEU B 244 N PHE B 237 SHEET 3 AA6 6 MET B 206 LEU B 210 1 N LEU B 210 O VAL B 245 SHEET 4 AA6 6 GLU B 181 LEU B 184 1 N TRP B 182 O LEU B 209 SHEET 5 AA6 6 CYS B 264 ARG B 268 1 O VAL B 266 N LEU B 183 SHEET 6 AA6 6 PHE B 283 HIS B 286 1 O HIS B 286 N ILE B 267 CISPEP 1 VAL A 59 PRO A 60 0 6.37 CISPEP 2 VAL B 59 PRO B 60 0 4.45 SITE 1 AC1 22 PHE A 18 GLY A 19 ASN A 20 LEU A 52 SITE 2 AC1 22 TYR A 115 TYR A 187 ALA A 211 PHE A 249 SITE 3 AC1 22 VAL A 250 GLN A 252 PHE A 255 ARG A 268 SITE 4 AC1 22 GLY A 269 GLU A 270 ASP A 271 SER A 272 SITE 5 AC1 22 HOH A 605 HOH A 606 HOH A 631 HOH A 632 SITE 6 AC1 22 HOH A 638 HOH A 774 SITE 1 AC2 5 HIS A 346 ASN A 348 GLY A 349 HOH A 514 SITE 2 AC2 5 HOH A 546 SITE 1 AC3 7 ARG A 200 THR A 239 ALA A 240 HOH A 501 SITE 2 AC3 7 HOH A 553 HOH A 762 ARG B 200 SITE 1 AC4 6 PHE A 185 GLY A 212 THR A 213 GLN A 214 SITE 2 AC4 6 ARG A 268 HOH A 644 SITE 1 AC5 22 PHE B 18 GLY B 19 ASN B 20 LEU B 52 SITE 2 AC5 22 TYR B 115 TYR B 187 PHE B 249 VAL B 250 SITE 3 AC5 22 GLN B 252 PHE B 255 ARG B 268 GLY B 269 SITE 4 AC5 22 GLU B 270 ASP B 271 SER B 272 TYR B 288 SITE 5 AC5 22 HOH B 538 HOH B 548 HOH B 683 HOH B 693 SITE 6 AC5 22 HOH B 698 HOH B 784 SITE 1 AC6 8 PHE B 18 GLY B 212 THR B 213 GLN B 214 SITE 2 AC6 8 ARG B 268 HOH B 532 HOH B 728 HOH B 832 SITE 1 AC7 7 HIS B 346 ASN B 348 GLY B 349 HOH B 510 SITE 2 AC7 7 HOH B 543 HOH B 561 HOH B 562 CRYST1 97.390 195.190 46.320 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010268 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021589 0.00000