HEADER OXIDOREDUCTASE 28-JUN-17 5XW0 TITLE CRYSTAL STRUCTURE OF ASPERGILLUS NIGER GLUTAMATE DEHYDROGENASE TITLE 2 COMPLEXED WITH ISOPHTHALATE AND NADPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIGER; SOURCE 3 ORGANISM_TAXID: 5061; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI-THERMUS THERMOPHILUS SHUTTLE SOURCE 5 VECTOR PTRH1T; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1085940 KEYWDS ASPERGILLUS, GLUTAMATE, DEHYDROGENASE, ISOPHTHALATE, INHIBITION, KEYWDS 2 NADPH, COENZYME, REACTION MECHANISM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.PRAKASH,N.S.PUNEKAR,P.BHAUMIK REVDAT 4 27-MAR-24 5XW0 1 REMARK REVDAT 3 09-MAY-18 5XW0 1 JRNL REVDAT 2 28-MAR-18 5XW0 1 JRNL REVDAT 1 21-MAR-18 5XW0 0 JRNL AUTH P.PRAKASH,N.S.PUNEKAR,P.BHAUMIK JRNL TITL STRUCTURAL BASIS FOR THE CATALYTIC MECHANISM AND JRNL TITL 2 ALPHA-KETOGLUTARATE COOPERATIVITY OF GLUTAMATE JRNL TITL 3 DEHYDROGENASE. JRNL REF J. BIOL. CHEM. V. 293 6241 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29540480 JRNL DOI 10.1074/JBC.RA117.000149 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 103738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5460 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7635 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 402 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3473 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 166 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.54000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.719 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3747 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3532 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5057 ; 1.444 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8142 ; 0.950 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 477 ; 5.802 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;35.785 ;24.691 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 590 ;11.756 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.212 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 550 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4251 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 853 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1855 ; 1.663 ; 2.851 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1854 ; 1.661 ; 2.851 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2321 ; 2.400 ; 4.268 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2322 ; 2.401 ; 4.268 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1892 ; 2.422 ; 3.188 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1892 ; 2.406 ; 3.189 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2727 ; 3.835 ; 4.640 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4401 ; 5.939 ;23.894 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4295 ; 5.660 ;23.484 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XW0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1300004266. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109208 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 82.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES (PH 6.0) 30% (V/V) PEG 200, REMARK 280 5 % (W/V) PEG 3000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 86.74000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.07936 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 80.38000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 86.74000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 50.07936 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 80.38000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 86.74000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 50.07936 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 80.38000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 86.74000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 50.07936 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 80.38000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 86.74000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 50.07936 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 80.38000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 86.74000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 50.07936 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 80.38000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 100.15872 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 160.76000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 100.15872 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 160.76000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 100.15872 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 160.76000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 100.15872 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 160.76000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 100.15872 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 160.76000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 100.15872 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 160.76000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 59980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 77430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 241.14000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 241.14000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 241.14000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 827 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 895 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 900 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 64 O HOH A 601 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 148 -60.10 -126.84 REMARK 500 ALA A 152 -167.27 -169.53 REMARK 500 ASP A 154 -145.89 -100.08 REMARK 500 ILE A 192 -10.54 76.34 REMARK 500 SER A 229 28.96 -146.38 REMARK 500 ASP A 294 95.14 -64.84 REMARK 500 ALA A 427 55.17 -142.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8G0 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 519 DBREF 5XW0 A 1 460 UNP B6V7E4 B6V7E4_ASPNG 1 460 SEQRES 1 A 460 MET SER ASN LEU PRO HIS GLU PRO GLU PHE GLU GLN ALA SEQRES 2 A 460 TYR LYS GLU LEU ALA SER THR LEU GLU ASN SER THR LEU SEQRES 3 A 460 PHE GLN LYS ASN PRO GLU TYR ARG LYS ALA LEU ALA VAL SEQRES 4 A 460 VAL SER VAL PRO GLU ARG VAL ILE GLN PHE ARG VAL VAL SEQRES 5 A 460 TRP GLU ASP ASP ALA GLY ASN VAL GLN VAL ASN ARG GLY SEQRES 6 A 460 PHE ARG VAL GLN PHE ASN SER ALA LEU GLY PRO TYR LYS SEQRES 7 A 460 GLY GLY LEU ARG PHE HIS PRO SER VAL ASN LEU SER ILE SEQRES 8 A 460 LEU LYS PHE LEU GLY PHE GLU GLN ILE PHE LYS ASN ALA SEQRES 9 A 460 LEU THR GLY LEU ASN MET GLY GLY GLY LYS GLY GLY SER SEQRES 10 A 460 ASP PHE ASP PRO LYS GLY LYS SER ASP ASN GLU ILE ARG SEQRES 11 A 460 ARG PHE CYS VAL SER PHE MET THR GLU LEU CYS LYS HIS SEQRES 12 A 460 ILE GLY ALA ASP THR ASP VAL PRO ALA GLY ASP ILE GLY SEQRES 13 A 460 VAL THR GLY ARG GLU VAL GLY PHE LEU PHE GLY GLN TYR SEQRES 14 A 460 ARG LYS ILE ARG ASN GLN TRP GLU GLY VAL LEU THR GLY SEQRES 15 A 460 LYS GLY GLY SER TRP GLY GLY SER LEU ILE ARG PRO GLU SEQRES 16 A 460 ALA THR GLY TYR GLY VAL VAL TYR TYR VAL GLU HIS MET SEQRES 17 A 460 ILE ALA HIS ALA THR ASN GLY GLN GLU SER PHE LYS GLY SEQRES 18 A 460 LYS ARG VAL ALA ILE SER GLY SER GLY ASN VAL ALA GLN SEQRES 19 A 460 TYR ALA ALA LEU LYS VAL ILE GLU LEU GLY GLY SER VAL SEQRES 20 A 460 VAL SER LEU SER ASP SER GLN GLY SER LEU ILE ILE ASN SEQRES 21 A 460 GLY GLU GLY SER PHE THR PRO GLU GLU ILE GLU LEU ILE SEQRES 22 A 460 ALA GLN THR LYS VAL GLU ARG LYS GLN LEU ALA SER ILE SEQRES 23 A 460 VAL GLY ALA ALA PRO PHE SER ASP ALA ASN LYS PHE LYS SEQRES 24 A 460 TYR ILE ALA GLY ALA ARG PRO TRP VAL HIS VAL GLY LYS SEQRES 25 A 460 VAL ASP VAL ALA LEU PRO SER ALA THR GLN ASN GLU ILE SEQRES 26 A 460 SER GLY GLU GLU ALA GLN VAL LEU ILE ASN ALA GLY CYS SEQRES 27 A 460 LYS PHE ILE ALA GLU GLY SER ASN MET GLY CYS THR GLN SEQRES 28 A 460 GLU ALA ILE ASP THR PHE GLU ALA HIS ARG THR ALA ASN SEQRES 29 A 460 ALA GLY ALA ALA ALA ILE TRP TYR ALA PRO GLY LYS ALA SEQRES 30 A 460 ALA ASN ALA GLY GLY VAL ALA VAL SER GLY LEU GLU MET SEQRES 31 A 460 ALA GLN ASN SER ALA ARG LEU SER TRP THR SER GLU GLU SEQRES 32 A 460 VAL ASP ALA ARG LEU LYS ASP ILE MET ARG ASP CYS PHE SEQRES 33 A 460 LYS ASN GLY LEU GLU THR ALA GLN GLU TYR ALA THR PRO SEQRES 34 A 460 ALA GLU GLY VAL LEU PRO SER LEU VAL THR GLY SER ASN SEQRES 35 A 460 ILE ALA GLY PHE THR LYS VAL ALA ALA ALA MET LYS ASP SEQRES 36 A 460 GLN GLY ASP TRP TRP HET NDP A 501 48 HET 8G0 A 502 12 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HET GOL A 510 6 HET GOL A 511 6 HET GOL A 512 6 HET GOL A 513 6 HET GOL A 514 6 HET GOL A 515 6 HET PEG A 516 7 HET PEG A 517 7 HET PEG A 518 7 HET PEG A 519 7 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM 8G0 BENZENE-1,3-DICARBOXYLIC ACID HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NDP C21 H30 N7 O17 P3 FORMUL 3 8G0 C8 H6 O4 FORMUL 4 GOL 13(C3 H8 O3) FORMUL 17 PEG 4(C4 H10 O3) FORMUL 21 HOH *307(H2 O) HELIX 1 AA1 GLU A 7 ASN A 23 1 17 HELIX 2 AA2 THR A 25 ASN A 30 1 6 HELIX 3 AA3 GLU A 32 SER A 41 1 10 HELIX 4 AA4 ASN A 88 THR A 106 1 19 HELIX 5 AA5 SER A 125 CYS A 141 1 17 HELIX 6 AA6 THR A 158 ASN A 174 1 17 HELIX 7 AA7 GLU A 195 THR A 213 1 19 HELIX 8 AA8 GLY A 230 LEU A 243 1 14 HELIX 9 AA9 THR A 266 GLU A 279 1 14 HELIX 10 AB1 GLN A 282 ILE A 286 5 5 HELIX 11 AB2 SER A 326 ALA A 336 1 11 HELIX 12 AB3 THR A 350 ASN A 364 1 15 HELIX 13 AB4 ALA A 365 ALA A 369 5 5 HELIX 14 AB5 PRO A 374 ASN A 379 1 6 HELIX 15 AB6 ALA A 380 ARG A 396 1 17 HELIX 16 AB7 THR A 400 ALA A 427 1 28 HELIX 17 AB8 SER A 436 GLN A 456 1 21 SHEET 1 AA1 4 ARG A 45 GLU A 54 0 SHEET 2 AA1 4 VAL A 60 ASN A 71 -1 O GLN A 69 N ARG A 45 SHEET 3 AA1 4 GLY A 111 SER A 117 -1 O LYS A 114 N VAL A 68 SHEET 4 AA1 4 LEU A 81 PHE A 83 1 N ARG A 82 O GLY A 115 SHEET 1 AA2 5 ARG A 45 GLU A 54 0 SHEET 2 AA2 5 VAL A 60 ASN A 71 -1 O GLN A 69 N ARG A 45 SHEET 3 AA2 5 GLY A 111 SER A 117 -1 O LYS A 114 N VAL A 68 SHEET 4 AA2 5 TYR A 77 LYS A 78 1 N LYS A 78 O GLY A 113 SHEET 5 AA2 5 ASP A 149 VAL A 150 1 O VAL A 150 N TYR A 77 SHEET 1 AA3 7 PHE A 298 ALA A 302 0 SHEET 2 AA3 7 GLY A 255 ILE A 259 -1 N SER A 256 O ILE A 301 SHEET 3 AA3 7 SER A 246 SER A 251 -1 N LEU A 250 O LEU A 257 SHEET 4 AA3 7 ARG A 223 ILE A 226 1 N VAL A 224 O SER A 246 SHEET 5 AA3 7 VAL A 315 LEU A 317 1 O LEU A 317 N ALA A 225 SHEET 6 AA3 7 PHE A 340 ALA A 342 1 O PHE A 340 N ALA A 316 SHEET 7 AA3 7 TRP A 371 ALA A 373 1 O TRP A 371 N ILE A 341 CISPEP 1 ALA A 290 PRO A 291 0 -1.08 SITE 1 AC1 38 ARG A 82 HIS A 84 LYS A 122 GLY A 153 SITE 2 AC1 38 ASP A 154 ILE A 155 GLY A 156 ARG A 193 SITE 3 AC1 38 THR A 197 SER A 229 GLY A 230 ASN A 231 SITE 4 AC1 38 VAL A 232 SER A 251 ASP A 252 SER A 253 SITE 5 AC1 38 GLN A 282 SER A 319 ALA A 320 THR A 321 SITE 6 AC1 38 GLY A 344 SER A 345 ASN A 346 ASN A 379 SITE 7 AC1 38 8G0 A 502 GOL A 507 GOL A 508 HOH A 636 SITE 8 AC1 38 HOH A 652 HOH A 660 HOH A 667 HOH A 680 SITE 9 AC1 38 HOH A 702 HOH A 706 HOH A 725 HOH A 728 SITE 10 AC1 38 HOH A 736 HOH A 815 SITE 1 AC2 15 LYS A 78 GLY A 79 GLN A 99 LYS A 102 SITE 2 AC2 15 LYS A 114 ALA A 152 GLY A 153 ASP A 154 SITE 3 AC2 15 THR A 181 ARG A 193 ASN A 346 VAL A 383 SITE 4 AC2 15 SER A 386 NDP A 501 HOH A 638 SITE 1 AC3 8 PRO A 43 GLN A 48 PHE A 49 ARG A 50 SITE 2 AC3 8 ARG A 64 LYS A 93 HOH A 601 HOH A 679 SITE 1 AC4 5 LYS A 183 GLY A 185 SER A 190 PRO A 194 SITE 2 AC4 5 HOH A 604 SITE 1 AC5 9 SER A 72 PRO A 76 TYR A 77 THR A 148 SITE 2 AC5 9 ARG A 170 ASN A 174 GLN A 175 TRP A 176 SITE 3 AC5 9 HOH A 631 SITE 1 AC6 7 LEU A 105 ASP A 414 CYS A 415 ASN A 418 SITE 2 AC6 7 LYS A 448 PEG A 518 HOH A 759 SITE 1 AC7 7 ALA A 152 GLY A 153 GLY A 182 ARG A 193 SITE 2 AC7 7 NDP A 501 HOH A 617 HOH A 652 SITE 1 AC8 7 ARG A 305 GLN A 322 ASN A 323 NDP A 501 SITE 2 AC8 7 GOL A 513 HOH A 608 HOH A 618 SITE 1 AC9 3 TRP A 399 GLU A 403 ARG A 407 SITE 1 AD1 5 TYR A 14 SER A 41 HOH A 614 HOH A 640 SITE 2 AD1 5 HOH A 673 SITE 1 AD2 5 TYR A 33 LYS A 448 PEG A 518 HOH A 612 SITE 2 AD2 5 HOH A 658 SITE 1 AD3 7 LYS A 142 HIS A 143 ILE A 144 ARG A 173 SITE 2 AD3 7 ASN A 174 GLN A 175 HOH A 783 SITE 1 AD4 5 ASP A 252 GLY A 303 ALA A 304 GOL A 508 SITE 2 AD4 5 HOH A 637 SITE 1 AD5 3 GLY A 123 LYS A 124 ARG A 280 SITE 1 AD6 2 LYS A 142 HOH A 620 SITE 1 AD7 7 ASN A 109 GLY A 188 GLY A 189 GLN A 392 SITE 2 AD7 7 ASN A 393 ARG A 396 HOH A 773 SITE 1 AD8 4 SER A 264 ASN A 296 LYS A 297 HOH A 606 SITE 1 AD9 8 GLY A 107 ASN A 109 SER A 186 LYS A 448 SITE 2 AD9 8 GOL A 506 GOL A 511 HOH A 661 HOH A 762 SITE 1 AE1 5 TYR A 203 GLU A 206 HIS A 207 LYS A 409 SITE 2 AE1 5 HOH A 814 CRYST1 173.480 173.480 241.140 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005764 0.003328 0.000000 0.00000 SCALE2 0.000000 0.006656 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004147 0.00000