HEADER HYDROLASE 29-JUN-17 5XWI TITLE CRYSTAL STRUCTURE OF SPAP, AN ALKALINE PHOSPHATASE FROM SPHINGOMONAS TITLE 2 SHOWING COVALENT INTERMEDIATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKALINE PHOSPHATASE PHOK; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SPAP PROTEIN; COMPND 5 EC: 3.1.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 28214; SOURCE 4 GENE: PHOK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ALKALINE PHOSPHATASE, REACTION INTERMEDIATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.C.BIHANI REVDAT 3 13-NOV-24 5XWI 1 REMARK REVDAT 2 22-NOV-23 5XWI 1 LINK REVDAT 1 04-JUL-18 5XWI 0 JRNL AUTH S.C.BIHANI JRNL TITL CRYSTAL STRUCTURE OF SPAP, AN ALKALINE PHOSPHATASE FROM JRNL TITL 2 SPHINGOMONAS SHOWING COVALENT INTERMEDIATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 54407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3946 - 4.9925 0.95 2842 149 0.1833 0.2259 REMARK 3 2 4.9925 - 3.9637 1.00 2815 148 0.1428 0.1631 REMARK 3 3 3.9637 - 3.4629 1.00 2790 147 0.1543 0.1818 REMARK 3 4 3.4629 - 3.1464 1.00 2752 145 0.1615 0.2185 REMARK 3 5 3.1464 - 2.9209 1.00 2741 144 0.1807 0.2005 REMARK 3 6 2.9209 - 2.7487 1.00 2733 144 0.1710 0.2215 REMARK 3 7 2.7487 - 2.6111 1.00 2724 144 0.1639 0.2239 REMARK 3 8 2.6111 - 2.4975 1.00 2728 143 0.1724 0.2187 REMARK 3 9 2.4975 - 2.4013 1.00 2711 143 0.1639 0.1879 REMARK 3 10 2.4013 - 2.3185 1.00 2707 142 0.1599 0.2476 REMARK 3 11 2.3185 - 2.2460 1.00 2672 141 0.1661 0.1779 REMARK 3 12 2.2460 - 2.1818 1.00 2712 143 0.1658 0.2207 REMARK 3 13 2.1818 - 2.1243 1.00 2716 143 0.1766 0.2066 REMARK 3 14 2.1243 - 2.0725 1.00 2696 142 0.1894 0.2398 REMARK 3 15 2.0725 - 2.0254 0.99 2651 139 0.2171 0.2594 REMARK 3 16 2.0254 - 1.9823 1.00 2704 142 0.2144 0.2421 REMARK 3 17 1.9823 - 1.9426 1.00 2676 141 0.2149 0.2694 REMARK 3 18 1.9426 - 1.9060 1.00 2657 140 0.2395 0.2671 REMARK 3 19 1.9060 - 1.8719 0.98 2660 140 0.2543 0.2939 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3880 REMARK 3 ANGLE : 1.095 5285 REMARK 3 CHIRALITY : 0.040 587 REMARK 3 PLANARITY : 0.005 698 REMARK 3 DIHEDRAL : 12.777 1393 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4983 17.2915 -5.2875 REMARK 3 T TENSOR REMARK 3 T11: 0.1901 T22: 0.2328 REMARK 3 T33: 0.2034 T12: -0.0639 REMARK 3 T13: -0.0543 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 1.7453 L22: 1.3697 REMARK 3 L33: 1.9741 L12: -1.1361 REMARK 3 L13: 0.3195 L23: -0.9674 REMARK 3 S TENSOR REMARK 3 S11: -0.1211 S12: 0.0547 S13: 0.0809 REMARK 3 S21: 0.1336 S22: 0.0535 S23: -0.0275 REMARK 3 S31: -0.1614 S32: -0.0764 S33: 0.0494 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1721 9.5052 -27.9431 REMARK 3 T TENSOR REMARK 3 T11: 0.3168 T22: 0.4828 REMARK 3 T33: 0.4364 T12: -0.0440 REMARK 3 T13: -0.2116 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.3662 L22: 2.5085 REMARK 3 L33: 2.6912 L12: 1.4146 REMARK 3 L13: -0.2379 L23: 1.4090 REMARK 3 S TENSOR REMARK 3 S11: 0.2714 S12: 0.2059 S13: -0.3629 REMARK 3 S21: -0.4762 S22: -0.1677 S23: 0.4042 REMARK 3 S31: 0.1006 S32: -0.3792 S33: -0.0751 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3767 24.3667 -15.4255 REMARK 3 T TENSOR REMARK 3 T11: 0.1716 T22: 0.3913 REMARK 3 T33: 0.2536 T12: -0.0073 REMARK 3 T13: -0.0524 T23: 0.0931 REMARK 3 L TENSOR REMARK 3 L11: 1.9173 L22: 2.0904 REMARK 3 L33: 1.8308 L12: -0.5375 REMARK 3 L13: -0.1221 L23: 0.0096 REMARK 3 S TENSOR REMARK 3 S11: -0.0678 S12: 0.1348 S13: 0.0339 REMARK 3 S21: 0.0218 S22: 0.0997 S23: 0.2096 REMARK 3 S31: -0.1950 S32: -0.4335 S33: 0.0131 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0494 29.5622 -27.9864 REMARK 3 T TENSOR REMARK 3 T11: 0.2443 T22: 0.5444 REMARK 3 T33: 0.3223 T12: -0.0658 REMARK 3 T13: -0.0797 T23: 0.2096 REMARK 3 L TENSOR REMARK 3 L11: 6.1385 L22: 1.6895 REMARK 3 L33: 0.6031 L12: -1.0328 REMARK 3 L13: -1.9132 L23: 0.2548 REMARK 3 S TENSOR REMARK 3 S11: -0.0377 S12: 0.7384 S13: 0.5786 REMARK 3 S21: -0.0642 S22: -0.1664 S23: -0.2931 REMARK 3 S31: -0.3160 S32: 0.2468 S33: 0.1875 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8547 11.7240 -21.6406 REMARK 3 T TENSOR REMARK 3 T11: 0.2592 T22: 0.7274 REMARK 3 T33: 0.3294 T12: 0.0836 REMARK 3 T13: 0.0370 T23: 0.1942 REMARK 3 L TENSOR REMARK 3 L11: 0.7077 L22: 1.2215 REMARK 3 L33: 2.8257 L12: -0.1051 REMARK 3 L13: 0.4967 L23: -1.7989 REMARK 3 S TENSOR REMARK 3 S11: 0.1426 S12: 0.6239 S13: 0.2071 REMARK 3 S21: -0.3498 S22: -0.3793 S23: -0.1758 REMARK 3 S31: 0.1998 S32: 0.8033 S33: 0.2946 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6213 23.1702 -23.8561 REMARK 3 T TENSOR REMARK 3 T11: 0.2132 T22: 0.5491 REMARK 3 T33: 0.3118 T12: -0.0519 REMARK 3 T13: -0.0477 T23: 0.1885 REMARK 3 L TENSOR REMARK 3 L11: 2.5253 L22: 0.9281 REMARK 3 L33: 2.4762 L12: -1.5142 REMARK 3 L13: -1.2480 L23: 0.6176 REMARK 3 S TENSOR REMARK 3 S11: 0.1145 S12: 0.7357 S13: 0.3714 REMARK 3 S21: -0.1531 S22: -0.3706 S23: -0.2806 REMARK 3 S31: -0.2134 S32: 0.2589 S33: 0.1966 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 281 THROUGH 357 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5833 20.2234 -12.8793 REMARK 3 T TENSOR REMARK 3 T11: 0.1805 T22: 0.2800 REMARK 3 T33: 0.2373 T12: -0.0873 REMARK 3 T13: -0.0637 T23: 0.0967 REMARK 3 L TENSOR REMARK 3 L11: 1.4311 L22: 0.9880 REMARK 3 L33: 1.7577 L12: -0.9832 REMARK 3 L13: 0.7977 L23: -0.8209 REMARK 3 S TENSOR REMARK 3 S11: -0.0461 S12: 0.3495 S13: 0.2885 REMARK 3 S21: 0.0808 S22: -0.1753 S23: -0.1845 REMARK 3 S31: -0.1943 S32: 0.1897 S33: 0.1635 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 358 THROUGH 424 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9886 -8.6260 -21.9912 REMARK 3 T TENSOR REMARK 3 T11: 0.6592 T22: 0.4151 REMARK 3 T33: 0.5726 T12: -0.1131 REMARK 3 T13: -0.3610 T23: -0.1144 REMARK 3 L TENSOR REMARK 3 L11: 0.7005 L22: 0.0721 REMARK 3 L33: 0.5574 L12: 0.1269 REMARK 3 L13: 0.3231 L23: -0.0835 REMARK 3 S TENSOR REMARK 3 S11: 0.1964 S12: 0.3524 S13: -0.4672 REMARK 3 S21: -0.4690 S22: -0.0088 S23: 0.4115 REMARK 3 S31: 0.6543 S32: -0.0440 S33: -0.2249 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 425 THROUGH 487 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9937 -2.7707 -12.1324 REMARK 3 T TENSOR REMARK 3 T11: 0.3449 T22: 0.3909 REMARK 3 T33: 0.4858 T12: -0.2043 REMARK 3 T13: -0.1774 T23: 0.0681 REMARK 3 L TENSOR REMARK 3 L11: 1.4462 L22: 0.5152 REMARK 3 L33: 0.7912 L12: -0.4417 REMARK 3 L13: 1.0697 L23: -0.3919 REMARK 3 S TENSOR REMARK 3 S11: 0.3040 S12: 0.1072 S13: -0.3995 REMARK 3 S21: -0.2258 S22: 0.0790 S23: 0.4267 REMARK 3 S31: 0.5545 S32: -0.3347 S33: -0.0816 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 488 THROUGH 556 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8625 16.9984 0.2186 REMARK 3 T TENSOR REMARK 3 T11: 0.2154 T22: 0.2504 REMARK 3 T33: 0.2010 T12: -0.0146 REMARK 3 T13: -0.0142 T23: 0.0754 REMARK 3 L TENSOR REMARK 3 L11: 1.7371 L22: 2.4485 REMARK 3 L33: 2.7045 L12: -1.2038 REMARK 3 L13: 0.5766 L23: -0.0987 REMARK 3 S TENSOR REMARK 3 S11: -0.2181 S12: -0.1112 S13: -0.0284 REMARK 3 S21: 0.3626 S22: 0.2162 S23: 0.2035 REMARK 3 S31: -0.2332 S32: -0.3944 S33: 0.0295 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004283. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979576 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54473 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 42.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.04 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3Q3Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE 100MM MES REMARK 280 BUFFER, PH 6.5, 1MM PNPP, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.01500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.80000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.00750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.80000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 126.02250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.80000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.80000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.00750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.80000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.80000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 126.02250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 84.01500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 951 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 LYS A 3 REMARK 465 HIS A 4 REMARK 465 VAL A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 ALA A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 MET A 15 REMARK 465 PRO A 16 REMARK 465 VAL A 17 REMARK 465 VAL A 18 REMARK 465 ALA A 19 REMARK 465 GLN A 20 REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 ALA A 23 REMARK 465 PRO A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 465 ALA A 27 REMARK 465 PRO A 28 REMARK 465 ALA A 29 REMARK 465 ALA A 380 REMARK 465 GLU A 381 REMARK 465 LYS A 382 REMARK 465 ALA A 383 REMARK 465 GLY A 384 REMARK 465 LEU A 385 REMARK 465 PRO A 386 REMARK 465 GLY A 387 REMARK 465 LYS A 388 REMARK 465 LYS A 389 REMARK 465 LYS A 404 REMARK 465 GLY A 405 REMARK 465 LEU A 406 REMARK 465 THR A 407 REMARK 465 ALA A 408 REMARK 465 ALA A 409 REMARK 465 GLN A 410 REMARK 465 ARG A 411 REMARK 465 ALA A 412 REMARK 465 ARG A 413 REMARK 465 VAL A 414 REMARK 465 GLU A 415 REMARK 465 THR A 416 REMARK 465 GLU A 417 REMARK 465 ALA A 557 REMARK 465 GLY A 558 REMARK 465 GLN A 559 REMARK 465 LEU A 560 REMARK 465 GLU A 561 REMARK 465 HIS A 562 REMARK 465 HIS A 563 REMARK 465 HIS A 564 REMARK 465 HIS A 565 REMARK 465 HIS A 566 REMARK 465 HIS A 567 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LEU A 206 CG CD1 CD2 REMARK 470 GLN A 209 CG CD OE1 NE2 REMARK 470 GLN A 239 CG CD OE1 NE2 REMARK 470 ASN A 242 CG OD1 ND2 REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 LYS A 373 CG CD CE NZ REMARK 470 GLU A 481 CG CD OE1 OE2 REMARK 470 GLN A 482 CG CD OE1 NE2 REMARK 470 VAL A 484 CG1 CG2 REMARK 470 LYS A 538 CG CD CE NZ REMARK 470 LYS A 552 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 79 64.40 -118.79 REMARK 500 HIS A 346 171.88 177.20 REMARK 500 SER A 478 34.13 -84.08 REMARK 500 HIS A 491 -140.54 -110.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 49 OD1 REMARK 620 2 TPO A 89 OG1 131.1 REMARK 620 3 TPO A 89 O3P 98.9 65.1 REMARK 620 4 ASP A 345 OD2 95.6 93.9 159.0 REMARK 620 5 HIS A 346 NE2 110.3 115.8 91.8 97.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TPO A 89 O3P REMARK 620 2 ASP A 300 OD1 88.8 REMARK 620 3 ASP A 300 OD2 78.1 55.7 REMARK 620 4 HIS A 304 NE2 160.9 100.4 93.2 REMARK 620 5 HIS A 491 NE2 97.9 98.8 153.9 97.2 REMARK 620 6 HOH A 702 O 67.9 151.8 102.1 97.9 100.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 357 O REMARK 620 2 ASP A 547 OD2 35.3 REMARK 620 3 VAL A 549 O 38.9 4.4 REMARK 620 4 GLY A 551 O 40.8 5.6 4.1 REMARK 620 5 ASP A 553 O 38.2 3.3 1.2 3.7 REMARK 620 6 HOH A 863 O 37.6 3.1 4.8 3.4 3.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 DBREF 5XWI A 1 559 UNP A1YYW7 ALPH_SPHSX 1 559 SEQADV 5XWI LEU A 560 UNP A1YYW7 EXPRESSION TAG SEQADV 5XWI GLU A 561 UNP A1YYW7 EXPRESSION TAG SEQADV 5XWI HIS A 562 UNP A1YYW7 EXPRESSION TAG SEQADV 5XWI HIS A 563 UNP A1YYW7 EXPRESSION TAG SEQADV 5XWI HIS A 564 UNP A1YYW7 EXPRESSION TAG SEQADV 5XWI HIS A 565 UNP A1YYW7 EXPRESSION TAG SEQADV 5XWI HIS A 566 UNP A1YYW7 EXPRESSION TAG SEQADV 5XWI HIS A 567 UNP A1YYW7 EXPRESSION TAG SEQRES 1 A 567 MET LEU LYS HIS VAL ALA ALA ALA LEU LEU LEU ALA THR SEQRES 2 A 567 ALA MET PRO VAL VAL ALA GLN SER PRO ALA PRO ALA ALA SEQRES 3 A 567 ALA PRO ALA PRO ALA ALA ARG SER ILE ALA ALA THR PRO SEQRES 4 A 567 PRO LYS LEU ILE VAL ALA ILE SER VAL ASP GLN PHE SER SEQRES 5 A 567 ALA ASP LEU PHE SER GLU TYR ARG GLN TYR TYR THR GLY SEQRES 6 A 567 GLY LEU LYS ARG LEU THR SER GLU GLY ALA VAL PHE PRO SEQRES 7 A 567 ARG GLY TYR GLN SER HIS ALA ALA THR GLU TPO CYS PRO SEQRES 8 A 567 GLY HIS SER THR ILE LEU THR GLY SER ARG PRO SER ARG SEQRES 9 A 567 THR GLY ILE ILE ALA ASN ASN TRP PHE ASP LEU ASP ALA SEQRES 10 A 567 LYS ARG GLU ASP LYS ASN LEU TYR CYS ALA GLU ASP GLU SEQRES 11 A 567 SER GLN PRO GLY SER SER SER ASP LYS TYR GLU ALA SER SEQRES 12 A 567 PRO LEU HIS LEU LYS VAL PRO THR LEU GLY GLY ARG MET SEQRES 13 A 567 LYS ALA ALA ASN PRO ALA THR ARG VAL VAL SER VAL ALA SEQRES 14 A 567 GLY LYS ASP ARG ALA ALA ILE MET MET GLY GLY ALA THR SEQRES 15 A 567 ALA ASP GLN VAL TRP TRP LEU GLY GLY PRO GLN GLY TYR SEQRES 16 A 567 VAL SER TYR LYS GLY VAL ALA PRO THR PRO LEU VAL THR SEQRES 17 A 567 GLN VAL ASN GLN ALA PHE ALA GLN ARG LEU ALA GLN PRO SEQRES 18 A 567 ASN PRO GLY PHE GLU LEU PRO ALA GLN CYS VAL SER LYS SEQRES 19 A 567 ASP PHE PRO VAL GLN ALA GLY ASN ARG THR VAL GLY THR SEQRES 20 A 567 GLY ARG PHE ALA ARG ASP ALA GLY ASP TYR LYS GLY PHE SEQRES 21 A 567 ARG ILE SER PRO GLU GLN ASP ALA MET THR LEU ALA PHE SEQRES 22 A 567 ALA ALA ALA ALA ILE GLU ASN MET GLN LEU GLY LYS GLN SEQRES 23 A 567 ALA GLN THR ASP ILE ILE SER ILE GLY LEU SER ALA THR SEQRES 24 A 567 ASP TYR VAL GLY HIS THR PHE GLY THR GLU GLY THR GLU SEQRES 25 A 567 SER CYS ILE GLN VAL ASP ARG LEU ASP THR GLU LEU GLY SEQRES 26 A 567 ALA PHE PHE ASP LYS LEU ASP LYS ASP GLY ILE ASP TYR SEQRES 27 A 567 VAL VAL VAL LEU THR ALA ASP HIS GLY GLY HIS ASP LEU SEQRES 28 A 567 PRO GLU ARG HIS ARG MET ASN ALA MET PRO MET GLU GLN SEQRES 29 A 567 ARG VAL ASP MET ALA LEU THR PRO LYS ALA LEU ASN ALA SEQRES 30 A 567 THR ILE ALA GLU LYS ALA GLY LEU PRO GLY LYS LYS VAL SEQRES 31 A 567 ILE TRP SER ASP GLY PRO SER GLY ASP ILE TYR TYR ASP SEQRES 32 A 567 LYS GLY LEU THR ALA ALA GLN ARG ALA ARG VAL GLU THR SEQRES 33 A 567 GLU ALA LEU LYS TYR LEU ARG ALA HIS PRO GLN VAL GLN SEQRES 34 A 567 THR VAL PHE THR LYS ALA GLU ILE ALA ALA THR PRO SER SEQRES 35 A 567 PRO SER GLY PRO PRO GLU SER TRP SER LEU ILE GLN GLU SEQRES 36 A 567 ALA ARG ALA SER PHE TYR PRO SER ARG SER GLY ASP LEU SEQRES 37 A 567 LEU LEU LEU LEU LYS PRO ARG VAL MET SER ILE PRO GLU SEQRES 38 A 567 GLN ALA VAL MET GLY SER VAL ALA THR HIS GLY SER PRO SEQRES 39 A 567 TRP ASP THR ASP ARG ARG VAL PRO ILE LEU PHE TRP ARG SEQRES 40 A 567 LYS GLY MET GLN HIS PHE GLU GLN PRO LEU GLY VAL GLU SEQRES 41 A 567 THR VAL ASP ILE LEU PRO SER LEU ALA ALA LEU ILE LYS SEQRES 42 A 567 LEU PRO VAL PRO LYS ASP GLN ILE ASP GLY ARG CYS LEU SEQRES 43 A 567 ASP LEU VAL ALA GLY LYS ASP ASP SER CYS ALA GLY GLN SEQRES 44 A 567 LEU GLU HIS HIS HIS HIS HIS HIS MODRES 5XWI TPO A 89 THR MODIFIED RESIDUE HET TPO A 89 11 HET ZN A 601 1 HET ZN A 602 1 HET CA A 603 1 HET GOL A 604 6 HET SO4 A 605 5 HETNAM TPO PHOSPHOTHREONINE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN TPO PHOSPHONOTHREONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CA CA 2+ FORMUL 5 GOL C3 H8 O3 FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *286(H2 O) HELIX 1 AA1 SER A 52 ARG A 60 1 9 HELIX 2 AA2 GLN A 61 TYR A 63 5 3 HELIX 3 AA3 GLY A 65 GLY A 74 1 10 HELIX 4 AA4 GLU A 88 LEU A 97 1 10 HELIX 5 AA5 ARG A 101 GLY A 106 1 6 HELIX 6 AA6 THR A 151 ASN A 160 1 10 HELIX 7 AA7 LYS A 171 GLY A 180 1 10 HELIX 8 AA8 THR A 204 ALA A 219 1 16 HELIX 9 AA9 PRO A 228 ASP A 235 5 8 HELIX 10 AB1 ASP A 256 ILE A 262 1 7 HELIX 11 AB2 SER A 263 MET A 281 1 19 HELIX 12 AB3 SER A 297 GLY A 307 1 11 HELIX 13 AB4 GLY A 310 ASP A 334 1 25 HELIX 14 AB5 LEU A 351 ARG A 356 1 6 HELIX 15 AB6 ASP A 367 LEU A 370 5 4 HELIX 16 AB7 THR A 371 ILE A 379 1 9 HELIX 17 AB8 LEU A 419 HIS A 425 1 7 HELIX 18 AB9 LYS A 434 ALA A 439 1 6 HELIX 19 AC1 PRO A 446 TRP A 450 5 5 HELIX 20 AC2 SER A 451 SER A 459 1 9 HELIX 21 AC3 TRP A 495 ARG A 499 1 5 HELIX 22 AC4 ASP A 523 ILE A 532 1 10 HELIX 23 AC5 PRO A 537 ILE A 541 5 5 SHEET 1 AA1 9 TYR A 195 VAL A 196 0 SHEET 2 AA1 9 GLN A 185 LEU A 189 -1 N TRP A 188 O VAL A 196 SHEET 3 AA1 9 VAL A 165 ALA A 169 1 N SER A 167 O TRP A 187 SHEET 4 AA1 9 ASP A 290 LEU A 296 1 O GLY A 295 N VAL A 168 SHEET 5 AA1 9 LEU A 42 VAL A 48 1 N ALA A 45 O ILE A 294 SHEET 6 AA1 9 TYR A 338 THR A 343 1 O THR A 343 N VAL A 48 SHEET 7 AA1 9 ARG A 500 TRP A 506 -1 O TRP A 506 N VAL A 340 SHEET 8 AA1 9 ALA A 75 TYR A 81 -1 N ALA A 75 O PHE A 505 SHEET 9 AA1 9 PHE A 513 GLU A 514 1 O PHE A 513 N VAL A 76 SHEET 1 AA2 9 TYR A 195 VAL A 196 0 SHEET 2 AA2 9 GLN A 185 LEU A 189 -1 N TRP A 188 O VAL A 196 SHEET 3 AA2 9 VAL A 165 ALA A 169 1 N SER A 167 O TRP A 187 SHEET 4 AA2 9 ASP A 290 LEU A 296 1 O GLY A 295 N VAL A 168 SHEET 5 AA2 9 LEU A 42 VAL A 48 1 N ALA A 45 O ILE A 294 SHEET 6 AA2 9 TYR A 338 THR A 343 1 O THR A 343 N VAL A 48 SHEET 7 AA2 9 ARG A 500 TRP A 506 -1 O TRP A 506 N VAL A 340 SHEET 8 AA2 9 ALA A 75 TYR A 81 -1 N ALA A 75 O PHE A 505 SHEET 9 AA2 9 VAL A 519 GLU A 520 1 O VAL A 519 N ARG A 79 SHEET 1 AA3 2 ASN A 111 PHE A 113 0 SHEET 2 AA3 2 ASN A 123 TYR A 125 -1 O LEU A 124 N TRP A 112 SHEET 1 AA4 2 VAL A 238 ALA A 240 0 SHEET 2 AA4 2 ARG A 243 VAL A 245 -1 O VAL A 245 N VAL A 238 SHEET 1 AA5 2 GLN A 364 ARG A 365 0 SHEET 2 AA5 2 VAL A 476 MET A 477 1 O MET A 477 N GLN A 364 SHEET 1 AA6 4 ILE A 391 SER A 393 0 SHEET 2 AA6 4 GLY A 398 TYR A 402 -1 O TYR A 401 N TRP A 392 SHEET 3 AA6 4 LEU A 468 LEU A 472 -1 O LEU A 470 N GLY A 398 SHEET 4 AA6 4 VAL A 428 THR A 433 -1 N THR A 430 O LEU A 471 SSBOND 1 CYS A 90 CYS A 126 1555 1555 2.08 SSBOND 2 CYS A 231 CYS A 314 1555 1555 2.05 SSBOND 3 CYS A 545 CYS A 556 1555 1555 2.05 LINK C GLU A 88 N TPO A 89 1555 1555 1.33 LINK C TPO A 89 N CYS A 90 1555 1555 1.32 LINK OD1 ASP A 49 ZN ZN A 601 1555 1555 2.02 LINK OG1 TPO A 89 ZN ZN A 601 1555 1555 2.08 LINK O3P TPO A 89 ZN ZN A 601 1555 1555 2.50 LINK O3P TPO A 89 ZN ZN A 602 1555 1555 1.87 LINK OD1 ASP A 300 ZN ZN A 602 1555 1555 2.16 LINK OD2 ASP A 300 ZN ZN A 602 1555 1555 2.50 LINK NE2 HIS A 304 ZN ZN A 602 1555 1555 1.97 LINK OD2 ASP A 345 ZN ZN A 601 1555 1555 1.96 LINK NE2 HIS A 346 ZN ZN A 601 1555 1555 2.03 LINK O MET A 357 CA CA A 603 1555 7555 2.36 LINK NE2 HIS A 491 ZN ZN A 602 1555 1555 2.10 LINK OD2 ASP A 547 CA CA A 603 1555 1555 2.32 LINK O VAL A 549 CA CA A 603 1555 1555 2.30 LINK O GLY A 551 CA CA A 603 1555 1555 2.34 LINK O ASP A 553 CA CA A 603 1555 1555 2.31 LINK ZN ZN A 602 O HOH A 702 1555 1555 2.49 LINK CA CA A 603 O HOH A 863 1555 1555 2.37 SITE 1 AC1 5 ASP A 49 TPO A 89 ASP A 300 ASP A 345 SITE 2 AC1 5 HIS A 346 SITE 1 AC2 5 TPO A 89 ASP A 300 HIS A 304 HIS A 491 SITE 2 AC2 5 HOH A 702 SITE 1 AC3 6 MET A 357 ASP A 547 VAL A 549 GLY A 551 SITE 2 AC3 6 ASP A 553 HOH A 863 SITE 1 AC4 5 SER A 103 ARG A 104 ARG A 457 ASP A 542 SITE 2 AC4 5 HOH A 815 SITE 1 AC5 4 GLN A 429 GLN A 454 HOH A 716 HOH A 822 CRYST1 87.600 87.600 168.030 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005951 0.00000