HEADER HYDROLASE 01-JUL-17 5XX3 TITLE A BPTI-[5,55] VARIANT WITH C14GA38G MUTATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANCREATIC TRYPSIN INHIBITOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APROTININ,BASIC PROTEASE INHIBITOR,BPTI; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.M.ISLAM REVDAT 3 22-NOV-23 5XX3 1 REMARK REVDAT 2 17-JUL-19 5XX3 1 JRNL REVDAT 1 04-JUL-18 5XX3 0 JRNL AUTH M.M.ISLAM,K.KOBAYASHI,S.I.KIDOKORO,Y.KURODA JRNL TITL HYDROPHOBIC SURFACE RESIDUES CAN STABILIZE A PROTEIN THROUGH JRNL TITL 2 IMPROVED WATER-PROTEIN INTERACTIONS. JRNL REF FEBS J. 2019 JRNL REFN ISSN 1742-464X JRNL PMID 31175706 JRNL DOI 10.1111/FEBS.14941 REMARK 2 REMARK 2 RESOLUTION. 1.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 40751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2170 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2828 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.1770 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.1850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 891 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 284 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.036 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.038 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.050 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 945 ; 0.024 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 875 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1276 ; 2.278 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2003 ; 1.047 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 118 ; 7.254 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 45 ;22.654 ;21.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 143 ;11.543 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;10.194 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 124 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1086 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 246 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 466 ; 1.397 ; 0.703 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 465 ; 1.154 ; 0.694 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 580 ; 1.267 ; 1.053 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 581 ; 1.299 ; 1.062 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 479 ; 2.054 ; 0.934 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 472 ; 2.013 ; 0.928 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 683 ; 2.020 ; 1.291 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1380 ; 4.251 ; 9.186 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1167 ; 2.540 ; 7.167 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1820 ; 7.224 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 35 ;20.905 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2051 ;11.690 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XX3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004305. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 101 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : AGILENT ATLAS CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44641 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 53.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : 0.32800 REMARK 200 FOR SHELL : 5.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2ZVX REMARK 200 REMARK 200 REMARK: TWO CHAINS IN THE ASYMMETRIC UNIT REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000; 0.2M LITHIUM SULFATE; REMARK 280 0.1M TRIS-HCL, PH8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.54850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 15 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 286 O HOH B 296 1.51 REMARK 500 O HOH A 4124 O HOH A 4150 1.58 REMARK 500 O HOH A 4134 O HOH A 4214 1.63 REMARK 500 O HOH B 215 O HOH B 254 1.68 REMARK 500 O4 SO4 A 4003 O HOH A 4101 1.72 REMARK 500 O HOH A 4109 O HOH A 4125 1.75 REMARK 500 O HOH B 218 O HOH B 258 1.75 REMARK 500 O HOH A 4165 O HOH A 4237 1.90 REMARK 500 O HOH B 202 O HOH B 283 1.90 REMARK 500 O HOH A 4197 O HOH A 4231 1.93 REMARK 500 O ASP B 3 O HOH B 201 1.95 REMARK 500 O LYS B 15 O HOH B 202 1.98 REMARK 500 C ASP B 3 O HOH B 201 1.99 REMARK 500 O HOH A 4176 O HOH A 4218 1.99 REMARK 500 O HOH B 217 O HOH B 295 2.06 REMARK 500 CG ASP B 3 O HOH B 201 2.07 REMARK 500 O HOH A 4125 O HOH A 4176 2.10 REMARK 500 O ASP B 3 O HOH B 203 2.13 REMARK 500 O HOH A 4216 O HOH A 4245 2.15 REMARK 500 O HOH B 277 O HOH B 288 2.16 REMARK 500 O HOH B 213 O HOH B 242 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 4142 O HOH B 210 2556 1.01 REMARK 500 O HOH A 4205 O HOH A 4248 1655 1.07 REMARK 500 O HOH A 4201 O HOH A 4214 1655 1.19 REMARK 500 O HOH B 221 O HOH B 285 2556 1.25 REMARK 500 NH2 ARG A 39 O HOH B 263 2556 1.42 REMARK 500 NE ARG A 39 O HOH B 329 2556 1.48 REMARK 500 O HOH A 4194 O HOH A 4204 2545 1.63 REMARK 500 O HOH A 4187 O HOH B 261 1565 1.77 REMARK 500 NH1 ARG A 39 O HOH B 263 2556 1.77 REMARK 500 CZ ARG A 39 O HOH B 263 2556 1.82 REMARK 500 OE1 GLN A 31 O HOH A 4212 2555 1.83 REMARK 500 O HOH A 4235 O HOH A 4248 1655 1.87 REMARK 500 O LYS A 15 O HOH B 202 1565 1.88 REMARK 500 O HOH A 4187 O HOH B 202 1565 1.88 REMARK 500 CZ ARG A 39 O HOH B 329 2556 1.90 REMARK 500 O HOH B 281 O HOH B 312 2646 1.94 REMARK 500 O HOH A 4211 O HOH B 233 1565 2.07 REMARK 500 NH2 ARG A 39 O HOH B 329 2556 2.09 REMARK 500 NE2 GLN B 31 O HOH B 214 2546 2.11 REMARK 500 O HOH A 4244 O HOH A 4246 1455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 7 CD GLU A 7 OE1 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 1 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 39 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 39 NE - CZ - NH2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 53 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 1 NH1 - CZ - NH2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG B 1 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 17 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 42 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 53 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 44 107.91 -160.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A4253 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A4254 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A4255 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A4256 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH B 331 DISTANCE = 6.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 4003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 101 DBREF 5XX3 A 1 58 UNP P00974 BPT1_BOVIN 36 93 DBREF 5XX3 B 1 58 UNP P00974 BPT1_BOVIN 36 93 SEQADV 5XX3 GLY A 14 UNP P00974 CYS 49 ENGINEERED MUTATION SEQADV 5XX3 ALA A 30 UNP P00974 CYS 65 ENGINEERED MUTATION SEQADV 5XX3 GLY A 38 UNP P00974 CYS 73 ENGINEERED MUTATION SEQADV 5XX3 ALA A 51 UNP P00974 CYS 86 ENGINEERED MUTATION SEQADV 5XX3 LEU A 52 UNP P00974 MET 87 ENGINEERED MUTATION SEQADV 5XX3 GLY B 14 UNP P00974 CYS 49 ENGINEERED MUTATION SEQADV 5XX3 ALA B 30 UNP P00974 CYS 65 ENGINEERED MUTATION SEQADV 5XX3 GLY B 38 UNP P00974 CYS 73 ENGINEERED MUTATION SEQADV 5XX3 ALA B 51 UNP P00974 CYS 86 ENGINEERED MUTATION SEQADV 5XX3 LEU B 52 UNP P00974 MET 87 ENGINEERED MUTATION SEQRES 1 A 58 ARG PRO ASP PHE CYS LEU GLU PRO PRO TYR THR GLY PRO SEQRES 2 A 58 GLY LYS ALA ARG ILE ILE ARG TYR PHE TYR ASN ALA LYS SEQRES 3 A 58 ALA GLY LEU ALA GLN THR PHE VAL TYR GLY GLY GLY ARG SEQRES 4 A 58 ALA LYS ARG ASN ASN PHE LYS SER ALA GLU ASP ALA LEU SEQRES 5 A 58 ARG THR CYS GLY GLY ALA SEQRES 1 B 58 ARG PRO ASP PHE CYS LEU GLU PRO PRO TYR THR GLY PRO SEQRES 2 B 58 GLY LYS ALA ARG ILE ILE ARG TYR PHE TYR ASN ALA LYS SEQRES 3 B 58 ALA GLY LEU ALA GLN THR PHE VAL TYR GLY GLY GLY ARG SEQRES 4 B 58 ALA LYS ARG ASN ASN PHE LYS SER ALA GLU ASP ALA LEU SEQRES 5 B 58 ARG THR CYS GLY GLY ALA HET SO4 A4001 5 HET SO4 A4002 5 HET SO4 A4003 5 HET SO4 B 101 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 HOH *284(H2 O) HELIX 1 AA1 SER A 47 GLY A 56 1 10 HELIX 2 AA2 PRO B 2 GLU B 7 5 6 HELIX 3 AA3 SER B 47 GLY B 56 1 10 SHEET 1 AA1 2 ILE A 18 ASN A 24 0 SHEET 2 AA1 2 LEU A 29 TYR A 35 -1 O TYR A 35 N ILE A 18 SHEET 1 AA2 2 ILE B 18 ASN B 24 0 SHEET 2 AA2 2 LEU B 29 TYR B 35 -1 O TYR B 35 N ILE B 18 SSBOND 1 CYS A 5 CYS A 55 1555 1555 2.07 SSBOND 2 CYS B 5 CYS B 55 1555 1555 2.09 SITE 1 AC1 8 PHE A 4 LYS A 41 ARG A 42 ARG A 53 SITE 2 AC1 8 HOH A4118 HOH A4138 ARG B 39 HOH B 259 SITE 1 AC2 10 ARG A 20 TYR A 35 ALA A 40 HOH A4107 SITE 2 AC2 10 HOH A4110 HOH A4112 HOH A4114 HOH A4191 SITE 3 AC2 10 ARG B 42 HOH B 226 SITE 1 AC3 6 ILE A 18 ARG A 20 LYS A 46 HOH A4101 SITE 2 AC3 6 HOH A4113 HOH A4186 SITE 1 AC4 9 ARG A 42 HOH A4102 ARG B 20 TYR B 35 SITE 2 AC4 9 ALA B 40 HOH B 205 HOH B 209 HOH B 227 SITE 3 AC4 9 HOH B 230 CRYST1 25.125 41.097 54.739 90.00 100.21 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.039801 0.000000 0.007169 0.00000 SCALE2 0.000000 0.024333 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018562 0.00000