HEADER DNA BINDING PROTEIN 03-JUL-17 5XXF TITLE CRYSTAL STRUCTURE OF POZ1, TPZ1 AND RAP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTECTION OF TELOMERES PROTEIN POZ1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-247; COMPND 5 SYNONYM: POT1-ASSOCIATED PROTEIN POZ1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTECTION OF TELOMERES PROTEIN TPZ1; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 478-508; COMPND 11 SYNONYM: MEIOTICALLY UP-REGULATED GENE 169 PROTEIN; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: RAP1; COMPND 15 CHAIN: E, F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 3 24843); SOURCE 4 ORGANISM_COMMON: FISSION YEAST; SOURCE 5 ORGANISM_TAXID: 284812; SOURCE 6 STRAIN: 972 / ATCC 24843; SOURCE 7 GENE: POZ1, SPAC19G12.13C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 15 24843); SOURCE 16 ORGANISM_COMMON: FISSION YEAST; SOURCE 17 ORGANISM_TAXID: 284812; SOURCE 18 STRAIN: 972 / ATCC 24843; SOURCE 19 GENE: TPZ1, MUG169, SPAC6F6.16C, SPAC6F6.18C; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PMAL-C2X; SOURCE 25 MOL_ID: 3; SOURCE 26 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 27 ORGANISM_TAXID: 4896; SOURCE 28 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 29 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 30 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 31 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 32 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TELOMERE, SHETERIN, HUB, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.XUE,H.CHEN,J.WU,M.LEI REVDAT 2 22-NOV-23 5XXF 1 REMARK REVDAT 1 20-DEC-17 5XXF 0 JRNL AUTH J.XUE,H.CHEN,J.WU,M.TAKEUCHI,H.INOUE,Y.LIU,H.SUN,Y.CHEN, JRNL AUTH 2 J.KANOH,M.LEI JRNL TITL STRUCTURE OF THE FISSION YEAST S. POMBE TELOMERIC JRNL TITL 2 TPZ1-POZ1-RAP1 COMPLEX. JRNL REF CELL RES. V. 27 1503 2017 JRNL REFN ISSN 1748-7838 JRNL PMID 29160296 JRNL DOI 10.1038/CR.2017.145 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 14259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 748 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 862 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4572 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.68000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.543 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.466 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.523 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.895 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.831 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4663 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4459 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6246 ; 1.118 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10280 ; 0.919 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 538 ; 5.609 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;39.257 ;24.385 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 917 ;18.322 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.183 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 659 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5166 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1124 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MOLECULAR REPLACEMENT REMARK 4 REMARK 4 5XXF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004328. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15449 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.73200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5XXE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM NITRATE, 20%(W/V) REMARK 280 PEG3350, PH 7.0, EVAPORATION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.57950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.02200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.87050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.02200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.57950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.87050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 71 REMARK 465 SER A 72 REMARK 465 SER A 73 REMARK 465 PHE A 74 REMARK 465 GLN A 75 REMARK 465 ASN A 76 REMARK 465 LEU A 77 REMARK 465 PRO A 78 REMARK 465 ILE A 79 REMARK 465 THR A 80 REMARK 465 GLN A 81 REMARK 465 THR A 82 REMARK 465 GLN A 83 REMARK 465 ASP A 117 REMARK 465 GLY A 118 REMARK 465 LEU A 119 REMARK 465 VAL A 120 REMARK 465 LYS A 121 REMARK 465 TYR A 122 REMARK 465 THR A 123 REMARK 465 ASN A 124 REMARK 465 GLU A 125 REMARK 465 LEU A 126 REMARK 465 LEU A 127 REMARK 465 LEU A 128 REMARK 465 ASN A 247 REMARK 465 LEU B 69 REMARK 465 ASP B 70 REMARK 465 PRO B 71 REMARK 465 SER B 72 REMARK 465 SER B 73 REMARK 465 PHE B 74 REMARK 465 GLN B 75 REMARK 465 ASN B 76 REMARK 465 LEU B 77 REMARK 465 PRO B 78 REMARK 465 ILE B 79 REMARK 465 THR B 80 REMARK 465 GLN B 81 REMARK 465 THR B 82 REMARK 465 GLN B 83 REMARK 465 PRO B 84 REMARK 465 ASP B 85 REMARK 465 SER B 86 REMARK 465 GLN B 87 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS F 473 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS D 482 ZN ZN D 601 1.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 192 CB - CA - C ANGL. DEV. = 20.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 69 -68.88 -141.37 REMARK 500 SER A 86 -5.69 75.75 REMARK 500 LYS A 192 -169.43 -112.79 REMARK 500 HIS C 488 149.72 -178.06 REMARK 500 ILE E 470 -68.09 -133.97 REMARK 500 SER B 1 32.92 -99.47 REMARK 500 ASN B 22 -156.77 -89.85 REMARK 500 SER B 46 1.19 -69.06 REMARK 500 TRP B 91 46.41 -86.62 REMARK 500 ASN B 129 97.86 -68.55 REMARK 500 PHE B 235 31.50 -99.69 REMARK 500 ILE F 470 -54.09 -123.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 49 NE2 REMARK 620 2 CYS C 479 SG 103.6 REMARK 620 3 CYS C 482 SG 97.0 107.6 REMARK 620 4 HIS C 488 NE2 131.8 109.2 105.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 49 NE2 REMARK 620 2 CYS D 479 SG 95.6 REMARK 620 3 HIS D 488 NE2 92.5 91.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XXE RELATED DB: PDB DBREF 5XXF A 2 247 UNP O13852 POZ1_SCHPO 2 247 DBREF 5XXF C 478 508 UNP O14246 TPZ1_SCHPO 478 508 DBREF 5XXF E 466 482 PDB 5XXF 5XXF 466 482 DBREF 5XXF B 2 247 UNP O13852 POZ1_SCHPO 2 247 DBREF 5XXF D 478 508 UNP O14246 TPZ1_SCHPO 478 508 DBREF 5XXF F 466 482 PDB 5XXF 5XXF 466 482 SEQADV 5XXF GLY A 0 UNP O13852 EXPRESSION TAG SEQADV 5XXF SER A 1 UNP O13852 EXPRESSION TAG SEQADV 5XXF GLY B 0 UNP O13852 EXPRESSION TAG SEQADV 5XXF SER B 1 UNP O13852 EXPRESSION TAG SEQRES 1 A 248 GLY SER ASN GLU LYS ILE ARG SER GLN SER VAL LEU ASN SEQRES 2 A 248 THR LEU GLU THR PHE PHE ILE LYS GLU ASN HIS TYR ASP SEQRES 3 A 248 MET GLN ARG GLU GLU SER SER ILE VAL ASN ALA CYS LEU SEQRES 4 A 248 ARG TYR LEU GLY TYR SER LYS SER MET CYS HIS GLU LYS SEQRES 5 A 248 MET PRO ILE PHE MET ASP ILE ALA PHE ILE GLU TYR CYS SEQRES 6 A 248 PHE ASN LEU SER LEU ASP PRO SER SER PHE GLN ASN LEU SEQRES 7 A 248 PRO ILE THR GLN THR GLN PRO ASP SER GLN GLN ILE LEU SEQRES 8 A 248 TRP GLU TYR SER LEU ILE SER ASN ALA LEU GLU ARG LEU SEQRES 9 A 248 GLU ASN ILE GLU LEU GLU ARG GLN ASN CYS MET ARG GLU SEQRES 10 A 248 ASP GLY LEU VAL LYS TYR THR ASN GLU LEU LEU LEU ASN SEQRES 11 A 248 LYS GLU THR LEU ASN ASN GLU ALA LEU LYS LEU TYR SER SEQRES 12 A 248 CYS ALA LYS ALA GLY ILE CYS ARG TRP MET ALA PHE HIS SEQRES 13 A 248 PHE LEU GLU GLN GLU PRO ILE ASP HIS ILE ASN PHE THR SEQRES 14 A 248 LYS PHE LEU GLN ASP TRP GLY SER HIS ASN GLU LYS GLU SEQRES 15 A 248 MET GLU ALA LEU GLN ARG LEU SER LYS HIS LYS ILE ARG SEQRES 16 A 248 LYS ARG LEU ILE TYR VAL SER GLN HIS LYS LYS LYS MET SEQRES 17 A 248 PRO TRP SER LYS PHE ASN SER VAL LEU SER ARG TYR ILE SEQRES 18 A 248 GLN CYS THR LYS LEU GLN LEU GLU VAL PHE CYS ASP TYR SEQRES 19 A 248 ASP PHE LYS GLN ARG GLU ILE VAL LYS MET LEU THR SER SEQRES 20 A 248 ASN SEQRES 1 C 31 ALA CYS GLU MET CYS ARG LEU GLY LEU PRO HIS GLY SER SEQRES 2 C 31 PHE PHE GLU LEU LEU ARG ASP TRP LYS LYS ILE GLU GLU SEQRES 3 C 31 PHE ARG ASN LYS SER SEQRES 1 E 17 ASN SER ASP ASN ILE PHE VAL LYS PRO GLY GLU ASP LEU SEQRES 2 E 17 GLU ILE PRO LEU SEQRES 1 B 248 GLY SER ASN GLU LYS ILE ARG SER GLN SER VAL LEU ASN SEQRES 2 B 248 THR LEU GLU THR PHE PHE ILE LYS GLU ASN HIS TYR ASP SEQRES 3 B 248 MET GLN ARG GLU GLU SER SER ILE VAL ASN ALA CYS LEU SEQRES 4 B 248 ARG TYR LEU GLY TYR SER LYS SER MET CYS HIS GLU LYS SEQRES 5 B 248 MET PRO ILE PHE MET ASP ILE ALA PHE ILE GLU TYR CYS SEQRES 6 B 248 PHE ASN LEU SER LEU ASP PRO SER SER PHE GLN ASN LEU SEQRES 7 B 248 PRO ILE THR GLN THR GLN PRO ASP SER GLN GLN ILE LEU SEQRES 8 B 248 TRP GLU TYR SER LEU ILE SER ASN ALA LEU GLU ARG LEU SEQRES 9 B 248 GLU ASN ILE GLU LEU GLU ARG GLN ASN CYS MET ARG GLU SEQRES 10 B 248 ASP GLY LEU VAL LYS TYR THR ASN GLU LEU LEU LEU ASN SEQRES 11 B 248 LYS GLU THR LEU ASN ASN GLU ALA LEU LYS LEU TYR SER SEQRES 12 B 248 CYS ALA LYS ALA GLY ILE CYS ARG TRP MET ALA PHE HIS SEQRES 13 B 248 PHE LEU GLU GLN GLU PRO ILE ASP HIS ILE ASN PHE THR SEQRES 14 B 248 LYS PHE LEU GLN ASP TRP GLY SER HIS ASN GLU LYS GLU SEQRES 15 B 248 MET GLU ALA LEU GLN ARG LEU SER LYS HIS LYS ILE ARG SEQRES 16 B 248 LYS ARG LEU ILE TYR VAL SER GLN HIS LYS LYS LYS MET SEQRES 17 B 248 PRO TRP SER LYS PHE ASN SER VAL LEU SER ARG TYR ILE SEQRES 18 B 248 GLN CYS THR LYS LEU GLN LEU GLU VAL PHE CYS ASP TYR SEQRES 19 B 248 ASP PHE LYS GLN ARG GLU ILE VAL LYS MET LEU THR SER SEQRES 20 B 248 ASN SEQRES 1 D 31 ALA CYS GLU MET CYS ARG LEU GLY LEU PRO HIS GLY SER SEQRES 2 D 31 PHE PHE GLU LEU LEU ARG ASP TRP LYS LYS ILE GLU GLU SEQRES 3 D 31 PHE ARG ASN LYS SER SEQRES 1 F 17 ASN SER ASP ASN ILE PHE VAL LYS PRO GLY GLU ASP LEU SEQRES 2 F 17 GLU ILE PRO LEU HET ZN C 601 1 HET ZN D 601 1 HETNAM ZN ZINC ION FORMUL 7 ZN 2(ZN 2+) FORMUL 9 HOH *11(H2 O) HELIX 1 AA1 SER A 1 ILE A 19 1 19 HELIX 2 AA2 GLU A 30 SER A 44 1 15 HELIX 3 AA3 LYS A 45 CYS A 48 5 4 HELIX 4 AA4 PRO A 53 PHE A 65 1 13 HELIX 5 AA5 GLU A 92 GLU A 116 1 25 HELIX 6 AA6 LYS A 130 GLU A 158 1 29 HELIX 7 AA7 ASP A 163 TRP A 174 1 12 HELIX 8 AA8 ASN A 178 LYS A 190 1 13 HELIX 9 AA9 LYS A 192 MET A 207 1 16 HELIX 10 AB1 PRO A 208 PHE A 230 1 23 HELIX 11 AB2 GLN A 237 SER A 246 1 10 HELIX 12 AB3 CYS C 479 LEU C 484 1 6 HELIX 13 AB4 GLY C 489 ASN C 506 1 18 HELIX 14 AB5 SER B 1 ILE B 19 1 19 HELIX 15 AB6 GLU B 30 SER B 44 1 15 HELIX 16 AB7 LYS B 45 CYS B 48 5 4 HELIX 17 AB8 PRO B 53 PHE B 65 1 13 HELIX 18 AB9 GLU B 92 GLU B 116 1 25 HELIX 19 AC1 ASN B 129 GLN B 159 1 31 HELIX 20 AC2 ASP B 163 GLN B 172 1 10 HELIX 21 AC3 ASN B 178 HIS B 191 1 14 HELIX 22 AC4 LYS B 192 MET B 207 1 16 HELIX 23 AC5 PRO B 208 ASP B 232 1 25 HELIX 24 AC6 GLN B 237 ASN B 247 1 11 HELIX 25 AC7 CYS D 479 GLY D 485 1 7 HELIX 26 AC8 GLY D 489 LYS D 507 1 19 LINK NE2 HIS A 49 ZN ZN C 601 1555 1555 2.13 LINK SG CYS C 479 ZN ZN C 601 1555 1555 2.47 LINK SG CYS C 482 ZN ZN C 601 1555 1555 1.94 LINK NE2 HIS C 488 ZN ZN C 601 1555 1555 2.01 LINK NE2 HIS B 49 ZN ZN D 601 1555 1555 2.15 LINK SG CYS D 479 ZN ZN D 601 1555 1555 2.30 LINK NE2 HIS D 488 ZN ZN D 601 1555 1555 2.33 CISPEP 1 GLU A 160 PRO A 161 0 0.43 CISPEP 2 GLU B 160 PRO B 161 0 1.42 CISPEP 3 TRP B 174 GLY B 175 0 9.76 SITE 1 AC1 4 HIS A 49 CYS C 479 CYS C 482 HIS C 488 SITE 1 AC2 4 HIS B 49 CYS D 479 CYS D 482 HIS D 488 CRYST1 81.159 85.741 116.044 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012321 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011663 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008617 0.00000