HEADER TRANSFERASE 08-JUL-17 5XYJ TITLE PURIFICATION,CRYSTALLIZATION AND STRUCTURAL ANALYSIS OF CYTOPLASTIC TITLE 2 ACETOACETYL-COA THIOLASE FROM SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYL-COA ACETYLTRANSFERASE; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: ACETOACETYL-COA THIOLASE,ERGOSTEROL BIOSYNTHESIS PROTEIN 10; COMPND 5 EC: 2.3.1.9; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 ATCC: 204508; SOURCE 8 GENE: ERG10, YPL028W, LPB3; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET22BN KEYWDS ACETOACETYL-COA THIOLASE, CLAISEN CONDENSION, THE MEVALONATE PATHWAY, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.F.ZHOU REVDAT 2 22-NOV-23 5XYJ 1 REMARK REVDAT 1 11-JUL-18 5XYJ 0 JRNL AUTH P.F.ZHOU JRNL TITL PURIFICATION,CRYSTALLIZATION AND STRUCTURAL ANALYSIS OF JRNL TITL 2 CYTOPLASTIC ACETOACETYL-COA THIOLASE FROM SACCHAROMYCES JRNL TITL 3 CEREVISIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 59159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3263 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3315 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 179 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 809 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : -1.41000 REMARK 3 B33 (A**2) : 1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.607 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5934 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5846 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8034 ; 1.252 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13458 ; 0.902 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 790 ; 5.615 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 230 ;40.811 ;25.652 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1002 ;13.541 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;14.548 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 936 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6830 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1248 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004384. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 V715 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 V715 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62459 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.51500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP V7.0 REMARK 200 STARTING MODEL: 2IB7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CITRATE (PH 6.5), REMARK 280 POLYETHYLENE GLYCOL 3350 (19%), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.40200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.62500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.40200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.62500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -89.25000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 780 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 835 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 572 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 729 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 744 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -9 REMARK 465 GLY B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 MET A -9 REMARK 465 GLY A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 49 -42.19 -137.95 REMARK 500 ALA B 67 74.16 56.13 REMARK 500 VAL B 90 -129.02 48.81 REMARK 500 LYS B 136 -67.46 74.43 REMARK 500 HIS B 288 -143.59 -153.19 REMARK 500 LYS A 49 -35.24 -143.32 REMARK 500 ALA A 67 74.49 53.20 REMARK 500 VAL A 90 -128.57 50.62 REMARK 500 LYS A 136 -67.54 72.29 REMARK 500 HIS A 288 -143.73 -154.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 965 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 966 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B 967 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B 968 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 839 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 840 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A 841 DISTANCE = 6.53 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 DBREF 5XYJ B 1 398 UNP P41338 THIL_YEAST 1 398 DBREF 5XYJ A 1 398 UNP P41338 THIL_YEAST 1 398 SEQADV 5XYJ MET B -9 UNP P41338 EXPRESSION TAG SEQADV 5XYJ GLY B -8 UNP P41338 EXPRESSION TAG SEQADV 5XYJ HIS B -7 UNP P41338 EXPRESSION TAG SEQADV 5XYJ HIS B -6 UNP P41338 EXPRESSION TAG SEQADV 5XYJ HIS B -5 UNP P41338 EXPRESSION TAG SEQADV 5XYJ HIS B -4 UNP P41338 EXPRESSION TAG SEQADV 5XYJ HIS B -3 UNP P41338 EXPRESSION TAG SEQADV 5XYJ HIS B -2 UNP P41338 EXPRESSION TAG SEQADV 5XYJ GLY B -1 UNP P41338 EXPRESSION TAG SEQADV 5XYJ SER B 0 UNP P41338 EXPRESSION TAG SEQADV 5XYJ ALA B 91 UNP P41338 CYS 91 ENGINEERED MUTATION SEQADV 5XYJ MET A -9 UNP P41338 EXPRESSION TAG SEQADV 5XYJ GLY A -8 UNP P41338 EXPRESSION TAG SEQADV 5XYJ HIS A -7 UNP P41338 EXPRESSION TAG SEQADV 5XYJ HIS A -6 UNP P41338 EXPRESSION TAG SEQADV 5XYJ HIS A -5 UNP P41338 EXPRESSION TAG SEQADV 5XYJ HIS A -4 UNP P41338 EXPRESSION TAG SEQADV 5XYJ HIS A -3 UNP P41338 EXPRESSION TAG SEQADV 5XYJ HIS A -2 UNP P41338 EXPRESSION TAG SEQADV 5XYJ GLY A -1 UNP P41338 EXPRESSION TAG SEQADV 5XYJ SER A 0 UNP P41338 EXPRESSION TAG SEQADV 5XYJ ALA A 91 UNP P41338 CYS 91 ENGINEERED MUTATION SEQRES 1 B 408 MET GLY HIS HIS HIS HIS HIS HIS GLY SER MET SER GLN SEQRES 2 B 408 ASN VAL TYR ILE VAL SER THR ALA ARG THR PRO ILE GLY SEQRES 3 B 408 SER PHE GLN GLY SER LEU SER SER LYS THR ALA VAL GLU SEQRES 4 B 408 LEU GLY ALA VAL ALA LEU LYS GLY ALA LEU ALA LYS VAL SEQRES 5 B 408 PRO GLU LEU ASP ALA SER LYS ASP PHE ASP GLU ILE ILE SEQRES 6 B 408 PHE GLY ASN VAL LEU SER ALA ASN LEU GLY GLN ALA PRO SEQRES 7 B 408 ALA ARG GLN VAL ALA LEU ALA ALA GLY LEU SER ASN HIS SEQRES 8 B 408 ILE VAL ALA SER THR VAL ASN LYS VAL ALA ALA SER ALA SEQRES 9 B 408 MET LYS ALA ILE ILE LEU GLY ALA GLN SER ILE LYS CYS SEQRES 10 B 408 GLY ASN ALA ASP VAL VAL VAL ALA GLY GLY CYS GLU SER SEQRES 11 B 408 MET THR ASN ALA PRO TYR TYR MET PRO ALA ALA ARG ALA SEQRES 12 B 408 GLY ALA LYS PHE GLY GLN THR VAL LEU VAL ASP GLY VAL SEQRES 13 B 408 GLU ARG ASP GLY LEU ASN ASP ALA TYR ASP GLY LEU ALA SEQRES 14 B 408 MET GLY VAL HIS ALA GLU LYS CYS ALA ARG ASP TRP ASP SEQRES 15 B 408 ILE THR ARG GLU GLN GLN ASP ASN PHE ALA ILE GLU SER SEQRES 16 B 408 TYR GLN LYS SER GLN LYS SER GLN LYS GLU GLY LYS PHE SEQRES 17 B 408 ASP ASN GLU ILE VAL PRO VAL THR ILE LYS GLY PHE ARG SEQRES 18 B 408 GLY LYS PRO ASP THR GLN VAL THR LYS ASP GLU GLU PRO SEQRES 19 B 408 ALA ARG LEU HIS VAL GLU LYS LEU ARG SER ALA ARG THR SEQRES 20 B 408 VAL PHE GLN LYS GLU ASN GLY THR VAL THR ALA ALA ASN SEQRES 21 B 408 ALA SER PRO ILE ASN ASP GLY ALA ALA ALA VAL ILE LEU SEQRES 22 B 408 VAL SER GLU LYS VAL LEU LYS GLU LYS ASN LEU LYS PRO SEQRES 23 B 408 LEU ALA ILE ILE LYS GLY TRP GLY GLU ALA ALA HIS GLN SEQRES 24 B 408 PRO ALA ASP PHE THR TRP ALA PRO SER LEU ALA VAL PRO SEQRES 25 B 408 LYS ALA LEU LYS HIS ALA GLY ILE GLU ASP ILE ASN SER SEQRES 26 B 408 VAL ASP TYR PHE GLU PHE ASN GLU ALA PHE SER VAL VAL SEQRES 27 B 408 GLY LEU VAL ASN THR LYS ILE LEU LYS LEU ASP PRO SER SEQRES 28 B 408 LYS VAL ASN VAL TYR GLY GLY ALA VAL ALA LEU GLY HIS SEQRES 29 B 408 PRO LEU GLY CYS SER GLY ALA ARG VAL VAL VAL THR LEU SEQRES 30 B 408 LEU SER ILE LEU GLN GLN GLU GLY GLY LYS ILE GLY VAL SEQRES 31 B 408 ALA ALA ILE CYS ASN GLY GLY GLY GLY ALA SER SER ILE SEQRES 32 B 408 VAL ILE GLU LYS ILE SEQRES 1 A 408 MET GLY HIS HIS HIS HIS HIS HIS GLY SER MET SER GLN SEQRES 2 A 408 ASN VAL TYR ILE VAL SER THR ALA ARG THR PRO ILE GLY SEQRES 3 A 408 SER PHE GLN GLY SER LEU SER SER LYS THR ALA VAL GLU SEQRES 4 A 408 LEU GLY ALA VAL ALA LEU LYS GLY ALA LEU ALA LYS VAL SEQRES 5 A 408 PRO GLU LEU ASP ALA SER LYS ASP PHE ASP GLU ILE ILE SEQRES 6 A 408 PHE GLY ASN VAL LEU SER ALA ASN LEU GLY GLN ALA PRO SEQRES 7 A 408 ALA ARG GLN VAL ALA LEU ALA ALA GLY LEU SER ASN HIS SEQRES 8 A 408 ILE VAL ALA SER THR VAL ASN LYS VAL ALA ALA SER ALA SEQRES 9 A 408 MET LYS ALA ILE ILE LEU GLY ALA GLN SER ILE LYS CYS SEQRES 10 A 408 GLY ASN ALA ASP VAL VAL VAL ALA GLY GLY CYS GLU SER SEQRES 11 A 408 MET THR ASN ALA PRO TYR TYR MET PRO ALA ALA ARG ALA SEQRES 12 A 408 GLY ALA LYS PHE GLY GLN THR VAL LEU VAL ASP GLY VAL SEQRES 13 A 408 GLU ARG ASP GLY LEU ASN ASP ALA TYR ASP GLY LEU ALA SEQRES 14 A 408 MET GLY VAL HIS ALA GLU LYS CYS ALA ARG ASP TRP ASP SEQRES 15 A 408 ILE THR ARG GLU GLN GLN ASP ASN PHE ALA ILE GLU SER SEQRES 16 A 408 TYR GLN LYS SER GLN LYS SER GLN LYS GLU GLY LYS PHE SEQRES 17 A 408 ASP ASN GLU ILE VAL PRO VAL THR ILE LYS GLY PHE ARG SEQRES 18 A 408 GLY LYS PRO ASP THR GLN VAL THR LYS ASP GLU GLU PRO SEQRES 19 A 408 ALA ARG LEU HIS VAL GLU LYS LEU ARG SER ALA ARG THR SEQRES 20 A 408 VAL PHE GLN LYS GLU ASN GLY THR VAL THR ALA ALA ASN SEQRES 21 A 408 ALA SER PRO ILE ASN ASP GLY ALA ALA ALA VAL ILE LEU SEQRES 22 A 408 VAL SER GLU LYS VAL LEU LYS GLU LYS ASN LEU LYS PRO SEQRES 23 A 408 LEU ALA ILE ILE LYS GLY TRP GLY GLU ALA ALA HIS GLN SEQRES 24 A 408 PRO ALA ASP PHE THR TRP ALA PRO SER LEU ALA VAL PRO SEQRES 25 A 408 LYS ALA LEU LYS HIS ALA GLY ILE GLU ASP ILE ASN SER SEQRES 26 A 408 VAL ASP TYR PHE GLU PHE ASN GLU ALA PHE SER VAL VAL SEQRES 27 A 408 GLY LEU VAL ASN THR LYS ILE LEU LYS LEU ASP PRO SER SEQRES 28 A 408 LYS VAL ASN VAL TYR GLY GLY ALA VAL ALA LEU GLY HIS SEQRES 29 A 408 PRO LEU GLY CYS SER GLY ALA ARG VAL VAL VAL THR LEU SEQRES 30 A 408 LEU SER ILE LEU GLN GLN GLU GLY GLY LYS ILE GLY VAL SEQRES 31 A 408 ALA ALA ILE CYS ASN GLY GLY GLY GLY ALA SER SER ILE SEQRES 32 A 408 VAL ILE GLU LYS ILE HET GOL B 401 6 HET GOL A 401 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *809(H2 O) HELIX 1 AA1 THR B 26 LYS B 41 1 16 HELIX 2 AA2 ALA B 67 ALA B 76 1 10 HELIX 3 AA3 LYS B 89 ALA B 91 5 3 HELIX 4 AA4 ALA B 92 CYS B 107 1 16 HELIX 5 AA5 GLY B 145 GLY B 150 1 6 HELIX 6 AA6 ALA B 159 TRP B 171 1 13 HELIX 7 AA7 THR B 174 GLY B 196 1 23 HELIX 8 AA8 GLU B 223 LEU B 227 5 5 HELIX 9 AA9 HIS B 228 SER B 234 1 7 HELIX 10 AB1 GLU B 266 LYS B 272 1 7 HELIX 11 AB2 GLN B 289 TRP B 295 5 7 HELIX 12 AB3 ALA B 296 ALA B 308 1 13 HELIX 13 AB4 ASP B 312 VAL B 316 5 5 HELIX 14 AB5 PHE B 325 LYS B 337 1 13 HELIX 15 AB6 ASP B 339 VAL B 343 5 5 HELIX 16 AB7 GLY B 348 GLY B 353 1 6 HELIX 17 AB8 PRO B 355 GLY B 375 1 21 HELIX 18 AB9 THR A 26 LYS A 41 1 16 HELIX 19 AC1 ALA A 67 ALA A 76 1 10 HELIX 20 AC2 LYS A 89 ALA A 91 5 3 HELIX 21 AC3 ALA A 92 CYS A 107 1 16 HELIX 22 AC4 GLY A 145 GLY A 150 1 6 HELIX 23 AC5 ALA A 159 ASP A 172 1 14 HELIX 24 AC6 THR A 174 GLU A 195 1 22 HELIX 25 AC7 GLU A 223 LEU A 227 5 5 HELIX 26 AC8 HIS A 228 SER A 234 1 7 HELIX 27 AC9 GLU A 266 LYS A 272 1 7 HELIX 28 AD1 GLN A 289 THR A 294 5 6 HELIX 29 AD2 TRP A 295 ALA A 308 1 14 HELIX 30 AD3 ASP A 312 VAL A 316 5 5 HELIX 31 AD4 PHE A 325 LEU A 336 1 12 HELIX 32 AD5 ASP A 339 VAL A 343 5 5 HELIX 33 AD6 GLY A 348 GLY A 353 1 6 HELIX 34 AD7 PRO A 355 GLU A 374 1 20 SHEET 1 AA1 5 GLY B 16 SER B 17 0 SHEET 2 AA1 5 ASN B 255 SER B 265 -1 O ASP B 256 N GLY B 16 SHEET 3 AA1 5 VAL B 112 SER B 120 -1 N VAL B 113 O LEU B 263 SHEET 4 AA1 5 GLU B 53 GLY B 57 1 N GLY B 57 O GLY B 116 SHEET 5 AA1 5 VAL B 83 VAL B 87 1 O VAL B 83 N ILE B 54 SHEET 1 AA2 7 GLY B 16 SER B 17 0 SHEET 2 AA2 7 ASN B 255 SER B 265 -1 O ASP B 256 N GLY B 16 SHEET 3 AA2 7 VAL B 5 ARG B 12 -1 N ALA B 11 O ALA B 260 SHEET 4 AA2 7 ALA B 278 ALA B 287 -1 O ILE B 280 N VAL B 5 SHEET 5 AA2 7 GLY B 389 LYS B 397 -1 O VAL B 394 N GLY B 282 SHEET 6 AA2 7 ILE B 378 ASN B 385 -1 N ASN B 385 O GLY B 389 SHEET 7 AA2 7 TYR B 318 PHE B 321 1 N GLU B 320 O ALA B 382 SHEET 1 AA3 2 TYR B 126 TYR B 127 0 SHEET 2 AA3 2 VAL B 143 ASP B 144 -1 O VAL B 143 N TYR B 127 SHEET 1 AA4 2 VAL B 205 ILE B 207 0 SHEET 2 AA4 2 THR B 216 VAL B 218 -1 O THR B 216 N ILE B 207 SHEET 1 AA5 5 GLY A 16 SER A 17 0 SHEET 2 AA5 5 ASN A 255 SER A 265 -1 O ASP A 256 N GLY A 16 SHEET 3 AA5 5 VAL A 112 SER A 120 -1 N VAL A 113 O LEU A 263 SHEET 4 AA5 5 GLU A 53 GLY A 57 1 N GLY A 57 O GLY A 116 SHEET 5 AA5 5 VAL A 83 VAL A 87 1 O VAL A 83 N ILE A 54 SHEET 1 AA6 7 GLY A 16 SER A 17 0 SHEET 2 AA6 7 ASN A 255 SER A 265 -1 O ASP A 256 N GLY A 16 SHEET 3 AA6 7 VAL A 5 ARG A 12 -1 N ALA A 11 O ALA A 260 SHEET 4 AA6 7 ALA A 278 ALA A 287 -1 O ILE A 280 N VAL A 5 SHEET 5 AA6 7 GLY A 389 LYS A 397 -1 O VAL A 394 N GLY A 282 SHEET 6 AA6 7 ILE A 378 ASN A 385 -1 N ALA A 381 O ILE A 393 SHEET 7 AA6 7 TYR A 318 PHE A 321 1 N GLU A 320 O ALA A 382 SHEET 1 AA7 2 TYR A 126 TYR A 127 0 SHEET 2 AA7 2 VAL A 143 ASP A 144 -1 O VAL A 143 N TYR A 127 SHEET 1 AA8 2 VAL A 205 ILE A 207 0 SHEET 2 AA8 2 THR A 216 VAL A 218 -1 O THR A 216 N ILE A 207 SITE 1 AC1 7 LEU B 151 SER B 252 PHE B 325 HIS B 354 SITE 2 AC1 7 HOH B 543 HOH B 638 HOH B 777 SITE 1 AC2 9 LEU A 151 SER A 252 PHE A 325 HIS A 354 SITE 2 AC2 9 HOH A 520 HOH A 537 HOH A 558 HOH A 564 SITE 3 AC2 9 HOH A 739 CRYST1 78.804 89.250 119.189 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012690 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011204 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008390 0.00000