HEADER DNA BINDING PROTEIN 09-JUL-17 5XYN TITLE THE CRYSTAL STRUCTURE OF CSM2-PSY3-SHU1-SHU2 COMPLEX FROM BUDDING TITLE 2 YEAST COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLATINUM SENSITIVITY PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CHROMOSOME SEGREGATION IN MEIOSIS PROTEIN 2; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SUPPRESSOR OF HU SENSITIVITY INVOLVED IN RECOMBINATION COMPND 11 PROTEIN 1; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: SUPPRESSOR OF HYDROXYUREA SENSITIVITY PROTEIN 2; COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: PSY3, YLR376C, L8039.17; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 12 S288C); SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: CSM2, YIL132C; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 21 S288C); SOURCE 22 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 23 ORGANISM_TAXID: 559292; SOURCE 24 STRAIN: ATCC 204508 / S288C; SOURCE 25 GENE: SHU1, YHL006C; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 MOL_ID: 4; SOURCE 29 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 30 S288C); SOURCE 31 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 32 ORGANISM_TAXID: 559292; SOURCE 33 STRAIN: ATCC 204508 / S288C; SOURCE 34 GENE: SHU2, YDR078C, D4436; SOURCE 35 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 36 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMLEX, REPLICATION, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.ZHANG,T.ZHANG,J.DING REVDAT 3 27-MAR-24 5XYN 1 REMARK REVDAT 2 27-DEC-17 5XYN 1 JRNL REVDAT 1 08-NOV-17 5XYN 0 JRNL AUTH S.ZHANG,L.WANG,Y.TAO,T.BAI,R.LU,T.ZHANG,J.CHEN,J.DING JRNL TITL STRUCTURAL BASIS FOR THE FUNCTIONAL ROLE OF THE SHU COMPLEX JRNL TITL 2 IN HOMOLOGOUS RECOMBINATION. JRNL REF NUCLEIC ACIDS RES. V. 45 13068 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 29069504 JRNL DOI 10.1093/NAR/GKX992 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 22654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1223 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1381 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6027 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.444 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.900 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6148 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8333 ; 1.468 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 732 ;11.117 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 283 ;39.192 ;24.240 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1072 ;17.902 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;19.851 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 969 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4546 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XYN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004389. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24375 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.69200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, PH 6.5, 0.2M POTASSIUM REMARK 280 SODIUM TARTRATE, 10% PEG 10000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.43500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 87.12000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 87.12000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.15250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 87.12000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 87.12000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.71750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 87.12000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 87.12000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.15250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 87.12000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 87.12000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.71750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.43500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 63 REMARK 465 THR A 64 REMARK 465 THR A 65 REMARK 465 GLY A 66 REMARK 465 SER A 145 REMARK 465 ASP A 146 REMARK 465 LYS A 147 REMARK 465 ASN A 148 REMARK 465 TYR A 149 REMARK 465 ASP A 150 REMARK 465 VAL A 151 REMARK 465 ILE A 152 REMARK 465 ASN A 153 REMARK 465 LEU A 154 REMARK 465 SER A 155 REMARK 465 ASP A 194 REMARK 465 LYS A 195 REMARK 465 TRP A 196 REMARK 465 SER A 197 REMARK 465 ILE A 198 REMARK 465 LYS A 199 REMARK 465 ARG A 200 REMARK 465 LYS A 201 REMARK 465 SER A 202 REMARK 465 GLY A 203 REMARK 465 VAL A 204 REMARK 465 THR A 205 REMARK 465 VAL A 228 REMARK 465 ASP A 229 REMARK 465 GLY A 230 REMARK 465 ARG A 231 REMARK 465 LEU A 240 REMARK 465 GLU A 241 REMARK 465 GLU A 242 REMARK 465 GLN B 99 REMARK 465 ARG B 100 REMARK 465 GLY B 101 REMARK 465 THR B 102 REMARK 465 GLU B 103 REMARK 465 ASP B 104 REMARK 465 ALA B 105 REMARK 465 VAL B 106 REMARK 465 ASN B 178 REMARK 465 ASN B 179 REMARK 465 ASN B 180 REMARK 465 THR B 181 REMARK 465 ARG B 182 REMARK 465 THR B 183 REMARK 465 SER B 184 REMARK 465 SER B 185 REMARK 465 VAL B 186 REMARK 465 ARG B 187 REMARK 465 SER B 188 REMARK 465 LYS B 189 REMARK 465 ARG B 190 REMARK 465 ARG B 191 REMARK 465 ARG B 192 REMARK 465 ILE B 193 REMARK 465 LYS B 194 REMARK 465 ASN B 195 REMARK 465 GLU B 213 REMARK 465 ASP C 18 REMARK 465 GLN C 19 REMARK 465 SER C 20 REMARK 465 THR C 102 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 LYS D 3 REMARK 465 ASN D 19 REMARK 465 ASP D 20 REMARK 465 ARG D 60 REMARK 465 VAL D 61 REMARK 465 HIS D 62 REMARK 465 ASN D 63 REMARK 465 LYS D 64 REMARK 465 GLU D 65 REMARK 465 GLY D 66 REMARK 465 ASN D 67 REMARK 465 GLU D 68 REMARK 465 HIS D 69 REMARK 465 GLY D 83 REMARK 465 SER D 84 REMARK 465 SER D 85 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 32 CG CD1 CD2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 ASN A 62 CG OD1 ND2 REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 GLN A 86 CG CD OE1 NE2 REMARK 470 HIS A 87 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 124 CG OD1 OD2 REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 ASP A 213 CG OD1 OD2 REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 ARG A 236 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 GLN B 22 CG CD OE1 NE2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 GLU B 31 CG CD OE1 OE2 REMARK 470 HIS B 32 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 50 CG CD OE1 NE2 REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 LYS B 167 CG CD CE NZ REMARK 470 LYS B 176 CG CD CE NZ REMARK 470 LYS B 177 CG CD CE NZ REMARK 470 ASN C 84 CG OD1 ND2 REMARK 470 GLN C 87 CG CD OE1 NE2 REMARK 470 GLN C 103 CG CD OE1 NE2 REMARK 470 ASP C 104 CG OD1 OD2 REMARK 470 LYS D 10 CG CD CE NZ REMARK 470 LYS D 202 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG C 117 OG SER C 121 1.92 REMARK 500 O ILE A 188 OG1 THR A 191 2.17 REMARK 500 NH2 ARG D 38 OE1 GLU D 118 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 123 C - N - CD ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 51 -63.25 -91.63 REMARK 500 ILE A 78 -60.46 -122.64 REMARK 500 PRO A 181 -178.95 -63.34 REMARK 500 PRO A 208 43.90 -85.67 REMARK 500 SER B 14 76.29 36.24 REMARK 500 ASN B 27 -63.36 -100.98 REMARK 500 HIS B 32 -13.21 81.42 REMARK 500 SER B 44 40.27 80.14 REMARK 500 PRO B 47 56.05 -65.45 REMARK 500 TYR B 207 -54.32 -132.94 REMARK 500 ASN C 49 -52.47 -127.41 REMARK 500 ARG C 58 -61.04 -96.94 REMARK 500 ASN D 17 -60.44 -107.89 REMARK 500 THR D 22 18.68 55.27 REMARK 500 ASP D 100 -21.16 73.74 REMARK 500 TRP D 112 71.27 57.79 REMARK 500 GLU D 132 -16.99 68.97 REMARK 500 SER D 188 -169.69 -122.69 REMARK 500 THR D 197 -62.72 -126.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 114 SG REMARK 620 2 CYS D 116 SG 121.6 REMARK 620 3 CYS D 176 SG 110.2 103.3 REMARK 620 4 HIS D 178 ND1 108.4 109.2 102.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 301 DBREF 5XYN A 1 242 UNP Q12318 PSY3_YEAST 1 242 DBREF 5XYN B 1 213 UNP P40465 CSM2_YEAST 1 213 DBREF 5XYN C 1 150 UNP P38751 SHU1_YEAST 1 150 DBREF 5XYN D 1 223 UNP P38957 SHU2_YEAST 1 223 SEQADV 5XYN GLY A -1 UNP Q12318 EXPRESSION TAG SEQADV 5XYN SER A 0 UNP Q12318 EXPRESSION TAG SEQRES 1 A 244 GLY SER MET GLU VAL LEU LYS ASN ILE ARG ILE TYR PRO SEQRES 2 A 244 LEU SER ASN PHE ILE THR SER THR LYS ASN TYR ILE ASN SEQRES 3 A 244 LEU PRO ASN GLU LEU ARG ASN LEU ILE SER GLU GLU GLN SEQRES 4 A 244 GLU SER LYS LEU GLY PHE LEU HIS ILE ILE GLU SER ASP SEQRES 5 A 244 PHE LYS PRO SER VAL ALA LEU GLN LYS LEU VAL ASN CYS SEQRES 6 A 244 THR THR GLY ASP GLU LYS ILE LEU ILE ILE ASP ILE VAL SEQRES 7 A 244 SER ILE TRP SER GLN GLN LYS GLN ARG GLN HIS GLY ALA SEQRES 8 A 244 ILE TYR MET ASN SER LEU SER CYS ILE ASN ILE THR GLY SEQRES 9 A 244 LEU ILE VAL PHE LEU GLU LEU LEU TYR ASP SER PRO MET SEQRES 10 A 244 ASP ALA LEU ARG ARG CYS GLN VAL ASP ASN PHE ASN PHE SEQRES 11 A 244 GLN LEU ARG GLY ILE VAL ILE ASP ASN LEU SER PHE LEU SEQRES 12 A 244 ASN PHE GLU SER ASP LYS ASN TYR ASP VAL ILE ASN LEU SEQRES 13 A 244 SER LYS PHE GLU LYS LEU PHE LYS ILE LEU ARG LYS LEU SEQRES 14 A 244 ARG GLU PHE LEU GLY CYS TRP ILE ILE THR LYS SER PHE SEQRES 15 A 244 PRO THR ASP PHE TYR ASN GLY ILE GLU ASN THR LEU VAL SEQRES 16 A 244 ASP LYS TRP SER ILE LYS ARG LYS SER GLY VAL THR LEU SEQRES 17 A 244 TYR PRO THR LYS LEU PRO ASP SER TYR MET LYS GLY MET SEQRES 18 A 244 ASP LEU ILE ILE TYR ARG GLU VAL VAL ASP GLY ARG PRO SEQRES 19 A 244 GLN TYR ARG ARG ILE ALA ALA LEU GLU GLU SEQRES 1 B 213 MET GLU TYR GLU ASP LEU GLU LEU ILE THR ILE TRP PRO SEQRES 2 B 213 SER PRO THR LYS ASN LYS LEU CYS GLN PHE ILE LYS GLN SEQRES 3 B 213 ASN LEU SER LYS GLU HIS VAL VAL THR GLN LEU PHE PHE SEQRES 4 B 213 ILE ASP ALA THR SER SER PHE PRO LEU SER GLN PHE GLN SEQRES 5 B 213 LYS LEU VAL PRO PRO THR LEU PRO GLU ASN VAL ARG ILE SEQRES 6 B 213 TYR GLU ASN ILE ARG ILE ASN THR CYS LEU ASP LEU GLU SEQRES 7 B 213 GLU LEU SER ALA ILE THR VAL LYS LEU LEU GLN ILE LEU SEQRES 8 B 213 SER MET ASN LYS ILE ASN ALA GLN ARG GLY THR GLU ASP SEQRES 9 B 213 ALA VAL THR GLU PRO LEU LYS ILE ILE LEU TYR ILE ASN SEQRES 10 B 213 GLY LEU GLU VAL MET PHE ARG ASN SER GLN PHE LYS SER SEQRES 11 B 213 SER PRO GLN ARG SER HIS GLU LEU LEU ARG ASP THR LEU SEQRES 12 B 213 LEU LYS LEU ARG VAL MET GLY ASN ASP GLU ASN GLU ASN SEQRES 13 B 213 ALA SER ILE ARG THR LEU LEU GLU PHE PRO LYS GLU GLN SEQRES 14 B 213 LEU LEU ASP TYR TYR LEU LYS LYS ASN ASN ASN THR ARG SEQRES 15 B 213 THR SER SER VAL ARG SER LYS ARG ARG ARG ILE LYS ASN SEQRES 16 B 213 GLY ASP SER LEU ALA GLU TYR ILE TRP LYS TYR TYR ALA SEQRES 17 B 213 ASP SER LEU PHE GLU SEQRES 1 C 150 MET GLN PHE GLU GLU ARG LEU GLN GLN LEU VAL GLU SER SEQRES 2 C 150 ASP TRP SER LEU ASP GLN SER SER PRO ASN VAL LEU VAL SEQRES 3 C 150 ILE VAL LEU GLY ASP THR ALA ARG LYS TYR VAL GLU LEU SEQRES 4 C 150 GLY GLY LEU LYS GLU HIS VAL THR THR ASN THR VAL ALA SEQRES 5 C 150 GLY HIS VAL ALA SER ARG GLU ARG VAL SER VAL VAL PHE SEQRES 6 C 150 LEU GLY ARG VAL LYS TYR LEU TYR MET TYR LEU THR ARG SEQRES 7 C 150 MET GLN ALA GLN ALA ASN GLY PRO GLN TYR SER ASN VAL SEQRES 8 C 150 LEU VAL TYR GLY LEU TRP ASP LEU THR ALA THR GLN ASP SEQRES 9 C 150 GLY PRO GLN GLN LEU ARG LEU LEU SER LEU VAL LEU ARG SEQRES 10 C 150 GLN CYS LEU SER LEU PRO SER LYS VAL GLU PHE TYR PRO SEQRES 11 C 150 GLU PRO PRO SER SER SER VAL PRO ALA ARG LEU LEU ARG SEQRES 12 C 150 PHE TRP ASP HIS ILE ILE ARG SEQRES 1 D 223 MET SER LYS ASP VAL ILE GLU TYR SER LYS LEU PHE ALA SEQRES 2 D 223 LYS LEU VAL ASN THR ASN ASP ASP THR LYS LEU ASP ASP SEQRES 3 D 223 THR ILE ALA SER PHE LEU TYR TYR MET PHE PRO ARG GLU SEQRES 4 D 223 LEU PHE ILE ARG ALA ILE SER LEU LEU GLU SER SER ASP SEQRES 5 D 223 MET PHE ILE TYR ILE LEU ASP ARG VAL HIS ASN LYS GLU SEQRES 6 D 223 GLY ASN GLU HIS THR SER LEU ILE ASP VAL LEU VAL ASP SEQRES 7 D 223 GLU PHE TYR LYS GLY SER SER ASN SER LEU LEU GLU TYR SEQRES 8 D 223 ARG LEU ILE VAL LYS ASP THR ASN ASP GLY ALA PRO PRO SEQRES 9 D 223 ILE LEU VAL ASP ILE ALA HIS TRP PHE CYS SER CYS GLU SEQRES 10 D 223 GLU PHE CYS LYS TYR PHE HIS GLU ALA LEU GLU LYS THR SEQRES 11 D 223 ASP GLU LYS GLU GLU LEU HIS ASP VAL LEU ILE ASN GLU SEQRES 12 D 223 VAL ASP ASP HIS LEU GLN PHE SER ASP ASP ARG PHE ALA SEQRES 13 D 223 GLN LEU ASP PRO HIS SER LEU SER LYS GLN TRP TYR PHE SEQRES 14 D 223 LYS PHE ASP LYS VAL CYS CYS SER HIS LEU LEU ALA PHE SEQRES 15 D 223 SER ILE LEU LEU ARG SER SER ILE ASN VAL LEU LYS PHE SEQRES 16 D 223 PHE THR VAL ASN SER ASN LYS VAL PHE VAL ILE ALA ILE SEQRES 17 D 223 ASP ASN ILE ASP GLU TRP LEU ASN LEU HIS ILE ASN ILE SEQRES 18 D 223 VAL GLU HET ZN D 301 1 HETNAM ZN ZINC ION FORMUL 5 ZN ZN 2+ HELIX 1 AA1 GLY A -1 ASN A 6 1 8 HELIX 2 AA2 LEU A 12 ILE A 16 1 5 HELIX 3 AA3 PRO A 26 ILE A 33 5 8 HELIX 4 AA4 SER A 34 SER A 39 1 6 HELIX 5 AA5 SER A 54 ASN A 62 1 9 HELIX 6 AA6 GLN A 81 ARG A 85 5 5 HELIX 7 AA7 SER A 94 ILE A 98 5 5 HELIX 8 AA8 ASN A 99 SER A 113 1 15 HELIX 9 AA9 SER A 113 ARG A 120 1 8 HELIX 10 AB1 ASN A 137 LEU A 141 5 5 HELIX 11 AB2 PHE A 157 GLY A 172 1 16 HELIX 12 AB3 PRO A 181 THR A 191 5 11 HELIX 13 AB4 PRO A 212 MET A 219 1 8 HELIX 14 AB5 GLU B 2 LEU B 6 5 5 HELIX 15 AB6 THR B 16 SER B 29 1 14 HELIX 16 AB7 PRO B 47 VAL B 55 1 9 HELIX 17 AB8 LEU B 59 GLU B 61 5 3 HELIX 18 AB9 ASN B 62 ASN B 68 1 7 HELIX 19 AC1 ASP B 76 ILE B 96 1 21 HELIX 20 AC2 GLY B 118 SER B 130 1 13 HELIX 21 AC3 SER B 131 ASP B 152 1 22 HELIX 22 AC4 LEU B 170 LYS B 177 1 8 HELIX 23 AC5 SER B 198 TYR B 207 1 10 HELIX 24 AC6 GLN C 2 GLU C 12 1 11 HELIX 25 AC7 GLY C 30 LEU C 39 1 10 HELIX 26 AC8 THR C 50 ARG C 60 1 11 HELIX 27 AC9 ARG C 68 GLN C 82 1 15 HELIX 28 AD1 GLY C 95 THR C 100 1 6 HELIX 29 AD2 ASP C 104 LEU C 120 1 17 HELIX 30 AD3 SER C 136 ARG C 150 1 15 HELIX 31 AD4 GLU D 7 LYS D 14 1 8 HELIX 32 AD5 ASP D 25 PHE D 36 1 12 HELIX 33 AD6 GLU D 39 SER D 50 1 12 HELIX 34 AD7 SER D 71 LYS D 82 1 12 HELIX 35 AD8 CYS D 116 LYS D 129 1 14 HELIX 36 AD9 GLU D 135 LEU D 140 1 6 HELIX 37 AE1 ASP D 146 PHE D 150 5 5 HELIX 38 AE2 CYS D 176 ARG D 187 1 12 HELIX 39 AE3 SER D 189 PHE D 196 1 8 HELIX 40 AE4 ASN D 210 HIS D 218 1 9 SHEET 1 AA1 5 ILE A 9 PRO A 11 0 SHEET 2 AA1 5 VAL C 61 LEU C 66 -1 O VAL C 63 N TYR A 10 SHEET 3 AA1 5 VAL C 24 LEU C 29 1 N VAL C 26 O SER C 62 SHEET 4 AA1 5 ASN C 90 TYR C 94 1 O LEU C 92 N ILE C 27 SHEET 5 AA1 5 LYS C 125 TYR C 129 1 O GLU C 127 N VAL C 93 SHEET 1 AA2 2 THR A 17 SER A 18 0 SHEET 2 AA2 2 THR C 47 THR C 48 1 O THR C 48 N THR A 17 SHEET 1 AA3 7 ALA A 89 MET A 92 0 SHEET 2 AA3 7 LYS A 69 ASP A 74 1 N ILE A 72 O ILE A 90 SHEET 3 AA3 7 LEU A 130 ASP A 136 1 O VAL A 134 N ILE A 73 SHEET 4 AA3 7 TRP A 174 SER A 179 1 O TRP A 174 N ILE A 133 SHEET 5 AA3 7 PHE A 43 ILE A 47 1 N ILE A 46 O THR A 177 SHEET 6 AA3 7 LEU A 221 GLU A 226 1 O ILE A 223 N ILE A 47 SHEET 7 AA3 7 GLN A 233 ARG A 236 -1 O GLN A 233 N GLU A 226 SHEET 1 AA4 6 ILE B 69 THR B 73 0 SHEET 2 AA4 6 VAL B 34 ASP B 41 1 N PHE B 39 O ARG B 70 SHEET 3 AA4 6 LEU B 110 ASN B 117 1 O TYR B 115 N ILE B 40 SHEET 4 AA4 6 ALA B 157 PHE B 165 1 O ARG B 160 N LEU B 114 SHEET 5 AA4 6 ILE B 9 PRO B 13 1 N TRP B 12 O LEU B 163 SHEET 6 AA4 6 SER B 210 LEU B 211 1 O SER B 210 N ILE B 11 SHEET 1 AA5 5 PHE D 113 CYS D 114 0 SHEET 2 AA5 5 ILE D 105 ASP D 108 -1 N ASP D 108 O PHE D 113 SHEET 3 AA5 5 TYR D 91 VAL D 95 -1 N LEU D 93 O VAL D 107 SHEET 4 AA5 5 MET D 53 ILE D 57 -1 N PHE D 54 O ILE D 94 SHEET 5 AA5 5 VAL D 203 ALA D 207 1 O PHE D 204 N MET D 53 SHEET 1 AA6 3 ILE D 141 VAL D 144 0 SHEET 2 AA6 3 GLN D 166 PHE D 169 -1 O TYR D 168 N ASN D 142 SHEET 3 AA6 3 GLN D 157 LEU D 158 -1 N LEU D 158 O TRP D 167 LINK SG CYS D 114 ZN ZN D 301 1555 1555 2.33 LINK SG CYS D 116 ZN ZN D 301 1555 1555 2.34 LINK SG CYS D 176 ZN ZN D 301 1555 1555 2.33 LINK ND1 HIS D 178 ZN ZN D 301 1555 1555 2.21 CISPEP 1 ASP A 136 ASN A 137 0 17.57 CISPEP 2 TYR C 129 PRO C 130 0 -10.51 SITE 1 AC1 4 CYS D 114 CYS D 116 CYS D 176 HIS D 178 CRYST1 174.240 174.240 102.870 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005739 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005739 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009721 0.00000