HEADER TRANSFERASE 11-JUL-17 5XZ2 TITLE CRYSTAL STRUCTURE OF ADENYLATE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE ISOENZYME 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AK 1,ATP-AMP TRANSPHOSPHORYLASE 1,ATP:AMP COMPND 5 PHOSPHOTRANSFERASE,ADENYLATE MONOPHOSPHATE KINASE,MYOKINASE; COMPND 6 EC: 2.7.4.3,2.7.4.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: AK1, AK1, ZGC:91930; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MOON,E.BAE,J.KIM REVDAT 3 22-NOV-23 5XZ2 1 REMARK REVDAT 2 30-JAN-19 5XZ2 1 JRNL REVDAT 1 18-JUL-18 5XZ2 0 JRNL AUTH S.MOON,J.KIM,E.BAE JRNL TITL STRUCTURAL ANALYSES OF ADENYLATE KINASES FROM ANTARCTIC AND JRNL TITL 2 TROPICAL FISHES FOR UNDERSTANDING COLD ADAPTATION OF ENZYMES JRNL REF SCI REP V. 7 16027 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29167503 JRNL DOI 10.1038/S41598-017-16266-9 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 39358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2065 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2902 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2972 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.98000 REMARK 3 B22 (A**2) : -3.49000 REMARK 3 B33 (A**2) : -0.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.88000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.907 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3140 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3078 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4238 ; 2.120 ; 2.047 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7128 ; 0.895 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 382 ; 5.733 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;33.969 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 600 ;13.116 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;11.760 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 472 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3372 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 614 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1534 ; 2.310 ; 2.193 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1533 ; 2.305 ; 2.192 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1914 ; 3.162 ; 3.278 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1915 ; 3.162 ; 3.278 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1605 ; 3.632 ; 2.639 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1598 ; 3.625 ; 2.631 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2312 ; 5.596 ; 3.767 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3575 ; 7.106 ;18.088 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3554 ; 7.115 ;18.006 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0615 -35.8315 31.4133 REMARK 3 T TENSOR REMARK 3 T11: 0.0112 T22: 0.0993 REMARK 3 T33: 0.0949 T12: 0.0024 REMARK 3 T13: -0.0286 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.3287 L22: 0.3108 REMARK 3 L33: 0.3375 L12: -0.0592 REMARK 3 L13: -0.2383 L23: -0.0402 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: -0.0270 S13: 0.0021 REMARK 3 S21: -0.0380 S22: -0.0215 S23: 0.0405 REMARK 3 S31: 0.0055 S32: 0.0283 S33: 0.0263 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 193 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8373 -23.9060 10.4415 REMARK 3 T TENSOR REMARK 3 T11: 0.1060 T22: 0.0660 REMARK 3 T33: 0.0075 T12: -0.0094 REMARK 3 T13: -0.0052 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.1945 L22: 0.4261 REMARK 3 L33: 0.4291 L12: 0.1753 REMARK 3 L13: -0.0353 L23: -0.0423 REMARK 3 S TENSOR REMARK 3 S11: 0.0507 S12: -0.0678 S13: -0.0228 REMARK 3 S21: -0.0942 S22: -0.0423 S23: -0.0177 REMARK 3 S31: -0.0354 S32: 0.0193 S33: -0.0084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41960 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.75600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5X6K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 4.6, 2.5M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.28500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.22550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.28500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.22550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 194 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LYS B 194 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 303 O HOH A 303 2656 1.23 REMARK 500 NE2 GLN A 56 NE2 GLN A 56 2656 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 109 -74.47 -128.34 REMARK 500 SER A 136 67.69 61.66 REMARK 500 ASP B 3 -60.00 -106.60 REMARK 500 ILE B 109 -82.82 -130.92 REMARK 500 ASP B 141 49.77 -87.97 REMARK 500 ASN B 174 98.83 -69.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AP5 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AP5 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE REMAINED EXTRA RESIDUES (GLY AND HIS) AFTER TEV CLEAVAGE REMARK 999 REACTION. DBREF 5XZ2 A 1 194 UNP Q68EH2 Q68EH2_DANRE 1 194 DBREF 5XZ2 B 1 194 UNP Q68EH2 Q68EH2_DANRE 1 194 SEQADV 5XZ2 GLY A -1 UNP Q68EH2 SEE SEQUENCE DETAILS SEQADV 5XZ2 HIS A 0 UNP Q68EH2 SEE SEQUENCE DETAILS SEQADV 5XZ2 GLY B -1 UNP Q68EH2 SEE SEQUENCE DETAILS SEQADV 5XZ2 HIS B 0 UNP Q68EH2 SEE SEQUENCE DETAILS SEQRES 1 A 196 GLY HIS MET ALA ASP LYS ILE LYS ASN ALA LYS ILE VAL SEQRES 2 A 196 PHE VAL VAL GLY GLY PRO GLY SER GLY LYS GLY THR GLN SEQRES 3 A 196 CYS GLU LYS ILE VAL ALA LYS TYR GLY TYR THR HIS LEU SEQRES 4 A 196 SER SER GLY ASP LEU LEU ARG ALA GLU VAL ALA SER GLY SEQRES 5 A 196 SER GLU ARG GLY LYS GLN LEU GLN ALA ILE MET GLN LYS SEQRES 6 A 196 GLY GLU LEU VAL PRO LEU ASP THR VAL LEU ASP MET ILE SEQRES 7 A 196 LYS ASP ALA MET ILE ALA LYS ALA ASP VAL SER LYS GLY SEQRES 8 A 196 TYR LEU ILE ASP GLY TYR PRO ARG GLU VAL LYS GLN GLY SEQRES 9 A 196 GLU GLU PHE GLU LYS LYS ILE GLY ALA PRO ALA LEU LEU SEQRES 10 A 196 LEU TYR ILE ASP ALA LYS GLY GLU THR MET VAL LYS ARG SEQRES 11 A 196 LEU MET LYS ARG GLY GLU THR SER GLY ARG ALA ASP ASP SEQRES 12 A 196 ASN GLU GLU THR ILE LYS LYS ARG LEU ASP LEU TYR TYR SEQRES 13 A 196 LYS ALA THR GLU PRO VAL ILE ALA PHE TYR GLU GLN ARG SEQRES 14 A 196 GLY ILE VAL ARG LYS ILE ASN SER GLU LEU PRO VAL ASP SEQRES 15 A 196 GLU VAL PHE ALA ILE VAL GLU LYS ALA ILE ASP GLU LEU SEQRES 16 A 196 LYS SEQRES 1 B 196 GLY HIS MET ALA ASP LYS ILE LYS ASN ALA LYS ILE VAL SEQRES 2 B 196 PHE VAL VAL GLY GLY PRO GLY SER GLY LYS GLY THR GLN SEQRES 3 B 196 CYS GLU LYS ILE VAL ALA LYS TYR GLY TYR THR HIS LEU SEQRES 4 B 196 SER SER GLY ASP LEU LEU ARG ALA GLU VAL ALA SER GLY SEQRES 5 B 196 SER GLU ARG GLY LYS GLN LEU GLN ALA ILE MET GLN LYS SEQRES 6 B 196 GLY GLU LEU VAL PRO LEU ASP THR VAL LEU ASP MET ILE SEQRES 7 B 196 LYS ASP ALA MET ILE ALA LYS ALA ASP VAL SER LYS GLY SEQRES 8 B 196 TYR LEU ILE ASP GLY TYR PRO ARG GLU VAL LYS GLN GLY SEQRES 9 B 196 GLU GLU PHE GLU LYS LYS ILE GLY ALA PRO ALA LEU LEU SEQRES 10 B 196 LEU TYR ILE ASP ALA LYS GLY GLU THR MET VAL LYS ARG SEQRES 11 B 196 LEU MET LYS ARG GLY GLU THR SER GLY ARG ALA ASP ASP SEQRES 12 B 196 ASN GLU GLU THR ILE LYS LYS ARG LEU ASP LEU TYR TYR SEQRES 13 B 196 LYS ALA THR GLU PRO VAL ILE ALA PHE TYR GLU GLN ARG SEQRES 14 B 196 GLY ILE VAL ARG LYS ILE ASN SER GLU LEU PRO VAL ASP SEQRES 15 B 196 GLU VAL PHE ALA ILE VAL GLU LYS ALA ILE ASP GLU LEU SEQRES 16 B 196 LYS HET AP5 A 201 57 HET SO4 A 202 5 HET AP5 B 201 57 HET SO4 B 202 5 HETNAM AP5 BIS(ADENOSINE)-5'-PENTAPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 3 AP5 2(C20 H29 N10 O22 P5) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *108(H2 O) HELIX 1 AA1 ALA A 2 ALA A 8 1 7 HELIX 2 AA2 GLY A 20 GLY A 33 1 14 HELIX 3 AA3 SER A 39 SER A 49 1 11 HELIX 4 AA4 SER A 51 LYS A 63 1 13 HELIX 5 AA5 PRO A 68 LYS A 83 1 16 HELIX 6 AA6 ALA A 84 SER A 87 5 4 HELIX 7 AA7 GLU A 98 ILE A 109 1 12 HELIX 8 AA8 LYS A 121 THR A 135 1 15 HELIX 9 AA9 ARG A 138 ASP A 141 5 4 HELIX 10 AB1 ASN A 142 THR A 157 1 16 HELIX 11 AB2 THR A 157 GLN A 166 1 10 HELIX 12 AB3 PRO A 178 GLU A 192 1 15 HELIX 13 AB4 GLY B 20 GLY B 33 1 14 HELIX 14 AB5 SER B 39 SER B 49 1 11 HELIX 15 AB6 SER B 51 LYS B 63 1 13 HELIX 16 AB7 PRO B 68 ALA B 84 1 17 HELIX 17 AB8 GLU B 98 ILE B 109 1 12 HELIX 18 AB9 LYS B 121 GLY B 137 1 17 HELIX 19 AC1 ASN B 142 THR B 157 1 16 HELIX 20 AC2 THR B 157 GLN B 166 1 10 HELIX 21 AC3 PRO B 178 GLU B 192 1 15 SHEET 1 AA1 5 THR A 35 SER A 38 0 SHEET 2 AA1 5 TYR A 90 ASP A 93 1 O LEU A 91 N THR A 35 SHEET 3 AA1 5 ILE A 10 GLY A 15 1 N VAL A 11 O ILE A 92 SHEET 4 AA1 5 LEU A 114 ASP A 119 1 O ILE A 118 N VAL A 14 SHEET 5 AA1 5 VAL A 170 ASN A 174 1 O ILE A 173 N TYR A 117 SHEET 1 AA2 5 THR B 35 SER B 38 0 SHEET 2 AA2 5 TYR B 90 ASP B 93 1 O LEU B 91 N THR B 35 SHEET 3 AA2 5 ILE B 10 GLY B 15 1 N VAL B 11 O ILE B 92 SHEET 4 AA2 5 LEU B 114 ASP B 119 1 O ILE B 118 N VAL B 14 SHEET 5 AA2 5 VAL B 170 ASN B 174 1 O ILE B 173 N TYR B 117 CISPEP 1 TYR A 95 PRO A 96 0 17.44 CISPEP 2 TYR B 95 PRO B 96 0 14.11 SITE 1 AC1 35 GLY A 16 PRO A 17 GLY A 18 SER A 19 SITE 2 AC1 35 GLY A 20 LYS A 21 GLY A 22 THR A 23 SITE 3 AC1 35 SER A 39 GLY A 40 LEU A 43 ARG A 44 SITE 4 AC1 35 MET A 61 GLU A 65 VAL A 67 GLY A 94 SITE 5 AC1 35 TYR A 95 ARG A 97 GLN A 101 ARG A 128 SITE 6 AC1 35 ARG A 132 ARG A 138 ARG A 149 LEU A 177 SITE 7 AC1 35 VAL A 179 SO4 A 202 HOH A 315 HOH A 317 SITE 8 AC1 35 HOH A 320 HOH A 325 HOH A 338 HOH A 343 SITE 9 AC1 35 HOH A 344 HOH A 346 HOH A 352 SITE 1 AC2 3 ARG A 128 AP5 A 201 HOH A 352 SITE 1 AC3 33 GLY B 16 PRO B 17 GLY B 18 SER B 19 SITE 2 AC3 33 GLY B 20 LYS B 21 GLY B 22 THR B 23 SITE 3 AC3 33 SER B 39 GLY B 40 LEU B 43 ARG B 44 SITE 4 AC3 33 MET B 61 GLU B 65 LEU B 66 VAL B 67 SITE 5 AC3 33 GLY B 94 TYR B 95 ARG B 97 GLN B 101 SITE 6 AC3 33 ARG B 128 ARG B 132 ARG B 138 ARG B 149 SITE 7 AC3 33 LEU B 177 VAL B 179 SO4 B 202 HOH B 302 SITE 8 AC3 33 HOH B 304 HOH B 308 HOH B 309 HOH B 311 SITE 9 AC3 33 HOH B 314 SITE 1 AC4 3 ARG B 128 AP5 B 201 HOH B 308 CRYST1 100.570 52.451 89.313 90.00 118.46 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009943 0.000000 0.005389 0.00000 SCALE2 0.000000 0.019065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012735 0.00000