HEADER SUGAR BINDING PROTEIN 12-JUL-17 5XZK TITLE PHOLIOTA SQUARROSA LECTIN TRIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN (PHOSL); COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: PHOLIOTA SQUARROSA; SOURCE 4 ORGANISM_TAXID: 75321 KEYWDS LECTIN, TRIMER, FUCOSE, SUGAR BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.YAMASAKI REVDAT 2 01-MAY-24 5XZK 1 REMARK REVDAT 1 06-JUN-18 5XZK 0 JRNL AUTH K.YAMASAKI,T.YAMASAKI,H.TATENO JRNL TITL THE TRIMERIC SOLUTION STRUCTURE AND FUCOSE-BINDING MECHANISM JRNL TITL 2 OF THE CORE FUCOSYLATION-SPECIFIC LECTIN PHOSL. JRNL REF SCI REP V. 8 7740 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29773815 JRNL DOI 10.1038/S41598-018-25630-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NONCRYSTALLOGRAPHIC SYMMETRY WAS REMARK 3 APPLIED REMARK 4 REMARK 4 5XZK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004427. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.3 MM NO PHOLIOTA SQUARROSA REMARK 210 LECTIN (PHOSL), 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 2D DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2007 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 7 ASP A 25 -45.33 -136.13 REMARK 500 7 ASP B 25 -45.36 -136.20 REMARK 500 7 ASP C 25 -45.31 -136.15 REMARK 500 14 ASP A 25 18.29 -143.59 REMARK 500 14 PHE A 37 147.87 -176.13 REMARK 500 14 ASP B 25 18.29 -143.66 REMARK 500 14 PHE B 37 147.85 -176.20 REMARK 500 14 ASP C 25 18.31 -143.60 REMARK 500 14 PHE C 37 147.83 -176.22 REMARK 500 15 TYR A 23 -70.78 -55.36 REMARK 500 15 TYR B 23 -70.79 -55.33 REMARK 500 15 TYR C 23 -70.72 -55.46 REMARK 500 18 THR A 6 -63.36 -97.06 REMARK 500 18 THR B 6 -63.37 -97.11 REMARK 500 18 THR C 6 -63.36 -97.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36103 RELATED DB: BMRB REMARK 900 PHOLIOTA SQUARROSA LECTIN TRIMER DBREF 5XZK A 1 40 PDB 5XZK 5XZK 1 40 DBREF 5XZK B 1 40 PDB 5XZK 5XZK 1 40 DBREF 5XZK C 1 40 PDB 5XZK 5XZK 1 40 SEQRES 1 A 40 ALA PRO VAL PRO VAL THR LYS LEU VAL CYS ASP GLY ASP SEQRES 2 A 40 THR TYR LYS CYS THR ALA TYR LEU ASP TYR GLY ASP GLY SEQRES 3 A 40 LYS TRP VAL ALA GLN TRP ASP THR ALA VAL PHE HIS THR SEQRES 4 A 40 THR SEQRES 1 B 40 ALA PRO VAL PRO VAL THR LYS LEU VAL CYS ASP GLY ASP SEQRES 2 B 40 THR TYR LYS CYS THR ALA TYR LEU ASP TYR GLY ASP GLY SEQRES 3 B 40 LYS TRP VAL ALA GLN TRP ASP THR ALA VAL PHE HIS THR SEQRES 4 B 40 THR SEQRES 1 C 40 ALA PRO VAL PRO VAL THR LYS LEU VAL CYS ASP GLY ASP SEQRES 2 C 40 THR TYR LYS CYS THR ALA TYR LEU ASP TYR GLY ASP GLY SEQRES 3 C 40 LYS TRP VAL ALA GLN TRP ASP THR ALA VAL PHE HIS THR SEQRES 4 C 40 THR SHEET 1 AA1 8 ALA C 35 HIS C 38 0 SHEET 2 AA1 8 TRP B 28 ASP B 33 -1 N GLN B 31 O ALA C 35 SHEET 3 AA1 8 LYS B 16 LEU B 21 -1 N LEU B 21 O TRP B 28 SHEET 4 AA1 8 VAL B 3 CYS B 10 -1 N LYS B 7 O TYR B 20 SHEET 5 AA1 8 VAL A 3 CYS A 10 -1 N VAL A 5 O LEU B 8 SHEET 6 AA1 8 LYS A 16 LEU A 21 -1 O TYR A 20 N LYS A 7 SHEET 7 AA1 8 TRP A 28 ASP A 33 -1 O TRP A 28 N LEU A 21 SHEET 8 AA1 8 ALA B 35 HIS B 38 -1 O ALA B 35 N GLN A 31 SHEET 1 AA2 8 ALA C 35 HIS C 38 0 SHEET 2 AA2 8 TRP B 28 ASP B 33 -1 N GLN B 31 O ALA C 35 SHEET 3 AA2 8 LYS B 16 LEU B 21 -1 N LEU B 21 O TRP B 28 SHEET 4 AA2 8 VAL B 3 CYS B 10 -1 N LYS B 7 O TYR B 20 SHEET 5 AA2 8 VAL C 3 CYS C 10 -1 O LEU C 8 N VAL B 5 SHEET 6 AA2 8 LYS C 16 LEU C 21 -1 O TYR C 20 N LYS C 7 SHEET 7 AA2 8 TRP C 28 ASP C 33 -1 O TRP C 28 N LEU C 21 SHEET 8 AA2 8 ALA A 35 HIS A 38 -1 N ALA A 35 O GLN C 31 SHEET 1 AA3 8 ALA B 35 HIS B 38 0 SHEET 2 AA3 8 TRP A 28 ASP A 33 -1 N GLN A 31 O ALA B 35 SHEET 3 AA3 8 LYS A 16 LEU A 21 -1 N LEU A 21 O TRP A 28 SHEET 4 AA3 8 VAL A 3 CYS A 10 -1 N LYS A 7 O TYR A 20 SHEET 5 AA3 8 VAL C 3 CYS C 10 -1 O VAL C 5 N LEU A 8 SHEET 6 AA3 8 LYS C 16 LEU C 21 -1 O TYR C 20 N LYS C 7 SHEET 7 AA3 8 TRP C 28 ASP C 33 -1 O TRP C 28 N LEU C 21 SHEET 8 AA3 8 ALA A 35 HIS A 38 -1 N ALA A 35 O GLN C 31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1