HEADER BIOSYNTHETIC PROTEIN 15-JUL-17 5Y08 TITLE SOLUTION STRUCTURE OF THE APO DOUBLET ACYL CARRIER PROTEIN FROM TITLE 2 PRODIGIOSIN BIOSYNTHESIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXY-2,2'-BIPYRROLE-5-METHANOL SYNTHASE PIGH; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-188; COMPND 5 SYNONYM: HBM SYNTHASE,AMINOTRANSFERASE PIGH; COMPND 6 EC: 2.3.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA SP. ATCC 39006; SOURCE 3 ORGANISM_TAXID: 104623; SOURCE 4 STRAIN: ATCC 39006; SOURCE 5 GENE: PIGH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS ACYL CARRIER PROTEIN, BIOSYNTHETIC PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.WATTANA-AMORN REVDAT 5 15-MAY-24 5Y08 1 REMARK REVDAT 4 14-JUN-23 5Y08 1 REMARK REVDAT 3 27-JAN-21 5Y08 1 JRNL REVDAT 2 27-MAR-19 5Y08 1 REMARK REVDAT 1 12-DEC-18 5Y08 0 JRNL AUTH T.THONGKAWPHUEAK,A.J.WINTER,C.WILLIAMS,H.J.MAPLE, JRNL AUTH 2 S.SOONTARANON,C.KAEWHAN,D.J.CAMPOPIANO,M.P.CRUMP, JRNL AUTH 3 P.WATTANA-AMORN JRNL TITL SOLUTION STRUCTURE AND CONFORMATIONAL DYNAMICS OF A DOUBLET JRNL TITL 2 ACYL CARRIER PROTEIN FROM PRODIGIOSIN BIOSYNTHESIS. JRNL REF BIOCHEMISTRY 2021 JRNL REFN ISSN 0006-2960 JRNL PMID 33416314 JRNL DOI 10.1021/ACS.BIOCHEM.0C00830 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y08 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004248. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.1 MM NAN3 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20 MM NONE TRIS, 5 MM NONE DTT, REMARK 210 0.1 MM NONE SODIUM AZIDE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HNCO; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 3D REMARK 210 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA, ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REFINEMENT IN EXPLICIT WATER USING RECOORD PROTOCOL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 104 HG CYS A 205 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 2 PHE A 190 CE1 PHE A 190 CZ 0.121 REMARK 500 3 TYR A 12 CZ TYR A 12 CE2 -0.085 REMARK 500 16 PHE A 62 CZ PHE A 62 CE2 0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 36.92 -142.16 REMARK 500 1 MET A 4 64.02 60.41 REMARK 500 1 ASP A 6 -45.71 -147.60 REMARK 500 1 ARG A 86 -71.48 -113.35 REMARK 500 1 ALA A 100 76.05 56.99 REMARK 500 1 ASN A 166 109.14 -59.26 REMARK 500 1 ARG A 194 -74.76 -87.48 REMARK 500 1 PRO A 200 79.12 -68.00 REMARK 500 1 LEU A 201 38.59 -142.28 REMARK 500 2 ASP A 6 87.78 70.20 REMARK 500 2 GLU A 87 134.63 -174.48 REMARK 500 2 LYS A 93 71.68 56.00 REMARK 500 2 ALA A 165 -155.27 -83.03 REMARK 500 2 ARG A 194 -156.93 -125.56 REMARK 500 3 ASP A 6 -62.30 -153.13 REMARK 500 3 GLU A 87 126.72 65.44 REMARK 500 3 ASN A 166 109.96 -51.64 REMARK 500 3 ARG A 194 -158.18 -136.09 REMARK 500 4 ARG A 86 -62.63 -108.66 REMARK 500 4 GLU A 95 87.00 67.29 REMARK 500 4 ASN A 166 77.23 65.10 REMARK 500 4 ARG A 194 -94.19 -105.34 REMARK 500 5 MET A 4 61.73 60.05 REMARK 500 5 ARG A 86 -68.31 -105.82 REMARK 500 5 GLU A 87 136.33 -171.50 REMARK 500 5 LEU A 101 130.34 73.34 REMARK 500 5 SER A 203 32.79 -97.95 REMARK 500 6 ASN A 166 78.74 66.14 REMARK 500 6 CYS A 167 78.22 -108.54 REMARK 500 6 ARG A 194 -111.64 -114.47 REMARK 500 7 GLU A 87 83.68 63.86 REMARK 500 7 SER A 91 48.04 -76.02 REMARK 500 7 PRO A 96 -153.69 -82.70 REMARK 500 7 ASN A 166 81.40 -67.95 REMARK 500 7 ARG A 194 -168.14 -115.79 REMARK 500 7 PRO A 198 109.90 -58.73 REMARK 500 7 SER A 203 61.81 60.35 REMARK 500 8 ARG A 86 -73.33 -91.40 REMARK 500 8 SER A 91 40.29 70.54 REMARK 500 8 GLN A 157 34.29 70.23 REMARK 500 8 ARG A 194 -58.21 67.26 REMARK 500 8 LEU A 201 90.51 61.06 REMARK 500 8 ARG A 202 83.12 66.16 REMARK 500 9 ARG A 86 -64.40 -105.04 REMARK 500 9 PRO A 96 -145.63 -79.30 REMARK 500 9 ALA A 100 67.45 65.92 REMARK 500 9 ASN A 166 106.59 -32.29 REMARK 500 9 ARG A 194 -107.58 -119.02 REMARK 500 9 PRO A 200 88.23 -62.98 REMARK 500 10 ASP A 6 46.68 -89.98 REMARK 500 REMARK 500 THIS ENTRY HAS 104 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 7 TYR A 12 0.08 SIDE CHAIN REMARK 500 9 TYR A 12 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36104 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE APO DOUBLET ACYL CARRIER PROTEIN FROM REMARK 900 PRODIGIOSIN BIOSYNTHESIS REMARK 900 RELATED ID: SASDDH6 RELATED DB: SASBDB DBREF 5Y08 A 4 191 UNP Q5W264 PIGH_SERS3 1 188 SEQADV 5Y08 GLY A 1 UNP Q5W264 EXPRESSION TAG SEQADV 5Y08 SER A 2 UNP Q5W264 EXPRESSION TAG SEQADV 5Y08 HIS A 3 UNP Q5W264 EXPRESSION TAG SEQADV 5Y08 LEU A 192 UNP Q5W264 EXPRESSION TAG SEQADV 5Y08 THR A 193 UNP Q5W264 EXPRESSION TAG SEQADV 5Y08 ARG A 194 UNP Q5W264 EXPRESSION TAG SEQADV 5Y08 ALA A 195 UNP Q5W264 EXPRESSION TAG SEQADV 5Y08 PRO A 196 UNP Q5W264 EXPRESSION TAG SEQADV 5Y08 PRO A 197 UNP Q5W264 EXPRESSION TAG SEQADV 5Y08 PRO A 198 UNP Q5W264 EXPRESSION TAG SEQADV 5Y08 PRO A 199 UNP Q5W264 EXPRESSION TAG SEQADV 5Y08 PRO A 200 UNP Q5W264 EXPRESSION TAG SEQADV 5Y08 LEU A 201 UNP Q5W264 EXPRESSION TAG SEQADV 5Y08 ARG A 202 UNP Q5W264 EXPRESSION TAG SEQADV 5Y08 SER A 203 UNP Q5W264 EXPRESSION TAG SEQADV 5Y08 GLY A 204 UNP Q5W264 EXPRESSION TAG SEQADV 5Y08 CYS A 205 UNP Q5W264 EXPRESSION TAG SEQRES 1 A 205 GLY SER HIS MET ASN ASP VAL THR THR GLU THR TYR GLU SEQRES 2 A 205 THR LEU LYS GLN SER VAL LEU HIS THR PHE ALA GLN LEU SEQRES 3 A 205 THR GLY TYR ASN VAL SER GLU LEU SER LEU THR SER HIS SEQRES 4 A 205 LEU GLU ASN ASP LEU GLY VAL ASP SER ILE ALA LEU ALA SEQRES 5 A 205 GLU ILE ALA VAL SER LEU SER ARG GLN PHE GLN LEU ASN SEQRES 6 A 205 THR PRO LEU LEU ILE GLN ASP ILE ASN THR ILE LYS ASP SEQRES 7 A 205 ALA LEU ASP GLY ILE LEU GLN ARG GLU PHE GLN LEU SER SEQRES 8 A 205 GLU LYS VAL GLU PRO ALA ALA ILE ALA LEU SER GLY ASP SEQRES 9 A 205 ALA ASP LEU TRP LEU GLY ASN LEU VAL ARG GLN ILE PHE SEQRES 10 A 205 ALA SER HIS SER GLY TYR ASP VAL ASN ALA LEU ALA LEU SEQRES 11 A 205 ASP ALA GLU ILE GLU SER ASP LEU GLY ILE ASP SER VAL SEQRES 12 A 205 SER VAL ALA SER ALA GLN GLY GLU LEU PHE ASN THR LEU SEQRES 13 A 205 GLN LEU ASN SER GLU THR ILE ILE ALA ASN CYS ASN THR SEQRES 14 A 205 LEU SER ALA LEU LYS GLN CYS LEU ALA ALA ARG LEU VAL SEQRES 15 A 205 GLN GLU LYS GLY GLN ASP TRP PHE GLU LEU THR ARG ALA SEQRES 16 A 205 PRO PRO PRO PRO PRO LEU ARG SER GLY CYS HELIX 1 AA1 THR A 8 GLY A 28 1 21 HELIX 2 AA2 ASN A 30 LEU A 34 5 5 HELIX 3 AA3 ASP A 47 PHE A 62 1 16 HELIX 4 AA4 THR A 75 LEU A 84 1 10 HELIX 5 AA5 SER A 102 GLY A 122 1 21 HELIX 6 AA6 ASP A 141 LEU A 156 1 16 HELIX 7 AA7 THR A 169 LYS A 185 1 17 HELIX 8 AA8 GLN A 187 ALA A 195 1 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1