HEADER LIGASE 18-JUL-17 5Y0P TITLE CRYSTAL STRUCTURE OF BACILLUS SUBTILIS TMCAL BOUND WITH ALPHA-THIO ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0348 PROTEIN B4417_3650; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE GENE WAS CLONED INTO PET15B WITH NDEI AND XHOI COMPND 6 SITE, AND EXPRESSED AS A N-TERMINALLY HIS-TAGGED PROTEIN. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: B4417_3650; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACETATE LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.YAMASHITA,K.TOMITA REVDAT 3 22-NOV-23 5Y0P 1 REMARK REVDAT 2 26-DEC-18 5Y0P 1 HEADER KEYWDS JRNL REVDAT 1 18-JUL-18 5Y0P 0 JRNL AUTH T.TANIGUCHI,K.MIYAUCHI,Y.SAKAGUCHI,S.YAMASHITA,A.SOMA, JRNL AUTH 2 K.TOMITA,T.SUZUKI JRNL TITL ACETATE-DEPENDENT TRNA ACETYLATION REQUIRED FOR DECODING JRNL TITL 2 FIDELITY IN PROTEIN SYNTHESIS. JRNL REF NAT. CHEM. BIOL. V. 14 1010 2018 JRNL REFN ESSN 1552-4469 JRNL PMID 30150682 JRNL DOI 10.1038/S41589-018-0119-Z REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9153 - 5.7917 0.95 2851 151 0.1432 0.1774 REMARK 3 2 5.7917 - 4.5981 0.95 2698 142 0.1463 0.1580 REMARK 3 3 4.5981 - 4.0172 0.95 2661 140 0.1440 0.1715 REMARK 3 4 4.0172 - 3.6501 0.95 2698 142 0.1837 0.1939 REMARK 3 5 3.6501 - 3.3885 0.95 2624 138 0.2072 0.2326 REMARK 3 6 3.3885 - 3.1888 0.95 2641 139 0.2318 0.2577 REMARK 3 7 3.1888 - 3.0291 0.95 2630 138 0.2512 0.2789 REMARK 3 8 3.0291 - 2.8973 0.95 2626 138 0.2650 0.2703 REMARK 3 9 2.8973 - 2.7857 0.95 2636 139 0.2954 0.3287 REMARK 3 10 2.7857 - 2.6896 0.95 2586 136 0.2801 0.2985 REMARK 3 11 2.6896 - 2.6055 0.95 2601 137 0.3009 0.3308 REMARK 3 12 2.6055 - 2.5310 0.95 2568 135 0.3145 0.4409 REMARK 3 13 2.5310 - 2.4644 0.95 2642 139 0.3349 0.4143 REMARK 3 14 2.4644 - 2.4043 0.95 2602 137 0.3513 0.3398 REMARK 3 15 2.4043 - 2.3496 0.95 2558 135 0.3493 0.3743 REMARK 3 16 2.3496 - 2.2996 0.94 2597 137 0.3833 0.4707 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.5000 REMARK 3 OPERATOR: -K,-H,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6614 REMARK 3 ANGLE : 1.252 8950 REMARK 3 CHIRALITY : 0.045 992 REMARK 3 PLANARITY : 0.006 1124 REMARK 3 DIHEDRAL : 16.873 2480 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:105) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9239 -7.6796 -56.8786 REMARK 3 T TENSOR REMARK 3 T11: 0.9711 T22: 0.7436 REMARK 3 T33: 0.2132 T12: 0.2983 REMARK 3 T13: 0.0388 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.9709 L22: 0.8834 REMARK 3 L33: 0.6369 L12: -0.2472 REMARK 3 L13: 0.8237 L23: -0.0071 REMARK 3 S TENSOR REMARK 3 S11: 0.1243 S12: 0.2702 S13: -0.0762 REMARK 3 S21: -0.4486 S22: -0.0535 S23: -0.0766 REMARK 3 S31: -1.0859 S32: -0.6084 S33: 0.0443 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 106:153) REMARK 3 ORIGIN FOR THE GROUP (A): 45.6862 -2.7919 -63.2899 REMARK 3 T TENSOR REMARK 3 T11: 1.2415 T22: 0.6364 REMARK 3 T33: 0.4024 T12: 0.0299 REMARK 3 T13: -0.0481 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 7.4277 L22: 3.8804 REMARK 3 L33: 8.2353 L12: 2.0989 REMARK 3 L13: 4.6112 L23: 3.6955 REMARK 3 S TENSOR REMARK 3 S11: 0.4737 S12: 0.9548 S13: -0.6474 REMARK 3 S21: -0.2369 S22: 0.3610 S23: -0.6388 REMARK 3 S31: 2.2600 S32: 0.6013 S33: -0.7854 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 154:414) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5908 -5.8910 -45.2822 REMARK 3 T TENSOR REMARK 3 T11: 0.7056 T22: 0.5575 REMARK 3 T33: 0.2893 T12: 0.1448 REMARK 3 T13: 0.0603 T23: 0.0521 REMARK 3 L TENSOR REMARK 3 L11: 1.0886 L22: 1.1372 REMARK 3 L33: 5.0175 L12: -0.0021 REMARK 3 L13: 0.4275 L23: 0.9247 REMARK 3 S TENSOR REMARK 3 S11: 0.0345 S12: 0.0076 S13: 0.0623 REMARK 3 S21: -0.3844 S22: 0.0156 S23: 0.0738 REMARK 3 S31: -1.2142 S32: -0.5385 S33: -0.0199 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 1:105) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4411 -1.0803 4.0080 REMARK 3 T TENSOR REMARK 3 T11: 0.6401 T22: 0.8424 REMARK 3 T33: 0.2783 T12: 0.2189 REMARK 3 T13: 0.0003 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.5907 L22: 1.1413 REMARK 3 L33: 3.1423 L12: -0.5284 REMARK 3 L13: -1.0751 L23: -0.1259 REMARK 3 S TENSOR REMARK 3 S11: -0.1920 S12: -0.4972 S13: 0.0237 REMARK 3 S21: 0.3696 S22: 0.0903 S23: 0.1091 REMARK 3 S31: -0.7808 S32: -1.1222 S33: 0.1003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 106:153) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6344 -29.3015 10.5602 REMARK 3 T TENSOR REMARK 3 T11: 0.6525 T22: 0.8239 REMARK 3 T33: 0.4983 T12: 0.2244 REMARK 3 T13: -0.0359 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 3.9771 L22: 4.1018 REMARK 3 L33: 7.6054 L12: 3.8573 REMARK 3 L13: 3.5438 L23: 4.6816 REMARK 3 S TENSOR REMARK 3 S11: 0.5233 S12: -0.0065 S13: -0.6550 REMARK 3 S21: 0.6384 S22: 0.2070 S23: -0.5676 REMARK 3 S31: 0.7231 S32: 1.1069 S33: -0.6812 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 154:414) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6258 -3.9900 -7.4251 REMARK 3 T TENSOR REMARK 3 T11: 0.4746 T22: 0.6780 REMARK 3 T33: 0.2629 T12: 0.0819 REMARK 3 T13: 0.0244 T23: 0.0653 REMARK 3 L TENSOR REMARK 3 L11: 1.3483 L22: 1.5472 REMARK 3 L33: 3.6083 L12: 0.0219 REMARK 3 L13: 0.1424 L23: 0.5070 REMARK 3 S TENSOR REMARK 3 S11: 0.0413 S12: -0.1987 S13: 0.0387 REMARK 3 S21: 0.0235 S22: 0.0568 S23: 0.0932 REMARK 3 S31: -0.4558 S32: -0.8644 S33: -0.0750 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300002659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44459 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.83 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.42 REMARK 200 R MERGE FOR SHELL (I) : 1.88400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5Y0N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, PEG400, KCL, MGCL2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.99750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.58400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.99950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 105.58400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.99750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.99950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 SER A 189 REMARK 465 SER A 190 REMARK 465 ASP A 191 REMARK 465 TYR A 192 REMARK 465 HIS A 193 REMARK 465 ASP A 194 REMARK 465 ALA A 195 REMARK 465 ASP A 196 REMARK 465 LEU A 197 REMARK 465 PRO A 198 REMARK 465 GLU A 199 REMARK 465 GLY A 200 REMARK 465 GLU A 201 REMARK 465 VAL A 415 REMARK 465 MET B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 GLY B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 SER B 189 REMARK 465 SER B 190 REMARK 465 ASP B 191 REMARK 465 TYR B 192 REMARK 465 HIS B 193 REMARK 465 ASP B 194 REMARK 465 ALA B 195 REMARK 465 ASP B 196 REMARK 465 LEU B 197 REMARK 465 PRO B 198 REMARK 465 GLU B 199 REMARK 465 GLY B 200 REMARK 465 GLU B 201 REMARK 465 VAL B 415 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 60 O HOH B 1101 2.08 REMARK 500 O ASN B 11 NH1 ARG B 211 2.09 REMARK 500 O PRO B 109 OG1 THR B 113 2.12 REMARK 500 O ARG A 285 O HOH A 1101 2.13 REMARK 500 O HOH A 1120 O HOH A 1135 2.14 REMARK 500 NH2 ARG B 44 O1B TAT B 1001 2.16 REMARK 500 OE1 GLU B 397 O HOH B 1102 2.16 REMARK 500 OD2 ASP A 374 O HOH A 1102 2.16 REMARK 500 ND2 ASN B 15 O HIS B 203 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 71.94 44.12 REMARK 500 GLN A 217 -11.58 70.36 REMARK 500 GLN A 410 75.32 56.81 REMARK 500 HIS B 40 -53.40 -131.59 REMARK 500 LEU B 150 -9.35 64.92 REMARK 500 THR B 152 -176.69 -66.92 REMARK 500 ALA B 155 -119.78 55.46 REMARK 500 LEU B 156 72.13 51.06 REMARK 500 SER B 361 -73.05 -106.72 REMARK 500 TYR B 398 -70.80 -125.10 REMARK 500 GLN B 410 75.29 43.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 408 GLU A 409 -131.02 REMARK 500 GLU B 409 GLN B 410 149.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TAT A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TAT B 1001 DBREF1 5Y0P A 1 415 UNP A0A164SIT4_BACIU DBREF2 5Y0P A A0A164SIT4 1 415 DBREF1 5Y0P B 1 415 UNP A0A164SIT4_BACIU DBREF2 5Y0P B A0A164SIT4 1 415 SEQADV 5Y0P MET A -18 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P GLY A -17 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P SER A -16 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P SER A -15 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P HIS A -14 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P HIS A -13 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P HIS A -12 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P HIS A -11 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P HIS A -10 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P HIS A -9 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P SER A -8 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P SER A -7 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P GLY A -6 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P LEU A -5 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P VAL A -4 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P PRO A -3 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P ARG A -2 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P GLY A -1 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P SER A 0 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P MET B -18 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P GLY B -17 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P SER B -16 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P SER B -15 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P HIS B -14 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P HIS B -13 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P HIS B -12 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P HIS B -11 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P HIS B -10 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P HIS B -9 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P SER B -8 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P SER B -7 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P GLY B -6 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P LEU B -5 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P VAL B -4 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P PRO B -3 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P ARG B -2 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P GLY B -1 UNP A0A164SIT EXPRESSION TAG SEQADV 5Y0P SER B 0 UNP A0A164SIT EXPRESSION TAG SEQRES 1 A 434 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 434 LEU VAL PRO ARG GLY SER MET LYS ALA VAL GLY LEU VAL SEQRES 3 A 434 VAL GLU TYR ASN PRO PHE HIS ASN GLY HIS LEU TYR HIS SEQRES 4 A 434 ALA GLN THR ALA LYS LEU GLN THR GLY CYS ASP THR ALA SEQRES 5 A 434 VAL ALA VAL MET SER GLY HIS PHE LEU GLN ARG GLY GLU SEQRES 6 A 434 PRO ALA VAL VAL SER LYS TRP ALA ARG THR LYS MET ALA SEQRES 7 A 434 LEU GLN SER GLY VAL ASP LEU VAL ILE GLU LEU PRO TYR SEQRES 8 A 434 LEU TYR ALA VAL GLN LYS ALA ASP ILE PHE ALA ARG GLY SEQRES 9 A 434 SER VAL SER ILE LEU ASN GLU LEU GLU CYS GLU ALA LEU SEQRES 10 A 434 PHE PHE GLY SER GLU ASN GLY ASP ILE LYS PRO PHE LEU SEQRES 11 A 434 GLU THR ALA GLN LEU ILE ASP GLU HIS LYS HIS ILE LEU SEQRES 12 A 434 ASN ASP ARG ILE LYS GLU GLU LEU LYS LYS GLY ALA SER SEQRES 13 A 434 TYR PRO ALA ALA ALA ALA ILE ALA PHE SER SER ILE LEU SEQRES 14 A 434 HIS THR GLU SER ALA LEU ASP LEU SER LYS PRO ASN ASN SEQRES 15 A 434 ILE LEU GLY TYR GLN TYR VAL THR SER ILE LEU THR GLY SEQRES 16 A 434 GLY TYR PRO MET LYS PRO TYR THR THR ALA ARG ILE SER SEQRES 17 A 434 SER ASP TYR HIS ASP ALA ASP LEU PRO GLU GLY GLU ASN SEQRES 18 A 434 HIS ILE ALA SER ALA THR SER ILE ARG LYS ALA MET ILE SEQRES 19 A 434 GLY GLN ASN LEU GLU ALA CYS LEU ARG PHE LEU PRO ALA SEQRES 20 A 434 ALA SER ALA ARG GLU LEU ALA ALA TYR ARG LYS SER PHE SEQRES 21 A 434 GLY LEU TRP HIS THR PRO GLU SER TYR PHE SER TYR LEU SEQRES 22 A 434 LYS TYR SER LEU SER THR VAL THR ALA ARG GLU LEU GLN SEQRES 23 A 434 GLN VAL TYR GLU VAL GLU GLU GLY LEU GLU HIS ARG ILE SEQRES 24 A 434 ILE ARG SER ILE ARG LYS SER SER SER TYR GLN GLU PHE SEQRES 25 A 434 MET GLU LEU LEU LYS THR LYS ARG TYR THR TRP THR ARG SEQRES 26 A 434 LEU GLN ARG MET ASN THR HIS ILE LEU THR ARG THR LYS SEQRES 27 A 434 LYS GLN ASP MET GLN LYS LEU LEU ASP ASN ASP LYS ALA SEQRES 28 A 434 PRO TYR ILE ARG LEU LEU GLY MET THR LYS LYS GLY GLN SEQRES 29 A 434 ALA TYR LEU SER GLU LYS LYS LYS ALA LEU SER VAL PRO SEQRES 30 A 434 LEU VAL SER LYS LEU SER SER PHE SER HIS PRO ALA LEU SEQRES 31 A 434 ASP LEU ASP VAL LYS ALA SER ARG ILE TYR SER LEU PRO SEQRES 32 A 434 ILE GLU GLU PRO LEU ARG THR GLU PHE ASP LEU GLN GLU SEQRES 33 A 434 TYR GLY HIS ALA PRO ILE ARG TYR ASP GLU ASP GLU GLN SEQRES 34 A 434 HIS PHE LEU ASN VAL SEQRES 1 B 434 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 434 LEU VAL PRO ARG GLY SER MET LYS ALA VAL GLY LEU VAL SEQRES 3 B 434 VAL GLU TYR ASN PRO PHE HIS ASN GLY HIS LEU TYR HIS SEQRES 4 B 434 ALA GLN THR ALA LYS LEU GLN THR GLY CYS ASP THR ALA SEQRES 5 B 434 VAL ALA VAL MET SER GLY HIS PHE LEU GLN ARG GLY GLU SEQRES 6 B 434 PRO ALA VAL VAL SER LYS TRP ALA ARG THR LYS MET ALA SEQRES 7 B 434 LEU GLN SER GLY VAL ASP LEU VAL ILE GLU LEU PRO TYR SEQRES 8 B 434 LEU TYR ALA VAL GLN LYS ALA ASP ILE PHE ALA ARG GLY SEQRES 9 B 434 SER VAL SER ILE LEU ASN GLU LEU GLU CYS GLU ALA LEU SEQRES 10 B 434 PHE PHE GLY SER GLU ASN GLY ASP ILE LYS PRO PHE LEU SEQRES 11 B 434 GLU THR ALA GLN LEU ILE ASP GLU HIS LYS HIS ILE LEU SEQRES 12 B 434 ASN ASP ARG ILE LYS GLU GLU LEU LYS LYS GLY ALA SER SEQRES 13 B 434 TYR PRO ALA ALA ALA ALA ILE ALA PHE SER SER ILE LEU SEQRES 14 B 434 HIS THR GLU SER ALA LEU ASP LEU SER LYS PRO ASN ASN SEQRES 15 B 434 ILE LEU GLY TYR GLN TYR VAL THR SER ILE LEU THR GLY SEQRES 16 B 434 GLY TYR PRO MET LYS PRO TYR THR THR ALA ARG ILE SER SEQRES 17 B 434 SER ASP TYR HIS ASP ALA ASP LEU PRO GLU GLY GLU ASN SEQRES 18 B 434 HIS ILE ALA SER ALA THR SER ILE ARG LYS ALA MET ILE SEQRES 19 B 434 GLY GLN ASN LEU GLU ALA CYS LEU ARG PHE LEU PRO ALA SEQRES 20 B 434 ALA SER ALA ARG GLU LEU ALA ALA TYR ARG LYS SER PHE SEQRES 21 B 434 GLY LEU TRP HIS THR PRO GLU SER TYR PHE SER TYR LEU SEQRES 22 B 434 LYS TYR SER LEU SER THR VAL THR ALA ARG GLU LEU GLN SEQRES 23 B 434 GLN VAL TYR GLU VAL GLU GLU GLY LEU GLU HIS ARG ILE SEQRES 24 B 434 ILE ARG SER ILE ARG LYS SER SER SER TYR GLN GLU PHE SEQRES 25 B 434 MET GLU LEU LEU LYS THR LYS ARG TYR THR TRP THR ARG SEQRES 26 B 434 LEU GLN ARG MET ASN THR HIS ILE LEU THR ARG THR LYS SEQRES 27 B 434 LYS GLN ASP MET GLN LYS LEU LEU ASP ASN ASP LYS ALA SEQRES 28 B 434 PRO TYR ILE ARG LEU LEU GLY MET THR LYS LYS GLY GLN SEQRES 29 B 434 ALA TYR LEU SER GLU LYS LYS LYS ALA LEU SER VAL PRO SEQRES 30 B 434 LEU VAL SER LYS LEU SER SER PHE SER HIS PRO ALA LEU SEQRES 31 B 434 ASP LEU ASP VAL LYS ALA SER ARG ILE TYR SER LEU PRO SEQRES 32 B 434 ILE GLU GLU PRO LEU ARG THR GLU PHE ASP LEU GLN GLU SEQRES 33 B 434 TYR GLY HIS ALA PRO ILE ARG TYR ASP GLU ASP GLU GLN SEQRES 34 B 434 HIS PHE LEU ASN VAL HET TAT A1001 31 HET TAT B1001 31 HETNAM TAT ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE FORMUL 3 TAT 2(C10 H16 N5 O12 P3 S) FORMUL 5 HOH *67(H2 O) HELIX 1 AA1 HIS A 14 GLY A 29 1 16 HELIX 2 AA2 SER A 51 GLN A 61 1 11 HELIX 3 AA3 PRO A 71 VAL A 76 1 6 HELIX 4 AA4 LYS A 78 LEU A 93 1 16 HELIX 5 AA5 ILE A 107 LYS A 134 1 28 HELIX 6 AA6 SER A 137 HIS A 151 1 15 HELIX 7 AA7 LYS A 160 GLY A 177 1 18 HELIX 8 AA8 SER A 206 GLY A 216 1 11 HELIX 9 AA9 CYS A 222 LEU A 226 5 5 HELIX 10 AB1 PRO A 227 GLY A 242 1 16 HELIX 11 AB2 THR A 246 SER A 249 5 4 HELIX 12 AB3 TYR A 250 LEU A 258 1 9 HELIX 13 AB4 THR A 262 GLN A 268 1 7 HELIX 14 AB5 LEU A 276 ARG A 285 1 10 HELIX 15 AB6 SER A 289 LYS A 298 1 10 HELIX 16 AB7 THR A 303 ARG A 317 1 15 HELIX 17 AB8 LYS A 319 ASN A 329 1 11 HELIX 18 AB9 THR A 341 LYS A 353 1 13 HELIX 19 AC1 LYS A 362 PHE A 366 5 5 HELIX 20 AC2 HIS A 368 SER A 382 1 15 HELIX 21 AC3 PRO A 388 LEU A 395 1 8 HELIX 22 AC4 LEU A 395 HIS A 400 1 6 HELIX 23 AC5 HIS B 14 THR B 28 1 15 HELIX 24 AC6 SER B 51 GLN B 61 1 11 HELIX 25 AC7 PRO B 71 VAL B 76 1 6 HELIX 26 AC8 LYS B 78 LEU B 93 1 16 HELIX 27 AC9 ILE B 107 LYS B 133 1 27 HELIX 28 AD1 SER B 137 SER B 148 1 12 HELIX 29 AD2 LYS B 160 GLY B 177 1 18 HELIX 30 AD3 SER B 206 GLY B 216 1 11 HELIX 31 AD4 LEU B 219 LEU B 226 5 8 HELIX 32 AD5 PRO B 227 GLY B 242 1 16 HELIX 33 AD6 THR B 246 SER B 249 5 4 HELIX 34 AD7 TYR B 250 THR B 260 1 11 HELIX 35 AD8 THR B 262 GLN B 268 1 7 HELIX 36 AD9 GLY B 275 LYS B 286 1 12 HELIX 37 AE1 SER B 289 LYS B 298 1 10 HELIX 38 AE2 THR B 303 ARG B 317 1 15 HELIX 39 AE3 LYS B 319 ASP B 328 1 10 HELIX 40 AE4 THR B 341 LYS B 352 1 12 HELIX 41 AE5 LYS B 353 LEU B 355 5 3 HELIX 42 AE6 LYS B 362 PHE B 366 5 5 HELIX 43 AE7 HIS B 368 SER B 382 1 15 HELIX 44 AE8 PRO B 388 ASP B 394 1 7 SHEET 1 AA1 7 LYS A 181 ALA A 186 0 SHEET 2 AA1 7 CYS A 95 SER A 102 1 N LEU A 98 O TYR A 183 SHEET 3 AA1 7 ALA A 3 VAL A 8 1 N GLY A 5 O ALA A 97 SHEET 4 AA1 7 THR A 32 SER A 38 1 O THR A 32 N VAL A 4 SHEET 5 AA1 7 LEU A 66 LEU A 70 1 O LEU A 70 N MET A 37 SHEET 6 AA1 7 ILE A 335 MET A 340 -1 O GLY A 339 N VAL A 67 SHEET 7 AA1 7 LEU A 359 VAL A 360 1 O VAL A 360 N ILE A 335 SHEET 1 AA2 7 LYS A 181 ALA A 186 0 SHEET 2 AA2 7 CYS A 95 SER A 102 1 N LEU A 98 O TYR A 183 SHEET 3 AA2 7 ALA A 3 VAL A 8 1 N GLY A 5 O ALA A 97 SHEET 4 AA2 7 THR A 32 SER A 38 1 O THR A 32 N VAL A 4 SHEET 5 AA2 7 LEU A 66 LEU A 70 1 O LEU A 70 N MET A 37 SHEET 6 AA2 7 ILE A 335 MET A 340 -1 O GLY A 339 N VAL A 67 SHEET 7 AA2 7 ILE A 403 ARG A 404 1 O ILE A 403 N LEU A 338 SHEET 1 AA3 7 LYS B 181 THR B 185 0 SHEET 2 AA3 7 ALA B 97 GLY B 101 1 N PHE B 100 O TYR B 183 SHEET 3 AA3 7 ALA B 3 VAL B 8 1 N GLY B 5 O ALA B 97 SHEET 4 AA3 7 THR B 32 SER B 38 1 O VAL B 36 N VAL B 8 SHEET 5 AA3 7 LEU B 66 LEU B 70 1 O LEU B 66 N ALA B 35 SHEET 6 AA3 7 ILE B 335 MET B 340 -1 O GLY B 339 N VAL B 67 SHEET 7 AA3 7 LEU B 359 VAL B 360 1 O VAL B 360 N LEU B 337 SHEET 1 AA4 8 LYS B 181 THR B 185 0 SHEET 2 AA4 8 ALA B 97 GLY B 101 1 N PHE B 100 O TYR B 183 SHEET 3 AA4 8 ALA B 3 VAL B 8 1 N GLY B 5 O ALA B 97 SHEET 4 AA4 8 THR B 32 SER B 38 1 O VAL B 36 N VAL B 8 SHEET 5 AA4 8 LEU B 66 LEU B 70 1 O LEU B 66 N ALA B 35 SHEET 6 AA4 8 ILE B 335 MET B 340 -1 O GLY B 339 N VAL B 67 SHEET 7 AA4 8 ILE B 403 ASP B 406 1 O TYR B 405 N MET B 340 SHEET 8 AA4 8 HIS B 411 PHE B 412 -1 O HIS B 411 N ASP B 406 CISPEP 1 ASN A 11 PRO A 12 0 -8.06 CISPEP 2 SER A 154 ALA A 155 0 -8.04 CISPEP 3 GLU A 387 PRO A 388 0 -1.96 CISPEP 4 ASN B 11 PRO B 12 0 -4.39 CISPEP 5 GLU B 387 PRO B 388 0 3.00 SITE 1 AC1 14 VAL A 8 GLU A 9 TYR A 10 GLY A 16 SITE 2 AC1 14 HIS A 17 TYR A 19 HIS A 20 GLY A 101 SITE 3 AC1 14 ASN A 162 ARG A 187 ILE A 188 ILE A 204 SITE 4 AC1 14 ALA A 207 HOH A1123 SITE 1 AC2 14 GLU B 9 TYR B 10 HIS B 14 GLY B 16 SITE 2 AC2 14 HIS B 17 ARG B 44 GLY B 101 ASN B 162 SITE 3 AC2 14 ALA B 186 ARG B 187 ILE B 188 ILE B 204 SITE 4 AC2 14 ALA B 207 HOH B1113 CRYST1 67.995 67.999 211.168 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014707 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004736 0.00000