data_5Y18 # _entry.id 5Y18 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.291 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5Y18 WWPDB D_1300004407 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5Y18 _pdbx_database_status.recvd_initial_deposition_date 2017-07-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, Y.' 1 ? 'Wang, X.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CN _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Protein Cell' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1674-8018 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first 767 _citation.page_last 771 _citation.title 'Structural basis for DAXX interaction with ATRX' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1007/s13238-017-0462-y _citation.pdbx_database_id_PubMed 28875424 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wang, X.' 1 primary 'Zhao, Y.' 2 primary 'Zhang, J.' 3 primary 'Chen, Y.' 4 # _cell.length_a 69.485 _cell.length_b 107.904 _cell.length_c 30.887 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 5Y18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 5Y18 _symmetry.Int_Tables_number 20 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Death domain-associated protein 6' 10995.709 1 ? ? 'UNP residues 55-144' ? 2 polymer man 'Transcriptional regulator ATRX' 2684.854 1 3.6.4.12 ? 'UNP residues 1268-1289' ? 3 water nat water 18.015 52 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Daxx,hDaxx,ETS1-associated protein 1,EAP1,Fas death domain-associated protein' 2 'ATP-dependent helicase ATRX,X-linked helicase II,X-linked nuclear protein,XNP,Znf-HX' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;GPLGSGKKCYKLENEKLFEEFLELCK(MSE)QTADHPEVVPFLYNRQQRAHSLFLASAEFCNILSRVLSRARSRPAKLYV YINELCTVLKAHSAKKKLN ; ;GPLGSGKKCYKLENEKLFEEFLELCKMQTADHPEVVPFLYNRQQRAHSLFLASAEFCNILSRVLSRARSRPAKLYVYINE LCTVLKAHSAKKKLN ; A ? 2 'polypeptide(L)' no yes 'SENRIAKK(MSE)LLEEIKANLSSDED' SENRIAKKMLLEEIKANLSSDED B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 GLY n 1 7 LYS n 1 8 LYS n 1 9 CYS n 1 10 TYR n 1 11 LYS n 1 12 LEU n 1 13 GLU n 1 14 ASN n 1 15 GLU n 1 16 LYS n 1 17 LEU n 1 18 PHE n 1 19 GLU n 1 20 GLU n 1 21 PHE n 1 22 LEU n 1 23 GLU n 1 24 LEU n 1 25 CYS n 1 26 LYS n 1 27 MSE n 1 28 GLN n 1 29 THR n 1 30 ALA n 1 31 ASP n 1 32 HIS n 1 33 PRO n 1 34 GLU n 1 35 VAL n 1 36 VAL n 1 37 PRO n 1 38 PHE n 1 39 LEU n 1 40 TYR n 1 41 ASN n 1 42 ARG n 1 43 GLN n 1 44 GLN n 1 45 ARG n 1 46 ALA n 1 47 HIS n 1 48 SER n 1 49 LEU n 1 50 PHE n 1 51 LEU n 1 52 ALA n 1 53 SER n 1 54 ALA n 1 55 GLU n 1 56 PHE n 1 57 CYS n 1 58 ASN n 1 59 ILE n 1 60 LEU n 1 61 SER n 1 62 ARG n 1 63 VAL n 1 64 LEU n 1 65 SER n 1 66 ARG n 1 67 ALA n 1 68 ARG n 1 69 SER n 1 70 ARG n 1 71 PRO n 1 72 ALA n 1 73 LYS n 1 74 LEU n 1 75 TYR n 1 76 VAL n 1 77 TYR n 1 78 ILE n 1 79 ASN n 1 80 GLU n 1 81 LEU n 1 82 CYS n 1 83 THR n 1 84 VAL n 1 85 LEU n 1 86 LYS n 1 87 ALA n 1 88 HIS n 1 89 SER n 1 90 ALA n 1 91 LYS n 1 92 LYS n 1 93 LYS n 1 94 LEU n 1 95 ASN n 2 1 SER n 2 2 GLU n 2 3 ASN n 2 4 ARG n 2 5 ILE n 2 6 ALA n 2 7 LYS n 2 8 LYS n 2 9 MSE n 2 10 LEU n 2 11 LEU n 2 12 GLU n 2 13 GLU n 2 14 ILE n 2 15 LYS n 2 16 ALA n 2 17 ASN n 2 18 LEU n 2 19 SER n 2 20 SER n 2 21 ASP n 2 22 GLU n 2 23 ASP n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 95 Human ? 'DAXX, BING2, DAP6' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 23 Human ? 'ATRX, RAD54L, XH2' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP DAXX_HUMAN Q9UER7 ? 1 ;GKKCYKLENEKLFEEFLELCKMQTADHPEVVPFLYNRQQRAHSLFLASAEFCNILSRVLSRARSRPAKLYVYINELCTVL KAHSAKKKLN ; 55 2 UNP ATRX_HUMAN P46100 ? 2 ENRIAKKMLLEEIKANLSSDED 1268 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5Y18 A 6 ? 95 ? Q9UER7 55 ? 144 ? 55 144 2 2 5Y18 B 2 ? 23 ? P46100 1268 ? 1289 ? 1268 1289 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5Y18 GLY A 1 ? UNP Q9UER7 ? ? 'expression tag' 50 1 1 5Y18 PRO A 2 ? UNP Q9UER7 ? ? 'expression tag' 51 2 1 5Y18 LEU A 3 ? UNP Q9UER7 ? ? 'expression tag' 52 3 1 5Y18 GLY A 4 ? UNP Q9UER7 ? ? 'expression tag' 53 4 1 5Y18 SER A 5 ? UNP Q9UER7 ? ? 'expression tag' 54 5 2 5Y18 SER B 1 ? UNP P46100 ? ? 'see sequence details' 1267 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5Y18 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M sodium citrate, pH6.5, 0.2M ammonium acetate, 30% PEG4000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-01-27 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9785 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9785 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.entry_id 5Y18 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.200 _reflns.number_obs 6179 _reflns.number_all ? _reflns.percent_possible_obs 99.600 _reflns.pdbx_Rmerge_I_obs 0.077 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.600 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.200 _reflns.pdbx_Rrim_I_all 0.084 _reflns.pdbx_Rpim_I_all 0.033 _reflns.pdbx_CC_half ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 38355 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_chi_squared 0.851 _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 2.200 2.280 ? ? 594 ? 0.413 ? ? 0.957 5.400 ? ? ? ? ? ? ? ? 99.800 0.457 0.192 0.901 1 2 2.280 2.370 ? ? 615 ? 0.303 ? ? 1.004 6.100 ? ? ? ? ? ? ? ? 99.500 0.332 0.132 0.950 1 3 2.370 2.480 ? ? 589 ? 0.256 ? ? 0.991 6.500 ? ? ? ? ? ? ? ? 100.000 0.279 0.108 0.957 1 4 2.480 2.610 ? ? 610 ? 0.190 ? ? 0.970 6.500 ? ? ? ? ? ? ? ? 99.700 0.206 0.080 0.975 1 5 2.610 2.770 ? ? 606 ? 0.153 ? ? 0.927 6.200 ? ? ? ? ? ? ? ? 99.300 0.167 0.066 0.982 1 6 2.770 2.990 ? ? 616 ? 0.122 ? ? 0.853 6.400 ? ? ? ? ? ? ? ? 100.000 0.132 0.051 0.988 1 7 2.990 3.290 ? ? 616 ? 0.084 ? ? 0.726 6.500 ? ? ? ? ? ? ? ? 99.800 0.091 0.036 0.990 1 8 3.290 3.760 ? ? 627 ? 0.056 ? ? 0.710 6.200 ? ? ? ? ? ? ? ? 98.900 0.061 0.024 0.997 1 9 3.760 4.740 ? ? 629 ? 0.044 ? ? 0.648 6.500 ? ? ? ? ? ? ? ? 99.800 0.048 0.019 0.997 1 10 4.740 50.000 ? ? 677 ? 0.053 ? ? 0.771 5.800 ? ? ? ? ? ? ? ? 98.800 0.058 0.024 0.995 # _refine.entry_id 5Y18 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.2020 _refine.ls_d_res_low 26.9760 _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.1400 _refine.ls_number_reflns_obs 6142 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1880 _refine.ls_R_factor_R_work 0.1865 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2192 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0600 _refine.ls_number_reflns_R_free 311 _refine.ls_number_reflns_R_work 5831 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 37.3050 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2300 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 100.660 _refine.B_iso_min 19.930 _refine.pdbx_overall_phase_error 21.3400 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.2020 _refine_hist.d_res_low 26.9760 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 866 _refine_hist.pdbx_number_residues_total 102 _refine_hist.pdbx_B_iso_mean_solvent 45.32 _refine_hist.pdbx_number_atoms_protein 814 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 827 0.002 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1109 0.530 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 127 0.020 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 138 0.002 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 314 13.787 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id 2.2024 2.7743 2 99.0000 2843 . 0.2067 0.2632 . 148 0.0000 2991 . 'X-RAY DIFFRACTION' 2.7743 26.9780 2 99.0000 2988 . 0.1791 0.2024 . 163 0.0000 3151 . 'X-RAY DIFFRACTION' # _struct.entry_id 5Y18 _struct.title 'Crystal structure of DAXX helical bundle domain in complex with ATRX' _struct.pdbx_descriptor 'Death domain-associated protein 6, ATRX' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5Y18 _struct_keywords.text 'chromatin remodeling, histone chaperone, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 CYS A 9 ? THR A 29 ? CYS A 58 THR A 78 1 ? 21 HELX_P HELX_P2 AA2 GLU A 34 ? ARG A 45 ? GLU A 83 ARG A 94 1 ? 12 HELX_P HELX_P3 AA3 HIS A 47 ? ALA A 52 ? HIS A 96 ALA A 101 1 ? 6 HELX_P HELX_P4 AA4 SER A 53 ? ARG A 70 ? SER A 102 ARG A 119 1 ? 18 HELX_P HELX_P5 AA5 LYS A 73 ? HIS A 88 ? LYS A 122 HIS A 137 1 ? 16 HELX_P HELX_P6 AA6 GLU B 2 ? ASN B 17 ? GLU B 1268 ASN B 1283 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A LYS 26 C ? ? ? 1_555 A MSE 27 N ? ? A LYS 75 A MSE 76 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale both ? A MSE 27 C ? ? ? 1_555 A GLN 28 N ? ? A MSE 76 A GLN 77 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale both ? B LYS 8 C ? ? ? 1_555 B MSE 9 N ? ? B LYS 1274 B MSE 1275 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale both ? B MSE 9 C ? ? ? 1_555 B LEU 10 N ? ? B MSE 1275 B LEU 1276 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 5Y18 _atom_sites.fract_transf_matrix[1][1] 0.014392 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009267 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.032376 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 50 ? ? ? A . n A 1 2 PRO 2 51 ? ? ? A . n A 1 3 LEU 3 52 ? ? ? A . n A 1 4 GLY 4 53 ? ? ? A . n A 1 5 SER 5 54 ? ? ? A . n A 1 6 GLY 6 55 ? ? ? A . n A 1 7 LYS 7 56 56 LYS LYS A . n A 1 8 LYS 8 57 57 LYS LYS A . n A 1 9 CYS 9 58 58 CYS CYS A . n A 1 10 TYR 10 59 59 TYR TYR A . n A 1 11 LYS 11 60 60 LYS LYS A . n A 1 12 LEU 12 61 61 LEU LEU A . n A 1 13 GLU 13 62 62 GLU GLU A . n A 1 14 ASN 14 63 63 ASN ASN A . n A 1 15 GLU 15 64 64 GLU GLU A . n A 1 16 LYS 16 65 65 LYS LYS A . n A 1 17 LEU 17 66 66 LEU LEU A . n A 1 18 PHE 18 67 67 PHE PHE A . n A 1 19 GLU 19 68 68 GLU GLU A . n A 1 20 GLU 20 69 69 GLU GLU A . n A 1 21 PHE 21 70 70 PHE PHE A . n A 1 22 LEU 22 71 71 LEU LEU A . n A 1 23 GLU 23 72 72 GLU GLU A . n A 1 24 LEU 24 73 73 LEU LEU A . n A 1 25 CYS 25 74 74 CYS CYS A . n A 1 26 LYS 26 75 75 LYS LYS A . n A 1 27 MSE 27 76 76 MSE MSE A . n A 1 28 GLN 28 77 77 GLN GLN A . n A 1 29 THR 29 78 78 THR THR A . n A 1 30 ALA 30 79 79 ALA ALA A . n A 1 31 ASP 31 80 80 ASP ASP A . n A 1 32 HIS 32 81 81 HIS HIS A . n A 1 33 PRO 33 82 82 PRO PRO A . n A 1 34 GLU 34 83 83 GLU GLU A . n A 1 35 VAL 35 84 84 VAL VAL A . n A 1 36 VAL 36 85 85 VAL VAL A . n A 1 37 PRO 37 86 86 PRO PRO A . n A 1 38 PHE 38 87 87 PHE PHE A . n A 1 39 LEU 39 88 88 LEU LEU A . n A 1 40 TYR 40 89 89 TYR TYR A . n A 1 41 ASN 41 90 90 ASN ASN A . n A 1 42 ARG 42 91 91 ARG ARG A . n A 1 43 GLN 43 92 92 GLN GLN A . n A 1 44 GLN 44 93 93 GLN GLN A . n A 1 45 ARG 45 94 94 ARG ARG A . n A 1 46 ALA 46 95 95 ALA ALA A . n A 1 47 HIS 47 96 96 HIS HIS A . n A 1 48 SER 48 97 97 SER SER A . n A 1 49 LEU 49 98 98 LEU LEU A . n A 1 50 PHE 50 99 99 PHE PHE A . n A 1 51 LEU 51 100 100 LEU LEU A . n A 1 52 ALA 52 101 101 ALA ALA A . n A 1 53 SER 53 102 102 SER SER A . n A 1 54 ALA 54 103 103 ALA ALA A . n A 1 55 GLU 55 104 104 GLU GLU A . n A 1 56 PHE 56 105 105 PHE PHE A . n A 1 57 CYS 57 106 106 CYS CYS A . n A 1 58 ASN 58 107 107 ASN ASN A . n A 1 59 ILE 59 108 108 ILE ILE A . n A 1 60 LEU 60 109 109 LEU LEU A . n A 1 61 SER 61 110 110 SER SER A . n A 1 62 ARG 62 111 111 ARG ARG A . n A 1 63 VAL 63 112 112 VAL VAL A . n A 1 64 LEU 64 113 113 LEU LEU A . n A 1 65 SER 65 114 114 SER SER A . n A 1 66 ARG 66 115 115 ARG ARG A . n A 1 67 ALA 67 116 116 ALA ALA A . n A 1 68 ARG 68 117 117 ARG ARG A . n A 1 69 SER 69 118 118 SER SER A . n A 1 70 ARG 70 119 119 ARG ARG A . n A 1 71 PRO 71 120 120 PRO PRO A . n A 1 72 ALA 72 121 121 ALA ALA A . n A 1 73 LYS 73 122 122 LYS LYS A . n A 1 74 LEU 74 123 123 LEU LEU A . n A 1 75 TYR 75 124 124 TYR TYR A . n A 1 76 VAL 76 125 125 VAL VAL A . n A 1 77 TYR 77 126 126 TYR TYR A . n A 1 78 ILE 78 127 127 ILE ILE A . n A 1 79 ASN 79 128 128 ASN ASN A . n A 1 80 GLU 80 129 129 GLU GLU A . n A 1 81 LEU 81 130 130 LEU LEU A . n A 1 82 CYS 82 131 131 CYS CYS A . n A 1 83 THR 83 132 132 THR THR A . n A 1 84 VAL 84 133 133 VAL VAL A . n A 1 85 LEU 85 134 134 LEU LEU A . n A 1 86 LYS 86 135 135 LYS LYS A . n A 1 87 ALA 87 136 136 ALA ALA A . n A 1 88 HIS 88 137 137 HIS HIS A . n A 1 89 SER 89 138 138 SER SER A . n A 1 90 ALA 90 139 139 ALA ALA A . n A 1 91 LYS 91 140 140 LYS LYS A . n A 1 92 LYS 92 141 ? ? ? A . n A 1 93 LYS 93 142 ? ? ? A . n A 1 94 LEU 94 143 ? ? ? A . n A 1 95 ASN 95 144 ? ? ? A . n B 2 1 SER 1 1267 1267 SER SER B . n B 2 2 GLU 2 1268 1268 GLU GLU B . n B 2 3 ASN 3 1269 1269 ASN ASN B . n B 2 4 ARG 4 1270 1270 ARG ARG B . n B 2 5 ILE 5 1271 1271 ILE ILE B . n B 2 6 ALA 6 1272 1272 ALA ALA B . n B 2 7 LYS 7 1273 1273 LYS LYS B . n B 2 8 LYS 8 1274 1274 LYS LYS B . n B 2 9 MSE 9 1275 1275 MSE MSE B . n B 2 10 LEU 10 1276 1276 LEU LEU B . n B 2 11 LEU 11 1277 1277 LEU LEU B . n B 2 12 GLU 12 1278 1278 GLU GLU B . n B 2 13 GLU 13 1279 1279 GLU GLU B . n B 2 14 ILE 14 1280 1280 ILE ILE B . n B 2 15 LYS 15 1281 1281 LYS LYS B . n B 2 16 ALA 16 1282 1282 ALA ALA B . n B 2 17 ASN 17 1283 1283 ASN ASN B . n B 2 18 LEU 18 1284 ? ? ? B . n B 2 19 SER 19 1285 ? ? ? B . n B 2 20 SER 20 1286 ? ? ? B . n B 2 21 ASP 21 1287 ? ? ? B . n B 2 22 GLU 22 1288 ? ? ? B . n B 2 23 ASP 23 1289 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 201 8 HOH HOH A . C 3 HOH 2 202 46 HOH HOH A . C 3 HOH 3 203 14 HOH HOH A . C 3 HOH 4 204 20 HOH HOH A . C 3 HOH 5 205 18 HOH HOH A . C 3 HOH 6 206 37 HOH HOH A . C 3 HOH 7 207 1 HOH HOH A . C 3 HOH 8 208 4 HOH HOH A . C 3 HOH 9 209 3 HOH HOH A . C 3 HOH 10 210 12 HOH HOH A . C 3 HOH 11 211 7 HOH HOH A . C 3 HOH 12 212 5 HOH HOH A . C 3 HOH 13 213 21 HOH HOH A . C 3 HOH 14 214 2 HOH HOH A . C 3 HOH 15 215 41 HOH HOH A . C 3 HOH 16 216 17 HOH HOH A . C 3 HOH 17 217 39 HOH HOH A . C 3 HOH 18 218 26 HOH HOH A . C 3 HOH 19 219 9 HOH HOH A . C 3 HOH 20 220 29 HOH HOH A . C 3 HOH 21 221 10 HOH HOH A . C 3 HOH 22 222 25 HOH HOH A . C 3 HOH 23 223 32 HOH HOH A . C 3 HOH 24 224 35 HOH HOH A . C 3 HOH 25 225 24 HOH HOH A . C 3 HOH 26 226 50 HOH HOH A . C 3 HOH 27 227 11 HOH HOH A . C 3 HOH 28 228 6 HOH HOH A . C 3 HOH 29 229 48 HOH HOH A . C 3 HOH 30 230 34 HOH HOH A . C 3 HOH 31 231 15 HOH HOH A . C 3 HOH 32 232 22 HOH HOH A . C 3 HOH 33 233 40 HOH HOH A . C 3 HOH 34 234 13 HOH HOH A . C 3 HOH 35 235 19 HOH HOH A . C 3 HOH 36 236 36 HOH HOH A . C 3 HOH 37 237 27 HOH HOH A . C 3 HOH 38 238 16 HOH HOH A . C 3 HOH 39 239 49 HOH HOH A . C 3 HOH 40 240 28 HOH HOH A . C 3 HOH 41 241 42 HOH HOH A . C 3 HOH 42 242 31 HOH HOH A . C 3 HOH 43 243 43 HOH HOH A . C 3 HOH 44 244 51 HOH HOH A . C 3 HOH 45 245 30 HOH HOH A . C 3 HOH 46 246 47 HOH HOH A . D 3 HOH 1 1301 23 HOH HOH B . D 3 HOH 2 1302 44 HOH HOH B . D 3 HOH 3 1303 33 HOH HOH B . D 3 HOH 4 1304 45 HOH HOH B . D 3 HOH 5 1305 38 HOH HOH B . D 3 HOH 6 1306 52 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 27 A MSE 76 ? MET 'modified residue' 2 B MSE 9 B MSE 1275 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1100 ? 1 MORE -8 ? 1 'SSA (A^2)' 6200 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2018-05-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 26.3310 25.0628 0.9797 0.3184 0.3109 0.3365 -0.0112 0.0168 0.1024 3.6475 7.9241 3.8255 -1.9783 -2.0285 5.0986 -0.1818 0.1498 0.0172 0.0202 0.1687 -0.1314 0.0206 -0.1200 0.1278 'X-RAY DIFFRACTION' 2 ? refined 16.8909 18.2917 0.1513 0.3255 0.3344 0.2959 -0.0116 0.0376 0.0200 1.7565 4.6030 3.0934 0.6517 -0.7152 3.0218 -0.0925 0.0980 0.1747 0.2594 -0.2453 0.0014 -0.2444 0.1698 -0.6507 'X-RAY DIFFRACTION' 3 ? refined 30.8467 18.0519 5.8071 0.2940 0.2951 0.2486 -0.0049 -0.0039 0.0118 8.8208 7.0855 5.1491 -5.4433 -5.9239 5.7436 -0.4343 0.3921 0.0739 -0.2436 -0.0844 0.0786 0.2719 0.4513 0.3193 'X-RAY DIFFRACTION' 4 ? refined 21.8708 12.4191 3.4963 0.3317 0.2273 0.3700 -0.0570 0.0677 0.0137 8.6860 4.0520 6.3965 -1.5041 -4.3038 2.6236 -0.2751 0.0973 0.1555 0.0724 -1.1444 0.2732 -0.0122 -0.0622 -0.1157 'X-RAY DIFFRACTION' 5 ? refined 20.0800 4.0052 -3.7211 0.4126 0.2896 0.5627 -0.1042 0.0784 -0.0182 2.2715 6.3317 5.3112 -3.3454 1.7945 -0.3042 -0.2119 0.6226 -0.2902 -0.2672 -1.0373 0.4950 0.0333 0.6331 -0.5295 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 56 A 77 ;chain 'A' and (resid 56 through 77 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 78 A 102 ;chain 'A' and (resid 78 through 102 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 103 A 119 ;chain 'A' and (resid 103 through 119 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 120 A 140 ;chain 'A' and (resid 120 through 140 ) ; ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 B 0 B 0 ;chain 'B' and (resid 1267 through 1283 ) ; ? ? ? ? ? # _phasing.method SAD # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHARP ? ? ? . 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 5 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 6 # _pdbx_entry_details.entry_id 5Y18 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'Authors state that the extra residue S is a remained residue after cleavage of fusion tag.' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLN _pdbx_validate_close_contact.auth_seq_id_1 77 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 201 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 237 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 240 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_554 _pdbx_validate_symm_contact.dist 1.96 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 56 ? CG ? A LYS 7 CG 2 1 Y 1 A LYS 56 ? CD ? A LYS 7 CD 3 1 Y 1 A LYS 56 ? CE ? A LYS 7 CE 4 1 Y 1 A LYS 56 ? NZ ? A LYS 7 NZ 5 1 Y 1 A GLU 69 ? CD ? A GLU 20 CD 6 1 Y 1 A GLU 69 ? OE1 ? A GLU 20 OE1 7 1 Y 1 A GLU 69 ? OE2 ? A GLU 20 OE2 8 1 Y 1 A LYS 75 ? CE ? A LYS 26 CE 9 1 Y 1 A LYS 75 ? NZ ? A LYS 26 NZ 10 1 Y 1 A ARG 94 ? NH1 ? A ARG 45 NH1 11 1 Y 1 A ARG 94 ? NH2 ? A ARG 45 NH2 12 1 Y 1 A ARG 115 ? CZ ? A ARG 66 CZ 13 1 Y 1 A ARG 115 ? NH1 ? A ARG 66 NH1 14 1 Y 1 A ARG 115 ? NH2 ? A ARG 66 NH2 15 1 Y 1 B ARG 1270 ? CZ ? B ARG 4 CZ 16 1 Y 1 B ARG 1270 ? NH1 ? B ARG 4 NH1 17 1 Y 1 B ARG 1270 ? NH2 ? B ARG 4 NH2 18 1 Y 1 B LYS 1281 ? CD ? B LYS 15 CD 19 1 Y 1 B LYS 1281 ? CE ? B LYS 15 CE 20 1 Y 1 B LYS 1281 ? NZ ? B LYS 15 NZ 21 1 Y 1 B ASN 1283 ? CG ? B ASN 17 CG 22 1 Y 1 B ASN 1283 ? OD1 ? B ASN 17 OD1 23 1 Y 1 B ASN 1283 ? ND2 ? B ASN 17 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 50 ? A GLY 1 2 1 Y 1 A PRO 51 ? A PRO 2 3 1 Y 1 A LEU 52 ? A LEU 3 4 1 Y 1 A GLY 53 ? A GLY 4 5 1 Y 1 A SER 54 ? A SER 5 6 1 Y 1 A GLY 55 ? A GLY 6 7 1 Y 1 A LYS 141 ? A LYS 92 8 1 Y 1 A LYS 142 ? A LYS 93 9 1 Y 1 A LEU 143 ? A LEU 94 10 1 Y 1 A ASN 144 ? A ASN 95 11 1 Y 1 B LEU 1284 ? B LEU 18 12 1 Y 1 B SER 1285 ? B SER 19 13 1 Y 1 B SER 1286 ? B SER 20 14 1 Y 1 B ASP 1287 ? B ASP 21 15 1 Y 1 B GLU 1288 ? B GLU 22 16 1 Y 1 B ASP 1289 ? B ASP 23 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details 'A,B forms a heterodimer.' #