HEADER HYDROLASE/PEPTIDE 25-JUL-17 5Y2F TITLE HUMAN SIRT6 IN COMPLEX WITH ALLOSTERIC ACTIVATOR MDL-801 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 3-318; COMPND 5 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG 6,SIR2-LIKE PROTEIN 6; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 9-MER PEPTIDE QTARKSTGG; COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT6, SIR2L6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS AGNONIST, COMPLEX, SIRT6, HYDROLASE-PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHANG,Z.HUANG,K.SONG REVDAT 3 28-NOV-18 5Y2F 1 JRNL REVDAT 2 14-NOV-18 5Y2F 1 JRNL REVDAT 1 07-NOV-18 5Y2F 0 JRNL AUTH Z.HUANG,J.ZHAO,W.DENG,Y.CHEN,J.SHANG,K.SONG,L.ZHANG,C.WANG, JRNL AUTH 2 S.LU,X.YANG,B.HE,J.MIN,H.HU,M.TAN,J.XU,Q.ZHANG,J.ZHONG, JRNL AUTH 3 X.SUN,Z.MAO,H.LIN,M.XIAO,Y.E.CHIN,H.JIANG,Y.XU,G.CHEN, JRNL AUTH 4 J.ZHANG JRNL TITL IDENTIFICATION OF A CELLULARLY ACTIVE SIRT6 ALLOSTERIC JRNL TITL 2 ACTIVATOR. JRNL REF NAT. CHEM. BIOL. V. 14 1118 2018 JRNL REFN ESSN 1552-4469 JRNL PMID 30374165 JRNL DOI 10.1038/S41589-018-0150-0 REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 114.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 23520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1261 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1734 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 158 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.575 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2584 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2473 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3502 ; 1.576 ; 2.038 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5689 ; 0.990 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 5.846 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;35.347 ;22.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 417 ;14.924 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;18.681 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 387 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2771 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 563 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1223 ; 4.401 ; 6.492 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1222 ; 4.401 ; 6.486 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1527 ; 6.958 ; 9.710 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1528 ; 6.958 ; 9.716 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1359 ; 5.217 ; 7.544 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1359 ; 5.212 ; 7.545 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1976 ; 8.344 ;11.078 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2769 ;12.941 ;53.905 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2738 ;13.005 ;53.895 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5Y2F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004561. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24828 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 114.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 42.70 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 41.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M (NH4)2SO4, 0.1 M MES PH 6.5, 20% REMARK 280 W/V PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 81.21100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.21100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 81.21100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.21100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 81.21100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 81.21100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 81.21100 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 81.21100 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 81.21100 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 81.21100 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 81.21100 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 81.21100 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 81.21100 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 81.21100 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 81.21100 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 81.21100 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 81.21100 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 81.21100 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 121.81650 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 40.60550 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 40.60550 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 121.81650 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 121.81650 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 121.81650 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 40.60550 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 40.60550 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 121.81650 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 40.60550 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 121.81650 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 40.60550 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 121.81650 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 40.60550 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 40.60550 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 40.60550 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 121.81650 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 40.60550 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 121.81650 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 121.81650 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 121.81650 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 40.60550 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 40.60550 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 121.81650 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 121.81650 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 40.60550 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 40.60550 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 40.60550 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 40.60550 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 121.81650 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 40.60550 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 121.81650 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 40.60550 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 121.81650 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 121.81650 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 121.81650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 298 REMARK 465 GLU A 299 REMARK 465 GLU A 300 REMARK 465 SER A 301 REMARK 465 PRO A 302 REMARK 465 THR A 303 REMARK 465 ARG A 304 REMARK 465 ILE A 305 REMARK 465 ASN A 306 REMARK 465 GLY A 307 REMARK 465 SER A 308 REMARK 465 ILE A 309 REMARK 465 PRO A 310 REMARK 465 ALA A 311 REMARK 465 GLY A 312 REMARK 465 PRO A 313 REMARK 465 LYS A 314 REMARK 465 GLN A 315 REMARK 465 GLU A 316 REMARK 465 GLN C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 292 123.42 -39.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 HDR C 101 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 139 SG REMARK 620 2 CYS A 142 SG 111.9 REMARK 620 3 CYS A 164 SG 98.6 116.4 REMARK 620 4 CYS A 175 SG 100.9 120.7 105.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AR6 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8L9 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HDR C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 102 DBREF 5Y2F A 1 316 UNP Q8N6T7 SIR6_HUMAN 3 318 DBREF 5Y2F C 1 9 PDB 5Y2F 5Y2F 1 9 SEQRES 1 A 316 VAL ASN TYR ALA ALA GLY LEU SER PRO TYR ALA ASP LYS SEQRES 2 A 316 GLY LYS CYS GLY LEU PRO GLU ILE PHE ASP PRO PRO GLU SEQRES 3 A 316 GLU LEU GLU ARG LYS VAL TRP GLU LEU ALA ARG LEU VAL SEQRES 4 A 316 TRP GLN SER SER SER VAL VAL PHE HIS THR GLY ALA GLY SEQRES 5 A 316 ILE SER THR ALA SER GLY ILE PRO ASP PHE ARG GLY PRO SEQRES 6 A 316 HIS GLY VAL TRP THR MET GLU GLU ARG GLY LEU ALA PRO SEQRES 7 A 316 LYS PHE ASP THR THR PHE GLU SER ALA ARG PRO THR GLN SEQRES 8 A 316 THR HIS MET ALA LEU VAL GLN LEU GLU ARG VAL GLY LEU SEQRES 9 A 316 LEU ARG PHE LEU VAL SER GLN ASN VAL ASP GLY LEU HIS SEQRES 10 A 316 VAL ARG SER GLY PHE PRO ARG ASP LYS LEU ALA GLU LEU SEQRES 11 A 316 HIS GLY ASN MET PHE VAL GLU GLU CYS ALA LYS CYS LYS SEQRES 12 A 316 THR GLN TYR VAL ARG ASP THR VAL VAL GLY THR MET GLY SEQRES 13 A 316 LEU LYS ALA THR GLY ARG LEU CYS THR VAL ALA LYS ALA SEQRES 14 A 316 ARG GLY LEU ARG ALA CYS ARG GLY GLU LEU ARG ASP THR SEQRES 15 A 316 ILE LEU ASP TRP GLU ASP SER LEU PRO ASP ARG ASP LEU SEQRES 16 A 316 ALA LEU ALA ASP GLU ALA SER ARG ASN ALA ASP LEU SER SEQRES 17 A 316 ILE THR LEU GLY THR SER LEU GLN ILE ARG PRO SER GLY SEQRES 18 A 316 ASN LEU PRO LEU ALA THR LYS ARG ARG GLY GLY ARG LEU SEQRES 19 A 316 VAL ILE VAL ASN LEU GLN PRO THR LYS HIS ASP ARG HIS SEQRES 20 A 316 ALA ASP LEU ARG ILE HIS GLY TYR VAL ASP GLU VAL MET SEQRES 21 A 316 THR ARG LEU MET LYS HIS LEU GLY LEU GLU ILE PRO ALA SEQRES 22 A 316 TRP ASP GLY PRO ARG VAL LEU GLU ARG ALA LEU PRO PRO SEQRES 23 A 316 LEU PRO ARG PRO PRO THR PRO LYS LEU GLU PRO LYS GLU SEQRES 24 A 316 GLU SER PRO THR ARG ILE ASN GLY SER ILE PRO ALA GLY SEQRES 25 A 316 PRO LYS GLN GLU SEQRES 1 C 9 GLN THR ALA ARG LYS SER THR GLY GLY HET AR6 A 401 36 HET 8L9 A 402 34 HET ZN A 403 1 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HET SO4 A 409 5 HET SO4 A 410 5 HET SO4 A 411 5 HET SO4 A 412 5 HET SO4 A 413 5 HET SO4 A 414 5 HET PEG A 415 7 HET HDR C 101 15 HET SO4 C 102 5 HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETNAM 8L9 5-[[3,5-BIS(CHLORANYL)PHENYL]SULFONYLAMINO]-2-[(5- HETNAM 2 8L9 BROMANYL-4-FLUORANYL-2-METHYL-PHENYL)SULFAMOYL]BENZOIC HETNAM 3 8L9 ACID HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM HDR HEXADECANE-1-SULFINIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 AR6 C15 H23 N5 O14 P2 FORMUL 4 8L9 C20 H14 BR CL2 F N2 O6 S2 FORMUL 5 ZN ZN 2+ FORMUL 6 GOL 5(C3 H8 O3) FORMUL 11 SO4 7(O4 S 2-) FORMUL 17 PEG C4 H10 O3 FORMUL 18 HDR C16 H34 O2 S FORMUL 20 HOH *132(H2 O) HELIX 1 AA1 PRO A 24 SER A 42 1 19 HELIX 2 AA2 ALA A 51 GLY A 58 5 8 HELIX 3 AA3 GLY A 67 ARG A 74 1 8 HELIX 4 AA4 THR A 90 VAL A 102 1 13 HELIX 5 AA5 GLY A 115 SER A 120 1 6 HELIX 6 AA6 PRO A 123 ASP A 125 5 3 HELIX 7 AA7 PRO A 191 ALA A 205 1 15 HELIX 8 AA8 PRO A 219 GLY A 221 5 3 HELIX 9 AA9 ASN A 222 ARG A 230 1 9 HELIX 10 AB1 HIS A 244 ALA A 248 5 5 HELIX 11 AB2 TYR A 255 GLY A 268 1 14 SHEET 1 AA1 6 LEU A 127 GLU A 129 0 SHEET 2 AA1 6 PHE A 107 SER A 110 1 N SER A 110 O ALA A 128 SHEET 3 AA1 6 VAL A 45 THR A 49 1 N PHE A 47 O VAL A 109 SHEET 4 AA1 6 LEU A 207 LEU A 211 1 O LEU A 211 N HIS A 48 SHEET 5 AA1 6 ARG A 233 VAL A 237 1 O VAL A 237 N THR A 210 SHEET 6 AA1 6 LEU A 250 ILE A 252 1 O ILE A 252 N ILE A 236 SHEET 1 AA2 4 GLN A 145 VAL A 147 0 SHEET 2 AA2 4 VAL A 136 CYS A 139 -1 N GLU A 137 O TYR A 146 SHEET 3 AA2 4 GLU A 178 ASP A 181 -1 O ARG A 180 N GLU A 138 SHEET 4 AA2 4 ALA A 159 LEU A 163 -1 N THR A 160 O LEU A 179 LINK SG CYS A 139 ZN ZN A 403 1555 1555 2.36 LINK SG CYS A 142 ZN ZN A 403 1555 1555 2.29 LINK SG CYS A 164 ZN ZN A 403 1555 1555 2.29 LINK SG CYS A 175 ZN ZN A 403 1555 1555 2.34 LINK NZ LYS C 5 C1 HDR C 101 1555 1555 1.34 CISPEP 1 ARG A 218 PRO A 219 0 -2.63 SITE 1 AC1 29 GLU A 20 GLY A 50 ALA A 51 GLY A 52 SITE 2 AC1 29 THR A 55 ASP A 61 PHE A 62 ARG A 63 SITE 3 AC1 29 TRP A 69 GLN A 111 HIS A 131 GLY A 212 SITE 4 AC1 29 THR A 213 SER A 214 ILE A 217 ASN A 238 SITE 5 AC1 29 LEU A 239 GLN A 240 GLY A 254 TYR A 255 SITE 6 AC1 29 VAL A 256 SO4 A 412 HOH A 508 HOH A 527 SITE 7 AC1 29 HOH A 531 HOH A 559 HOH A 574 LYS C 5 SITE 8 AC1 29 HDR C 101 SITE 1 AC2 11 ASN A 2 GLU A 72 PHE A 80 THR A 83 SITE 2 AC2 11 PHE A 84 GLU A 85 MET A 134 VAL A 151 SITE 3 AC2 11 GOL A 408 HOH A 603 HDR C 101 SITE 1 AC3 4 CYS A 139 CYS A 142 CYS A 164 CYS A 175 SITE 1 AC4 7 GLU A 187 LYS A 243 HIS A 244 ARG A 246 SITE 2 AC4 7 HIS A 247 HOH A 521 HOH C 205 SITE 1 AC5 6 ARG A 124 GLN A 145 GLU A 281 ARG A 282 SITE 2 AC5 6 HOH A 526 HOH A 587 SITE 1 AC6 2 LYS A 228 HIS A 247 SITE 1 AC7 4 GLU A 34 ARG A 37 GLN A 41 ARG A 233 SITE 1 AC8 6 ALA A 5 MET A 134 GLY A 153 THR A 154 SITE 2 AC8 6 MET A 155 8L9 A 402 SITE 1 AC9 1 ARG A 180 SITE 1 AD1 2 ALA A 159 THR A 160 SITE 1 AD2 5 ARG A 218 PRO A 219 ASN A 222 PEG A 415 SITE 2 AD2 5 HOH C 201 SITE 1 AD3 5 GLU A 20 THR A 55 AR6 A 401 HOH A 511 SITE 2 AD3 5 HOH A 581 SITE 1 AD4 3 LYS A 31 ARG A 251 HIS A 253 SITE 1 AD5 3 TRP A 33 LYS A 265 HOH A 555 SITE 1 AD6 3 ASP A 199 SO4 A 411 ALA C 3 SITE 1 AD7 6 MET A 155 LEU A 184 TRP A 186 AR6 A 401 SITE 2 AD7 6 8L9 A 402 LYS C 5 SITE 1 AD8 3 ALA C 3 ARG C 4 HOH C 201 CRYST1 162.422 162.422 162.422 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006157 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006157 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006157 0.00000