HEADER SIGNALING PROTEIN 28-JUL-17 5Y38 TITLE CRYSTAL STRUCTURE OF C7ORF59-HBXIP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAGULATOR COMPLEX PROTEIN LAMTOR5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ROADBLOCK DOMAIN; COMPND 5 SYNONYM: HEPATITIS B VIRUS X-INTERACTING PROTEIN,HBX-INTERACTING COMPND 6 PROTEIN,LATE ENDOSOMAL/LYSOSOMAL ADAPTOR AND MAPK AND MTOR ACTIVATOR COMPND 7 5; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RAGULATOR COMPLEX PROTEIN LAMTOR4; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: ROADBLOCK DOMAIN; COMPND 13 SYNONYM: LATE ENDOSOMAL/LYSOSOMAL ADAPTOR AND MAPK AND MTOR ACTIVATOR COMPND 14 4; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LAMTOR5, HBXIP, XIP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-DUET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: LAMTOR4, C7ORF59; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS RAGULATOR, LAMTOR, HBXIP, C7ORF59, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.ZHANG,J.DING REVDAT 2 22-NOV-23 5Y38 1 REMARK REVDAT 1 06-DEC-17 5Y38 0 JRNL AUTH T.ZHANG,R.WANG,Z.WANG,X.WANG,F.WANG,J.DING JRNL TITL STRUCTURAL BASIS FOR RAGULATOR FUNCTIONING AS A SCAFFOLD IN JRNL TITL 2 MEMBRANE-ANCHORING OF RAG GTPASES AND MTORC1 JRNL REF NAT COMMUN V. 8 1394 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29123114 JRNL DOI 10.1038/S41467-017-01567-4 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 4370 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 207 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 269 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE SET COUNT : 9 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1205 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.55000 REMARK 3 B22 (A**2) : -1.55000 REMARK 3 B33 (A**2) : 2.32000 REMARK 3 B12 (A**2) : -0.77000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.390 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.277 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 32.485 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1230 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1666 ; 1.075 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 160 ; 5.239 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 51 ;36.369 ;25.490 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 212 ;20.271 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;12.664 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 204 ; 0.302 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 894 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1230 ; 6.794 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 6 ;11.466 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1224 ; 5.083 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1519 -11.2694 11.5014 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.1539 REMARK 3 T33: 0.0903 T12: -0.0106 REMARK 3 T13: -0.0081 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.3156 L22: 2.7392 REMARK 3 L33: 0.4419 L12: -1.2486 REMARK 3 L13: 0.1391 L23: -0.3054 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: 0.0069 S13: -0.1228 REMARK 3 S21: -0.0169 S22: 0.0124 S23: 0.0035 REMARK 3 S31: -0.0901 S32: 0.0750 S33: 0.0163 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 14 B 91 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8377 -29.0369 9.6399 REMARK 3 T TENSOR REMARK 3 T11: 0.1349 T22: 0.1361 REMARK 3 T33: 0.0981 T12: 0.0121 REMARK 3 T13: -0.0051 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 3.0507 L22: 2.5808 REMARK 3 L33: 1.0241 L12: -0.2330 REMARK 3 L13: -0.7211 L23: 0.1331 REMARK 3 S TENSOR REMARK 3 S11: -0.1032 S12: 0.0464 S13: -0.1264 REMARK 3 S21: -0.1264 S22: 0.0431 S23: -0.0942 REMARK 3 S31: 0.0324 S32: -0.0160 S33: 0.0601 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5Y38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1300004597. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4579 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MS6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M AMMONIUM SULFATE, 0.08 M SODIUM REMARK 280 ACETATE TRIHYDRATE (PH 4.6), AND 20% (W/V) PEG 4000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.00800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.00400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.00400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.00800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 83 REMARK 465 GLU A 84 REMARK 465 ALA A 85 REMARK 465 THR A 86 REMARK 465 LEU A 87 REMARK 465 GLU A 88 REMARK 465 SER A 173 REMARK 465 MET B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 ALA B 4 REMARK 465 LEU B 5 REMARK 465 THR B 6 REMARK 465 GLN B 7 REMARK 465 GLY B 8 REMARK 465 LEU B 9 REMARK 465 GLU B 10 REMARK 465 ARG B 11 REMARK 465 ILE B 12 REMARK 465 PRO B 13 REMARK 465 ARG B 92 REMARK 465 GLY B 93 REMARK 465 ARG B 94 REMARK 465 GLU B 95 REMARK 465 PRO B 96 REMARK 465 ILE B 97 REMARK 465 ASP B 98 REMARK 465 VAL B 99 REMARK 465 LEU B 100 REMARK 465 GLU B 101 REMARK 465 HIS B 102 REMARK 465 HIS B 103 REMARK 465 HIS B 104 REMARK 465 HIS B 105 REMARK 465 HIS B 106 REMARK 465 HIS B 107 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 153 42.69 -95.30 REMARK 500 GLU B 23 12.25 55.41 REMARK 500 PHE B 70 -153.40 -122.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 DBREF 5Y38 A 83 173 UNP O43504 LTOR5_HUMAN 1 91 DBREF 5Y38 B 1 99 UNP Q0VGL1 LTOR4_HUMAN 1 99 SEQADV 5Y38 MET B -1 UNP Q0VGL1 EXPRESSION TAG SEQADV 5Y38 GLY B 0 UNP Q0VGL1 EXPRESSION TAG SEQADV 5Y38 LEU B 100 UNP Q0VGL1 EXPRESSION TAG SEQADV 5Y38 GLU B 101 UNP Q0VGL1 EXPRESSION TAG SEQADV 5Y38 HIS B 102 UNP Q0VGL1 EXPRESSION TAG SEQADV 5Y38 HIS B 103 UNP Q0VGL1 EXPRESSION TAG SEQADV 5Y38 HIS B 104 UNP Q0VGL1 EXPRESSION TAG SEQADV 5Y38 HIS B 105 UNP Q0VGL1 EXPRESSION TAG SEQADV 5Y38 HIS B 106 UNP Q0VGL1 EXPRESSION TAG SEQADV 5Y38 HIS B 107 UNP Q0VGL1 EXPRESSION TAG SEQRES 1 A 91 MET GLU ALA THR LEU GLU GLN HIS LEU GLU ASP THR MET SEQRES 2 A 91 LYS ASN PRO SER ILE VAL GLY VAL LEU CYS THR ASP SER SEQRES 3 A 91 GLN GLY LEU ASN LEU GLY CYS ARG GLY THR LEU SER ASP SEQRES 4 A 91 GLU HIS ALA GLY VAL ILE SER VAL LEU ALA GLN GLN ALA SEQRES 5 A 91 ALA LYS LEU THR SER ASP PRO THR ASP ILE PRO VAL VAL SEQRES 6 A 91 CYS LEU GLU SER ASP ASN GLY ASN ILE MET ILE GLN LYS SEQRES 7 A 91 HIS ASP GLY ILE THR VAL ALA VAL HIS LYS MET ALA SER SEQRES 1 B 109 MET GLY MET THR SER ALA LEU THR GLN GLY LEU GLU ARG SEQRES 2 B 109 ILE PRO ASP GLN LEU GLY TYR LEU VAL LEU SER GLU GLY SEQRES 3 B 109 ALA VAL LEU ALA SER SER GLY ASP LEU GLU ASN ASP GLU SEQRES 4 B 109 GLN ALA ALA SER ALA ILE SER GLU LEU VAL SER THR ALA SEQRES 5 B 109 CYS GLY PHE ARG LEU HIS ARG GLY MET ASN VAL PRO PHE SEQRES 6 B 109 LYS ARG LEU SER VAL VAL PHE GLY GLU HIS THR LEU LEU SEQRES 7 B 109 VAL THR VAL SER GLY GLN ARG VAL PHE VAL VAL LYS ARG SEQRES 8 B 109 GLN ASN ARG GLY ARG GLU PRO ILE ASP VAL LEU GLU HIS SEQRES 9 B 109 HIS HIS HIS HIS HIS HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 B 201 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *10(H2 O) HELIX 1 AA1 GLN A 89 LYS A 96 1 8 HELIX 2 AA2 SER A 120 GLU A 122 5 3 HELIX 3 AA3 HIS A 123 LYS A 136 1 14 HELIX 4 AA4 ASP B 36 GLY B 52 1 17 SHEET 1 AA110 ASN A 112 GLY A 117 0 SHEET 2 AA110 ILE A 100 THR A 106 -1 N CYS A 105 O LEU A 113 SHEET 3 AA110 ILE A 164 LYS A 170 -1 O HIS A 169 N GLY A 102 SHEET 4 AA110 ASN A 155 HIS A 161 -1 N GLN A 159 O VAL A 166 SHEET 5 AA110 VAL A 146 GLU A 150 -1 N VAL A 147 O ILE A 158 SHEET 6 AA110 ARG B 65 VAL B 69 -1 O SER B 67 N CYS A 148 SHEET 7 AA110 HIS B 73 SER B 80 -1 O VAL B 77 N LEU B 66 SHEET 8 AA110 ARG B 83 GLN B 90 -1 O PHE B 85 N THR B 78 SHEET 9 AA110 GLN B 15 SER B 22 -1 N LEU B 16 O LYS B 88 SHEET 10 AA110 ALA B 25 GLY B 31 -1 O ALA B 25 N SER B 22 CISPEP 1 ASN B 60 VAL B 61 0 -6.18 SITE 1 AC1 4 SER A 108 GLN A 132 LYS A 160 GLY A 163 SITE 1 AC2 7 MET A 95 LYS A 96 ASN A 97 PRO A 98 SITE 2 AC2 7 ILE A 100 LEU A 111 ARG A 116 SITE 1 AC3 5 ALA A 135 THR A 138 SER A 139 ASP A 140 SITE 2 AC3 5 GLY B 81 CRYST1 58.541 58.541 90.012 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017082 0.009862 0.000000 0.00000 SCALE2 0.000000 0.019725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011110 0.00000