HEADER STRUCTURAL PROTEIN 01-AUG-17 5Y46 TITLE CRYSTAL STRUCTURE OF A COLLAGEN-LIKE PEPTIDE WITH INTERRUPTION TITLE 2 SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLLAGEN-LIKE PEPTIDE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS COLLAGEN, INTERRUPTION SEQUENCE, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.XU,J.LIU REVDAT 1 30-MAY-18 5Y46 0 JRNL AUTH T.XU,C.Z.ZHOU,J.XIAO,J.LIU JRNL TITL UNIQUE CONFORMATION IN A NATURAL INTERRUPTION SEQUENCE OF JRNL TITL 2 TYPE XIX COLLAGEN REVEALED BY ITS HIGH-RESOLUTION CRYSTAL JRNL TITL 3 STRUCTURE. JRNL REF BIOCHEMISTRY V. 57 1087 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 29376320 JRNL DOI 10.1021/ACS.BIOCHEM.7B01010 REMARK 2 REMARK 2 RESOLUTION. 1.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 26137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.108 REMARK 3 R VALUE (WORKING SET) : 0.106 REMARK 3 FREE R VALUE : 0.130 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1308 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1877 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.0980 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.1420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 522 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 5.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.022 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.023 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.013 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.532 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 629 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 510 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 933 ; 2.485 ; 2.538 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1284 ; 1.588 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 90 ; 7.574 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 10 ;14.860 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 97 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 697 ; 0.012 ; 0.030 REMARK 3 GENERAL PLANES OTHERS (A): 31 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1139 ; 1.849 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 70 ;11.156 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1204 ; 4.931 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5Y46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26137 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.030 REMARK 200 RESOLUTION RANGE LOW (A) : 26.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: ACORN REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M ZINC ACETATE DIHYDRATE, 20% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, PH 7.0, VAPOR DIFFUSION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 12.64500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 229 O HOH A 237 2.03 REMARK 500 O HOH B 246 O HOH B 247 2.10 REMARK 500 OD1 HYP B 24 O HOH B 201 2.15 REMARK 500 CD2 LEU C 14 O HOH C 141 2.19 REMARK 500 O HOH B 225 O HOH B 247 2.19 REMARK 500 OD1 HYP B 24 O HOH B 202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 HYP B 12 O HOH A 261 2656 1.73 REMARK 500 O HOH A 262 O HOH C 157 1354 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 1 N REMARK 620 2 GLY A 1 O 79.9 REMARK 620 3 HOH A 242 O 98.2 178.0 REMARK 620 4 HOH B 239 O 90.3 91.6 88.1 REMARK 620 5 HOH A 207 O 163.1 83.4 98.5 87.8 REMARK 620 6 HOH A 240 O 92.0 89.5 90.9 177.6 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 1 N REMARK 620 2 GLY B 1 O 77.9 REMARK 620 3 GLY C 1 N 121.4 90.4 REMARK 620 4 ACT B 101 OXT 132.6 89.9 104.1 REMARK 620 5 HYP C 27 OXT 103.9 59.1 32.2 108.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO B 2 and HYP B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP B 3 and GLY B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO B 5 and HYP B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP B 6 and GLY B 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO B 8 and HYP B 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP B 9 and GLY B 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO B 11 and HYP B REMARK 800 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO B 11 and HYP B REMARK 800 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP B 12 and ALA B REMARK 800 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP B 12 and ALA B REMARK 800 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU B 14 and HYP B REMARK 800 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP B 15 and GLY B REMARK 800 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO B 17 and HYP B REMARK 800 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP B 18 and GLY B REMARK 800 19 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO B 20 and HYP B REMARK 800 21 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP B 21 and GLY B REMARK 800 22 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO B 23 and HYP B REMARK 800 24 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP B 24 and GLY B REMARK 800 25 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO B 26 and HYP B REMARK 800 27 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO C 2 and HYP C 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP C 3 and GLY C 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO C 5 and HYP C 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP C 6 and GLY C 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO C 8 and HYP C 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP C 9 and GLY C 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO C 11 and HYP C REMARK 800 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP C 12 and ALA C REMARK 800 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU C 14 and HYP C REMARK 800 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU C 14 and HYP C REMARK 800 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP C 15 and GLY C REMARK 800 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO C 17 and HYP C REMARK 800 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP C 18 and GLY C REMARK 800 19 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO C 20 and HYP C REMARK 800 21 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP C 21 and GLY C REMARK 800 22 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO C 23 and HYP C REMARK 800 24 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HYP C 24 and GLY C REMARK 800 25 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PRO C 26 and HYP C REMARK 800 27 DBREF 5Y46 A 1 27 PDB 5Y46 5Y46 1 27 DBREF 5Y46 B 1 27 PDB 5Y46 5Y46 1 27 DBREF 5Y46 C 1 27 PDB 5Y46 5Y46 1 27 SEQRES 1 A 27 GLY PRO HYP GLY PRO HYP GLY PRO HYP GLY PRO HYP ALA SEQRES 2 A 27 LEU HYP GLY PRO HYP GLY PRO HYP GLY PRO HYP GLY PRO SEQRES 3 A 27 HYP SEQRES 1 B 27 GLY PRO HYP GLY PRO HYP GLY PRO HYP GLY PRO HYP ALA SEQRES 2 B 27 LEU HYP GLY PRO HYP GLY PRO HYP GLY PRO HYP GLY PRO SEQRES 3 B 27 HYP SEQRES 1 C 27 GLY PRO HYP GLY PRO HYP GLY PRO HYP GLY PRO HYP ALA SEQRES 2 C 27 LEU HYP GLY PRO HYP GLY PRO HYP GLY PRO HYP GLY PRO SEQRES 3 C 27 HYP HET HYP A 3 8 HET HYP A 6 8 HET HYP A 9 8 HET HYP A 12 8 HET HYP A 15 8 HET HYP A 18 8 HET HYP A 21 8 HET HYP A 24 8 HET HYP A 27 9 HET HYP B 3 8 HET HYP B 6 8 HET HYP B 9 8 HET HYP B 12 16 HET HYP B 15 8 HET HYP B 18 8 HET HYP B 21 8 HET HYP B 24 16 HET HYP B 27 9 HET HYP C 3 8 HET HYP C 6 8 HET HYP C 9 8 HET HYP C 12 8 HET HYP C 15 8 HET HYP C 18 8 HET HYP C 21 8 HET HYP C 24 8 HET HYP C 27 9 HET ZN A 101 1 HET ACT B 101 4 HET ZN B 102 1 HETNAM HYP 4-HYDROXYPROLINE HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETSYN HYP HYDROXYPROLINE FORMUL 1 HYP 27(C5 H9 N O3) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 ACT C2 H3 O2 1- FORMUL 7 HOH *189(H2 O) LINK N GLY A 1 ZN ZN A 101 1555 1555 2.10 LINK O GLY A 1 ZN ZN A 101 1555 1555 2.07 LINK C PRO A 2 N HYP A 3 1555 1555 1.32 LINK C HYP A 3 N GLY A 4 1555 1555 1.32 LINK C PRO A 5 N HYP A 6 1555 1555 1.34 LINK C HYP A 6 N GLY A 7 1555 1555 1.32 LINK C PRO A 8 N HYP A 9 1555 1555 1.32 LINK C HYP A 9 N GLY A 10 1555 1555 1.33 LINK C PRO A 11 N HYP A 12 1555 1555 1.35 LINK C HYP A 12 N ALA A 13 1555 1555 1.33 LINK C ALEU A 14 N HYP A 15 1555 1555 1.30 LINK C BLEU A 14 N HYP A 15 1555 1555 1.37 LINK C HYP A 15 N GLY A 16 1555 1555 1.32 LINK C PRO A 17 N HYP A 18 1555 1555 1.34 LINK C HYP A 18 N GLY A 19 1555 1555 1.32 LINK C PRO A 20 N HYP A 21 1555 1555 1.32 LINK C HYP A 21 N GLY A 22 1555 1555 1.31 LINK C PRO A 23 N HYP A 24 1555 1555 1.33 LINK C HYP A 24 N GLY A 25 1555 1555 1.33 LINK C PRO A 26 N HYP A 27 1555 1555 1.33 LINK N GLY B 1 ZN ZN B 102 1555 1555 2.04 LINK O GLY B 1 ZN ZN B 102 1555 1555 2.23 LINK C PRO B 2 N HYP B 3 1555 1555 1.32 LINK C HYP B 3 N GLY B 4 1555 1555 1.32 LINK C PRO B 5 N HYP B 6 1555 1555 1.33 LINK C HYP B 6 N GLY B 7 1555 1555 1.35 LINK C PRO B 8 N HYP B 9 1555 1555 1.32 LINK C HYP B 9 N GLY B 10 1555 1555 1.33 LINK C PRO B 11 N AHYP B 12 1555 1555 1.34 LINK C PRO B 11 N BHYP B 12 1555 1555 1.35 LINK C AHYP B 12 N ALA B 13 1555 1555 1.32 LINK C BHYP B 12 N ALA B 13 1555 1555 1.34 LINK C LEU B 14 N HYP B 15 1555 1555 1.36 LINK C HYP B 15 N GLY B 16 1555 1555 1.33 LINK C PRO B 17 N HYP B 18 1555 1555 1.33 LINK C HYP B 18 N GLY B 19 1555 1555 1.34 LINK C PRO B 20 N HYP B 21 1555 1555 1.33 LINK C HYP B 21 N GLY B 22 1555 1555 1.32 LINK C APRO B 23 N AHYP B 24 1555 1555 1.34 LINK C BPRO B 23 N BHYP B 24 1555 1555 1.33 LINK C AHYP B 24 N AGLY B 25 1555 1555 1.33 LINK C BHYP B 24 N BGLY B 25 1555 1555 1.33 LINK C PRO B 26 N HYP B 27 1555 1555 1.35 LINK N GLY C 1 ZN ZN B 102 1555 1555 2.06 LINK C PRO C 2 N HYP C 3 1555 1555 1.32 LINK C HYP C 3 N GLY C 4 1555 1555 1.33 LINK C PRO C 5 N HYP C 6 1555 1555 1.34 LINK C HYP C 6 N GLY C 7 1555 1555 1.33 LINK C PRO C 8 N HYP C 9 1555 1555 1.34 LINK C HYP C 9 N GLY C 10 1555 1555 1.34 LINK C PRO C 11 N HYP C 12 1555 1555 1.33 LINK C HYP C 12 N ALA C 13 1555 1555 1.32 LINK C ALEU C 14 N HYP C 15 1555 1555 1.34 LINK C BLEU C 14 N HYP C 15 1555 1555 1.33 LINK C HYP C 15 N GLY C 16 1555 1555 1.32 LINK C PRO C 17 N HYP C 18 1555 1555 1.33 LINK C HYP C 18 N GLY C 19 1555 1555 1.32 LINK C PRO C 20 N HYP C 21 1555 1555 1.34 LINK C HYP C 21 N GLY C 22 1555 1555 1.33 LINK C PRO C 23 N HYP C 24 1555 1555 1.34 LINK C HYP C 24 N GLY C 25 1555 1555 1.32 LINK C PRO C 26 N HYP C 27 1555 1555 1.34 LINK ZN ZN A 101 O HOH A 242 1555 1555 2.04 LINK ZN ZN A 101 O HOH B 239 1555 1555 2.23 LINK ZN ZN A 101 O HOH A 207 1555 1555 1.97 LINK ZN ZN A 101 O HOH A 240 1555 1555 2.16 LINK OXT ACT B 101 ZN ZN B 102 1555 1555 2.00 LINK OXT HYP C 27 ZN ZN B 102 1555 1856 2.07 SITE 1 AC1 5 GLY A 1 HOH A 207 HOH A 240 HOH A 242 SITE 2 AC1 5 HOH B 239 SITE 1 AC2 3 GLY B 1 ZN B 102 GLY C 1 SITE 1 AC3 3 GLY B 1 ACT B 101 GLY C 1 SITE 1 AC4 9 HYP A 3 GLY A 4 GLY B 1 GLY B 4 SITE 2 AC4 9 HOH B 220 HOH B 227 HOH B 231 HOH B 232 SITE 3 AC4 9 PRO C 2 SITE 1 AC5 11 GLY A 4 PRO A 5 PRO B 2 PRO B 5 SITE 2 AC5 11 HOH B 218 HOH B 220 HOH B 227 HOH B 231 SITE 3 AC5 11 HOH B 232 PRO C 2 GLY C 4 SITE 1 AC6 11 HYP A 6 GLY A 7 GLY B 4 GLY B 7 SITE 2 AC6 11 HOH B 206 HOH B 208 HOH B 213 HOH B 234 SITE 3 AC6 11 GLY C 4 PRO C 5 HYP C 27 SITE 1 AC7 12 GLY A 7 PRO A 8 PRO B 5 PRO B 8 SITE 2 AC7 12 HOH B 206 HOH B 207 HOH B 208 HOH B 213 SITE 3 AC7 12 HOH B 234 PRO C 5 GLY C 7 PRO C 8 SITE 1 AC8 11 GLY A 7 HYP A 9 GLY A 10 GLY B 7 SITE 2 AC8 11 GLY B 10 HOH B 221 HOH B 224 HOH B 225 SITE 3 AC8 11 HYP C 3 GLY C 7 PRO C 8 SITE 1 AC9 10 GLY A 10 PRO B 8 PRO B 11 HOH B 210 SITE 2 AC9 10 HOH B 221 HOH B 224 HOH B 225 HYP C 3 SITE 3 AC9 10 PRO C 8 GLY C 10 SITE 1 AD1 11 GLY A 10 HYP A 12 ALA A 13 GLY B 10 SITE 2 AD1 11 ALA B 13 HOH B 203 HOH B 210 HOH B 214 SITE 3 AD1 11 HOH B 236 GLY C 10 PRO C 11 SITE 1 AD2 11 GLY A 10 HYP A 12 ALA A 13 GLY B 10 SITE 2 AD2 11 ALA B 13 HOH B 203 HOH B 210 HOH B 214 SITE 3 AD2 11 HOH B 236 GLY C 10 PRO C 11 SITE 1 AD3 13 ALA A 13 LEU A 14 PRO B 11 LEU B 14 SITE 2 AD3 13 HYP B 15 HOH B 203 HOH B 210 HOH B 214 SITE 3 AD3 13 HOH B 222 HOH B 228 HOH B 236 PRO C 11 SITE 4 AD3 13 HOH C 126 SITE 1 AD4 13 ALA A 13 LEU A 14 PRO B 11 LEU B 14 SITE 2 AD4 13 HYP B 15 HOH B 203 HOH B 210 HOH B 214 SITE 3 AD4 13 HOH B 222 HOH B 228 HOH B 236 PRO C 11 SITE 4 AD4 13 HOH C 126 SITE 1 AD5 11 HYP A 15 GLY A 16 HOH A 206 ALA B 13 SITE 2 AD5 11 GLY B 16 HOH B 217 HOH B 222 HOH B 229 SITE 3 AD5 11 HOH B 237 ALA C 13 LEU C 14 SITE 1 AD6 12 GLY A 16 PRO A 17 ALA B 13 LEU B 14 SITE 2 AD6 12 PRO B 17 HOH B 209 HOH B 217 HOH B 222 SITE 3 AD6 12 HOH B 229 HOH B 237 LEU C 14 GLY C 16 SITE 1 AD7 10 HYP A 18 GLY A 19 HYP A 24 GLY B 16 SITE 2 AD7 10 GLY B 19 HOH B 230 HOH B 238 GLY C 16 SITE 3 AD7 10 PRO C 17 HOH C 116 SITE 1 AD8 11 GLY A 19 PRO A 20 PRO B 17 PRO B 20 SITE 2 AD8 11 HOH B 212 HOH B 230 HOH B 238 PRO C 17 SITE 3 AD8 11 GLY C 19 PRO C 20 HOH C 116 SITE 1 AD9 11 GLY A 19 HYP A 21 GLY A 22 HOH A 215 SITE 2 AD9 11 GLY B 19 GLY B 22 PRO B 26 HOH B 212 SITE 3 AD9 11 HOH B 226 GLY C 19 PRO C 20 SITE 1 AE1 11 GLY A 22 PRO A 23 HOH A 215 PRO B 20 SITE 2 AE1 11 PRO B 23 PRO B 26 HOH B 212 HOH B 216 SITE 3 AE1 11 HOH B 226 PRO C 20 GLY C 22 SITE 1 AE2 11 HYP A 24 GLY A 25 GLY B 22 GLY B 25 SITE 2 AE2 11 HOH B 201 HOH B 202 HOH B 211 HOH B 219 SITE 3 AE2 11 HOH B 233 GLY C 22 PRO C 23 SITE 1 AE3 12 GLY A 25 PRO A 26 PRO B 23 PRO B 26 SITE 2 AE3 12 HOH B 201 HOH B 202 HOH B 204 HOH B 211 SITE 3 AE3 12 HOH B 219 HOH B 233 PRO C 23 GLY C 25 SITE 1 AE4 8 HYP A 27 HYP B 21 GLY B 25 HOH B 205 SITE 2 AE4 8 HOH B 215 HOH B 223 HOH B 240 PRO C 26 SITE 1 AE5 11 GLY A 4 PRO A 5 HYP B 3 GLY B 4 SITE 2 AE5 11 HYP B 9 GLY C 1 GLY C 4 PRO C 8 SITE 3 AE5 11 HOH C 110 HOH C 136 HOH C 137 SITE 1 AE6 12 PRO A 5 GLY A 7 GLY B 4 PRO B 5 SITE 2 AE6 12 HYP B 9 PRO C 2 PRO C 5 PRO C 8 SITE 3 AE6 12 HOH C 110 HOH C 125 HOH C 136 HOH C 137 SITE 1 AE7 10 GLY A 7 PRO A 8 HYP B 6 GLY B 7 SITE 2 AE7 10 GLY C 4 GLY C 7 HOH C 104 HOH C 107 SITE 3 AE7 10 HOH C 119 HOH C 121 SITE 1 AE8 13 PRO A 8 GLY A 10 PRO A 11 GLY B 7 SITE 2 AE8 13 PRO B 8 PRO C 5 PRO C 8 HYP C 9 SITE 3 AE8 13 HOH C 104 HOH C 107 HOH C 119 HOH C 121 SITE 4 AE8 13 HOH C 133 SITE 1 AE9 12 GLY A 10 PRO A 11 GLY B 7 HYP B 9 SITE 2 AE9 12 GLY B 10 HYP C 3 GLY C 7 GLY C 10 SITE 3 AE9 12 HOH C 103 HOH C 105 HOH C 130 HOH C 132 SITE 1 AF1 12 PRO A 11 GLY B 10 PRO B 11 GLY C 7 SITE 2 AF1 12 PRO C 8 PRO C 11 HOH C 103 HOH C 105 SITE 3 AF1 12 HOH C 124 HOH C 128 HOH C 130 HOH C 132 SITE 1 AF2 7 ALA A 13 HYP B 12 GLY C 10 ALA C 13 SITE 2 AF2 7 HOH C 114 HOH C 115 HOH C 126 SITE 1 AF3 9 LEU A 14 GLY A 16 HOH A 209 LEU B 14 SITE 2 AF3 9 PRO C 11 LEU C 14 HOH C 113 HOH C 114 SITE 3 AF3 9 HOH C 115 SITE 1 AF4 13 HYP A 12 GLY A 16 PRO A 17 HYP B 15 SITE 2 AF4 13 GLY B 16 HOH B 222 ALA C 13 GLY C 16 SITE 3 AF4 13 HOH C 102 HOH C 111 HOH C 127 HOH C 134 SITE 4 AF4 13 HOH C 141 SITE 1 AF5 13 HYP A 12 GLY A 16 PRO A 17 HYP B 15 SITE 2 AF5 13 GLY B 16 HOH B 222 ALA C 13 GLY C 16 SITE 3 AF5 13 HOH C 102 HOH C 111 HOH C 127 HOH C 134 SITE 4 AF5 13 HOH C 141 SITE 1 AF6 12 PRO A 17 GLY A 19 PRO A 20 GLY B 16 SITE 2 AF6 12 PRO B 17 LEU C 14 PRO C 17 HOH C 102 SITE 3 AF6 12 HOH C 111 HOH C 118 HOH C 127 HOH C 134 SITE 1 AF7 10 GLY A 19 PRO A 20 HOH A 213 HYP B 18 SITE 2 AF7 10 GLY B 19 GLY C 16 GLY C 19 HOH C 116 SITE 3 AF7 10 HOH C 117 HOH C 129 SITE 1 AF8 11 PRO A 20 GLY A 22 HOH A 213 GLY B 19 SITE 2 AF8 11 PRO B 20 PRO C 17 PRO C 20 HYP C 21 SITE 3 AF8 11 HOH C 116 HOH C 117 HOH C 129 SITE 1 AF9 9 GLY A 22 PRO A 23 GLY B 19 HYP B 21 SITE 2 AF9 9 GLY B 22 GLY C 19 GLY C 22 HOH C 108 SITE 3 AF9 9 HOH C 120 SITE 1 AG1 11 PRO A 23 GLY A 25 PRO A 26 GLY B 22 SITE 2 AG1 11 PRO B 23 GLY C 19 PRO C 20 PRO C 23 SITE 3 AG1 11 HOH C 108 HOH C 120 HOH C 131 SITE 1 AG2 11 HYP A 3 GLY A 25 PRO A 26 HYP B 24 SITE 2 AG2 11 GLY B 25 GLY C 22 GLY C 25 HOH C 109 SITE 3 AG2 11 HOH C 112 HOH C 122 HOH C 123 SITE 1 AG3 11 PRO A 26 HOH A 221 GLY B 25 PRO C 23 SITE 2 AG3 11 PRO C 26 HYP C 27 HOH C 106 HOH C 109 SITE 3 AG3 11 HOH C 112 HOH C 122 HOH C 123 SITE 1 AG4 5 PRO B 5 PRO B 26 GLY C 25 HOH C 101 SITE 2 AG4 5 HOH C 135 CRYST1 20.650 25.290 53.980 90.00 93.06 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.048426 0.000000 0.002589 0.00000 SCALE2 0.000000 0.039541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018552 0.00000