HEADER VIRAL PROTEIN 09-AUG-17 5Y5Q
TITLE CRYSTAL STRUCTURE OF THE WSSV DUTPASE D88N/R158E MUTANT IN COMPLEX
TITLE 2 WITH DUTP
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: WSV112;
COMPND 3 CHAIN: A, B, C;
COMPND 4 FRAGMENT: UNP RESIDUES 1-171;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES;
COMPND 7 OTHER_DETAILS: D88N/R158E MUTANT
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: WHITE SPOT SYNDROME VIRUS (ISOLATE
SOURCE 3 SHRIMP/CHINA/TONGAN/1996);
SOURCE 4 ORGANISM_COMMON: WSSV;
SOURCE 5 ORGANISM_TAXID: 654913;
SOURCE 6 STRAIN: ISOLATE SHRIMP/CHINA/TONGAN/1996;
SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3);
SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET30
KEYWDS DUTPASE, WSSV, PYROPHOSPHATASE, DUTP, VIRAL PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR Q.MA,K.ZANG
REVDAT 4 22-NOV-23 5Y5Q 1 REMARK LINK
REVDAT 3 31-JAN-18 5Y5Q 1 JRNL
REVDAT 2 13-DEC-17 5Y5Q 1 JRNL
REVDAT 1 06-DEC-17 5Y5Q 0
JRNL AUTH K.ZANG,F.LI,Q.MA
JRNL TITL THE DUTPASE OF WHITE SPOT SYNDROME VIRUS ASSEMBLES ITS
JRNL TITL 2 ACTIVE SITES IN A NONCANONICAL MANNER.
JRNL REF J. BIOL. CHEM. V. 293 1088 2018
JRNL REFN ESSN 1083-351X
JRNL PMID 29187596
JRNL DOI 10.1074/JBC.M117.815266
REMARK 2
REMARK 2 RESOLUTION. 1.56 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.2
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.84
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8
REMARK 3 NUMBER OF REFLECTIONS : 71821
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS
REMARK 3 R VALUE (WORKING + TEST SET) : 0.174
REMARK 3 R VALUE (WORKING SET) : 0.173
REMARK 3 FREE R VALUE : 0.192
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060
REMARK 3 FREE R VALUE TEST SET COUNT : 3632
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.60
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.27
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4582
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2220
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4290
REMARK 3 BIN R VALUE (WORKING SET) : 0.2210
REMARK 3 BIN FREE R VALUE : 0.2420
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.37
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 292
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3471
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 87
REMARK 3 SOLVENT ATOMS : 458
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 24.31
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.98
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.96660
REMARK 3 B22 (A**2) : 4.65450
REMARK 3 B33 (A**2) : -3.68800
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.190
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.078
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.075
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.073
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.071
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 3641 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 4952 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1282 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 83 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 544 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3641 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 497 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 4381 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.05
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.99
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.95
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 24.0976 0.9166 -17.9605
REMARK 3 T TENSOR
REMARK 3 T11: -0.0565 T22: -0.0251
REMARK 3 T33: -0.0729 T12: -0.0338
REMARK 3 T13: 0.0163 T23: 0.0386
REMARK 3 L TENSOR
REMARK 3 L11: 0.7502 L22: 0.7062
REMARK 3 L33: 1.3938 L12: -0.0244
REMARK 3 L13: 0.1550 L23: 0.0219
REMARK 3 S TENSOR
REMARK 3 S11: -0.0193 S12: 0.2099 S13: 0.0249
REMARK 3 S21: -0.1288 S22: -0.0621 S23: -0.0853
REMARK 3 S31: -0.1129 S32: 0.2849 S33: 0.0814
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 9.5966 2.0654 -7.2253
REMARK 3 T TENSOR
REMARK 3 T11: -0.0606 T22: -0.0533
REMARK 3 T33: -0.0366 T12: 0.0145
REMARK 3 T13: -0.0176 T23: -0.0094
REMARK 3 L TENSOR
REMARK 3 L11: 0.8012 L22: 0.7324
REMARK 3 L33: 1.5144 L12: -0.1715
REMARK 3 L13: 0.3357 L23: 0.0006
REMARK 3 S TENSOR
REMARK 3 S11: -0.0557 S12: -0.0342 S13: 0.0318
REMARK 3 S21: -0.0317 S22: 0.0031 S23: 0.0687
REMARK 3 S31: -0.1437 S32: -0.1251 S33: 0.0526
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { C|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 11.4942 -11.1542 -16.2169
REMARK 3 T TENSOR
REMARK 3 T11: -0.0231 T22: -0.0407
REMARK 3 T33: -0.0379 T12: -0.0160
REMARK 3 T13: -0.0154 T23: -0.0098
REMARK 3 L TENSOR
REMARK 3 L11: 1.1808 L22: 1.0191
REMARK 3 L33: 2.0188 L12: -0.0052
REMARK 3 L13: 0.6234 L23: -0.4124
REMARK 3 S TENSOR
REMARK 3 S11: 0.0617 S12: 0.0643 S13: -0.1227
REMARK 3 S21: -0.1933 S22: 0.0015 S23: 0.0726
REMARK 3 S31: 0.1704 S32: -0.0276 S33: -0.0632
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5Y5Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-AUG-17.
REMARK 100 THE DEPOSITION ID IS D_1300004708.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 29-DEC-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRF
REMARK 200 BEAMLINE : BL17U1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL
REMARK 200 OPTICS : DYNAMICALLY BENDABLE TOROIDAL
REMARK 200 MIRROR
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC 1.0.4
REMARK 200 DATA SCALING SOFTWARE : AUTOPROC 1.0.4
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71914
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560
REMARK 200 RESOLUTION RANGE LOW (A) : 113.321
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9
REMARK 200 DATA REDUNDANCY : 14.50
REMARK 200 R MERGE (I) : 0.06000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57
REMARK 200 COMPLETENESS FOR SHELL (%) : 78.3
REMARK 200 DATA REDUNDANCY IN SHELL : 13.60
REMARK 200 R MERGE FOR SHELL (I) : 1.13300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5Y5P
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 45.00
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 1500, VAPOR DIFFUSION,
REMARK 280 SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.78700
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.66050
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.76350
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.66050
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.78700
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.76350
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 12020 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 19800 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A -2
REMARK 465 ASN A -1
REMARK 465 ALA A 0
REMARK 465 MET A 1
REMARK 465 ASP A 2
REMARK 465 LYS A 151
REMARK 465 ASP A 152
REMARK 465 ASN A 153
REMARK 465 LYS A 154
REMARK 465 ASN A 155
REMARK 465 GLN A 156
REMARK 465 ALA A 157
REMARK 465 GLU A 158
REMARK 465 SER A 159
REMARK 465 VAL A 160
REMARK 465 ARG A 161
REMARK 465 GLY A 162
REMARK 465 THR A 163
REMARK 465 GLY A 164
REMARK 465 GLY A 165
REMARK 465 PHE A 166
REMARK 465 GLY A 167
REMARK 465 SER A 168
REMARK 465 THR A 169
REMARK 465 ASP A 170
REMARK 465 ASN A 171
REMARK 465 SER B -2
REMARK 465 ASN B -1
REMARK 465 ALA B 0
REMARK 465 MET B 1
REMARK 465 ASP B 2
REMARK 465 GLY B 164
REMARK 465 GLY B 165
REMARK 465 PHE B 166
REMARK 465 GLY B 167
REMARK 465 SER B 168
REMARK 465 THR B 169
REMARK 465 ASP B 170
REMARK 465 ASN B 171
REMARK 465 SER C -2
REMARK 465 ASN C -1
REMARK 465 ALA C 0
REMARK 465 MET C 1
REMARK 465 GLY C 16
REMARK 465 GLU C 17
REMARK 465 GLU C 18
REMARK 465 ASN C 136
REMARK 465 GLU C 137
REMARK 465 THR C 138
REMARK 465 THR C 139
REMARK 465 GLY C 140
REMARK 465 GLU C 141
REMARK 465 LYS C 151
REMARK 465 ASP C 152
REMARK 465 ASN C 153
REMARK 465 LYS C 154
REMARK 465 ASN C 155
REMARK 465 GLN C 156
REMARK 465 ALA C 157
REMARK 465 GLU C 158
REMARK 465 SER C 159
REMARK 465 VAL C 160
REMARK 465 ARG C 161
REMARK 465 GLY C 162
REMARK 465 THR C 163
REMARK 465 GLY C 164
REMARK 465 GLY C 165
REMARK 465 PHE C 166
REMARK 465 GLY C 167
REMARK 465 SER C 168
REMARK 465 THR C 169
REMARK 465 ASP C 170
REMARK 465 ASN C 171
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG B 201 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 DUT A 501 O1A
REMARK 620 2 DUT A 501 O1B 87.9
REMARK 620 3 HOH A 601 O 90.5 90.2
REMARK 620 4 HOH A 712 O 93.2 178.4 88.7
REMARK 620 5 HOH B 306 O 90.4 90.8 178.7 90.3
REMARK 620 6 HOH B 369 O 173.9 86.9 92.7 92.1 86.6
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 502 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HOH A 604 O
REMARK 620 2 HOH A 618 O 85.5
REMARK 620 3 DUT C 202 O1G 173.2 90.3
REMARK 620 4 DUT C 202 O1A 94.7 179.7 89.5
REMARK 620 5 DUT C 202 O1B 90.4 89.8 84.3 90.4
REMARK 620 6 HOH C 385 O 90.1 88.9 95.2 91.0 178.6
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG C 201 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 DUT B 202 O1A
REMARK 620 2 DUT B 202 O1B 90.2
REMARK 620 3 HOH B 304 O 90.0 93.3
REMARK 620 4 HOH B 411 O 91.4 178.3 87.2
REMARK 620 5 HOH C 305 O 91.3 90.8 175.7 88.7
REMARK 620 6 HOH C 344 O 178.4 90.0 91.5 88.3 87.2
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue DUT A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue DUT B 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue DUT C 202
DBREF 5Y5Q A 1 171 UNP Q77J78 Q77J78_WSSVS 1 171
DBREF 5Y5Q B 1 171 UNP Q77J78 Q77J78_WSSVS 1 171
DBREF 5Y5Q C 1 171 UNP Q77J78 Q77J78_WSSVS 1 171
SEQADV 5Y5Q SER A -2 UNP Q77J78 EXPRESSION TAG
SEQADV 5Y5Q ASN A -1 UNP Q77J78 EXPRESSION TAG
SEQADV 5Y5Q ALA A 0 UNP Q77J78 EXPRESSION TAG
SEQADV 5Y5Q ASN A 88 UNP Q77J78 ASP 88 ENGINEERED MUTATION
SEQADV 5Y5Q GLU A 158 UNP Q77J78 ARG 158 ENGINEERED MUTATION
SEQADV 5Y5Q SER B -2 UNP Q77J78 EXPRESSION TAG
SEQADV 5Y5Q ASN B -1 UNP Q77J78 EXPRESSION TAG
SEQADV 5Y5Q ALA B 0 UNP Q77J78 EXPRESSION TAG
SEQADV 5Y5Q ASN B 88 UNP Q77J78 ASP 88 ENGINEERED MUTATION
SEQADV 5Y5Q GLU B 158 UNP Q77J78 ARG 158 ENGINEERED MUTATION
SEQADV 5Y5Q SER C -2 UNP Q77J78 EXPRESSION TAG
SEQADV 5Y5Q ASN C -1 UNP Q77J78 EXPRESSION TAG
SEQADV 5Y5Q ALA C 0 UNP Q77J78 EXPRESSION TAG
SEQADV 5Y5Q ASN C 88 UNP Q77J78 ASP 88 ENGINEERED MUTATION
SEQADV 5Y5Q GLU C 158 UNP Q77J78 ARG 158 ENGINEERED MUTATION
SEQRES 1 A 174 SER ASN ALA MET ASP SER SER ALA SER VAL VAL PHE MET
SEQRES 2 A 174 ARG PHE ALA PRO PRO GLY GLU GLU THR ALA LEU PRO PRO
SEQRES 3 A 174 ARG ARG ALA THR PRO GLY SER VAL ALA TYR ASP LEU PHE
SEQRES 4 A 174 PRO SER GLU GLU MET ASP ILE GLU PRO MET GLY LEU ALA
SEQRES 5 A 174 LYS ILE SER THR GLY TYR GLY ILE ASP LYS PHE PRO ASP
SEQRES 6 A 174 GLY CYS TYR GLY GLN ILE VAL SER ARG SER GLY MET THR
SEQRES 7 A 174 TRP LYS ASN ASN THR SER VAL PRO THR GLY THR ILE ASN
SEQRES 8 A 174 VAL ASP TYR ARG GLY GLU LEU LYS VAL ILE LEU ARG ASN
SEQRES 9 A 174 HIS SER ALA GLU LYS SER VAL PRO ILE ARG LYS GLY THR
SEQRES 10 A 174 SER ILE ALA GLN LEU ILE PHE LEU ARG TYR CYS ASP VAL
SEQRES 11 A 174 GLU GLU GLU GLN ILE VAL TYR ILE ASN GLU THR THR GLY
SEQRES 12 A 174 GLU ARG THR ILE ILE ASP SER SER SER LYS LYS ASP ASN
SEQRES 13 A 174 LYS ASN GLN ALA GLU SER VAL ARG GLY THR GLY GLY PHE
SEQRES 14 A 174 GLY SER THR ASP ASN
SEQRES 1 B 174 SER ASN ALA MET ASP SER SER ALA SER VAL VAL PHE MET
SEQRES 2 B 174 ARG PHE ALA PRO PRO GLY GLU GLU THR ALA LEU PRO PRO
SEQRES 3 B 174 ARG ARG ALA THR PRO GLY SER VAL ALA TYR ASP LEU PHE
SEQRES 4 B 174 PRO SER GLU GLU MET ASP ILE GLU PRO MET GLY LEU ALA
SEQRES 5 B 174 LYS ILE SER THR GLY TYR GLY ILE ASP LYS PHE PRO ASP
SEQRES 6 B 174 GLY CYS TYR GLY GLN ILE VAL SER ARG SER GLY MET THR
SEQRES 7 B 174 TRP LYS ASN ASN THR SER VAL PRO THR GLY THR ILE ASN
SEQRES 8 B 174 VAL ASP TYR ARG GLY GLU LEU LYS VAL ILE LEU ARG ASN
SEQRES 9 B 174 HIS SER ALA GLU LYS SER VAL PRO ILE ARG LYS GLY THR
SEQRES 10 B 174 SER ILE ALA GLN LEU ILE PHE LEU ARG TYR CYS ASP VAL
SEQRES 11 B 174 GLU GLU GLU GLN ILE VAL TYR ILE ASN GLU THR THR GLY
SEQRES 12 B 174 GLU ARG THR ILE ILE ASP SER SER SER LYS LYS ASP ASN
SEQRES 13 B 174 LYS ASN GLN ALA GLU SER VAL ARG GLY THR GLY GLY PHE
SEQRES 14 B 174 GLY SER THR ASP ASN
SEQRES 1 C 174 SER ASN ALA MET ASP SER SER ALA SER VAL VAL PHE MET
SEQRES 2 C 174 ARG PHE ALA PRO PRO GLY GLU GLU THR ALA LEU PRO PRO
SEQRES 3 C 174 ARG ARG ALA THR PRO GLY SER VAL ALA TYR ASP LEU PHE
SEQRES 4 C 174 PRO SER GLU GLU MET ASP ILE GLU PRO MET GLY LEU ALA
SEQRES 5 C 174 LYS ILE SER THR GLY TYR GLY ILE ASP LYS PHE PRO ASP
SEQRES 6 C 174 GLY CYS TYR GLY GLN ILE VAL SER ARG SER GLY MET THR
SEQRES 7 C 174 TRP LYS ASN ASN THR SER VAL PRO THR GLY THR ILE ASN
SEQRES 8 C 174 VAL ASP TYR ARG GLY GLU LEU LYS VAL ILE LEU ARG ASN
SEQRES 9 C 174 HIS SER ALA GLU LYS SER VAL PRO ILE ARG LYS GLY THR
SEQRES 10 C 174 SER ILE ALA GLN LEU ILE PHE LEU ARG TYR CYS ASP VAL
SEQRES 11 C 174 GLU GLU GLU GLN ILE VAL TYR ILE ASN GLU THR THR GLY
SEQRES 12 C 174 GLU ARG THR ILE ILE ASP SER SER SER LYS LYS ASP ASN
SEQRES 13 C 174 LYS ASN GLN ALA GLU SER VAL ARG GLY THR GLY GLY PHE
SEQRES 14 C 174 GLY SER THR ASP ASN
HET DUT A 501 28
HET MG A 502 1
HET MG B 201 1
HET DUT B 202 28
HET MG C 201 1
HET DUT C 202 29
HETNAM DUT DEOXYURIDINE-5'-TRIPHOSPHATE
HETNAM MG MAGNESIUM ION
FORMUL 4 DUT 3(C9 H15 N2 O14 P3)
FORMUL 5 MG 3(MG 2+)
FORMUL 10 HOH *458(H2 O)
HELIX 1 AA1 ARG A 71 ASN A 79 1 9
HELIX 2 AA2 ARG B 71 ASN B 79 1 9
HELIX 3 AA3 ARG C 71 ASN C 79 1 9
SHEET 1 AA1 4 TYR A 55 LYS A 59 0
SHEET 2 AA1 4 SER A 6 ARG A 11 -1 N MET A 10 O GLY A 56
SHEET 3 AA1 4 GLU C 129 TYR C 134 1 O GLN C 131 N PHE A 9
SHEET 4 AA1 4 THR C 143 SER C 149 -1 O ILE C 145 N ILE C 132
SHEET 1 AA2 4 TYR A 33 LEU A 35 0
SHEET 2 AA2 4 ALA A 117 ARG A 123 -1 O ALA A 117 N LEU A 35
SHEET 3 AA2 4 CYS A 64 VAL A 69 -1 N VAL A 69 O GLN A 118
SHEET 4 AA2 4 THR A 86 ILE A 87 -1 O ILE A 87 N GLY A 66
SHEET 1 AA3 2 MET A 41 ILE A 43 0
SHEET 2 AA3 2 VAL A 108 ILE A 110 -1 O ILE A 110 N MET A 41
SHEET 1 AA4 3 LEU A 48 SER A 52 0
SHEET 2 AA4 3 LYS A 96 ASN A 101 -1 O VAL A 97 N ILE A 51
SHEET 3 AA4 3 THR A 80 SER A 81 -1 N SER A 81 O ARG A 100
SHEET 1 AA5 4 ARG A 142 SER A 149 0
SHEET 2 AA5 4 GLU A 129 ILE A 135 -1 N ILE A 132 O ILE A 145
SHEET 3 AA5 4 SER B 6 ARG B 11 1 O PHE B 9 N GLN A 131
SHEET 4 AA5 4 TYR B 55 LYS B 59 -1 O GLY B 56 N MET B 10
SHEET 1 AA6 4 TYR B 33 LEU B 35 0
SHEET 2 AA6 4 ALA B 117 ARG B 123 -1 O ALA B 117 N LEU B 35
SHEET 3 AA6 4 CYS B 64 VAL B 69 -1 N VAL B 69 O GLN B 118
SHEET 4 AA6 4 THR B 86 ILE B 87 -1 O ILE B 87 N GLY B 66
SHEET 1 AA7 2 MET B 41 ILE B 43 0
SHEET 2 AA7 2 VAL B 108 ILE B 110 -1 O ILE B 110 N MET B 41
SHEET 1 AA8 3 LEU B 48 SER B 52 0
SHEET 2 AA8 3 LYS B 96 ASN B 101 -1 O VAL B 97 N ILE B 51
SHEET 3 AA8 3 THR B 80 SER B 81 -1 N SER B 81 O ARG B 100
SHEET 1 AA9 4 ARG B 142 SER B 149 0
SHEET 2 AA9 4 GLU B 129 ILE B 135 -1 N ILE B 132 O ILE B 145
SHEET 3 AA9 4 SER C 6 ARG C 11 1 O PHE C 9 N GLN B 131
SHEET 4 AA9 4 TYR C 55 LYS C 59 -1 O GLY C 56 N MET C 10
SHEET 1 AB1 4 TYR C 33 LEU C 35 0
SHEET 2 AB1 4 ALA C 117 ARG C 123 -1 O LEU C 119 N TYR C 33
SHEET 3 AB1 4 CYS C 64 VAL C 69 -1 N VAL C 69 O GLN C 118
SHEET 4 AB1 4 THR C 86 ILE C 87 -1 O ILE C 87 N GLY C 66
SHEET 1 AB2 2 MET C 41 ILE C 43 0
SHEET 2 AB2 2 VAL C 108 ILE C 110 -1 O ILE C 110 N MET C 41
SHEET 1 AB3 3 LEU C 48 SER C 52 0
SHEET 2 AB3 3 LYS C 96 ASN C 101 -1 O VAL C 97 N ILE C 51
SHEET 3 AB3 3 THR C 80 SER C 81 -1 N SER C 81 O ARG C 100
LINK O1A DUT A 501 MG MG B 201 1555 1555 2.11
LINK O1B DUT A 501 MG MG B 201 1555 1555 2.08
LINK MG MG A 502 O HOH A 604 1555 1555 2.01
LINK MG MG A 502 O HOH A 618 1555 1555 2.08
LINK MG MG A 502 O1G DUT C 202 1555 1555 2.21
LINK MG MG A 502 O1A DUT C 202 1555 1555 2.09
LINK MG MG A 502 O1B DUT C 202 1555 1555 2.00
LINK MG MG A 502 O HOH C 385 1555 1555 2.05
LINK O HOH A 601 MG MG B 201 1555 1555 2.06
LINK O HOH A 712 MG MG B 201 1555 1555 2.02
LINK MG MG B 201 O HOH B 306 1555 1555 2.07
LINK MG MG B 201 O HOH B 369 1555 1555 2.08
LINK O1A DUT B 202 MG MG C 201 1555 1555 2.06
LINK O1B DUT B 202 MG MG C 201 1555 1555 2.04
LINK O HOH B 304 MG MG C 201 1555 1555 1.99
LINK O HOH B 411 MG MG C 201 1555 1555 2.12
LINK MG MG C 201 O HOH C 305 1555 1555 2.06
LINK MG MG C 201 O HOH C 344 1555 1555 2.04
SITE 1 AC1 25 THR A 84 GLY A 85 THR A 86 ILE A 87
SITE 2 AC1 25 ASN A 88 TYR A 91 LYS A 96 HOH A 601
SITE 3 AC1 25 HOH A 611 HOH A 616 HOH A 632 HOH A 634
SITE 4 AC1 25 HOH A 639 HOH A 676 HOH A 690 HOH A 710
SITE 5 AC1 25 HOH A 712 ARG B 71 SER B 72 GLY B 73
SITE 6 AC1 25 GLN B 118 MG B 201 HOH B 306 HOH B 368
SITE 7 AC1 25 HOH B 369
SITE 1 AC2 4 HOH A 604 HOH A 618 DUT C 202 HOH C 385
SITE 1 AC3 5 DUT A 501 HOH A 601 HOH A 712 HOH B 306
SITE 2 AC3 5 HOH B 369
SITE 1 AC4 25 THR B 84 GLY B 85 THR B 86 ILE B 87
SITE 2 AC4 25 ASN B 88 TYR B 91 LYS B 96 HOH B 304
SITE 3 AC4 25 HOH B 305 HOH B 309 HOH B 319 HOH B 320
SITE 4 AC4 25 HOH B 334 HOH B 335 HOH B 346 HOH B 398
SITE 5 AC4 25 HOH B 411 HOH B 420 ARG C 71 SER C 72
SITE 6 AC4 25 GLY C 73 GLN C 118 MG C 201 HOH C 305
SITE 7 AC4 25 HOH C 344
SITE 1 AC5 5 DUT B 202 HOH B 304 HOH B 411 HOH C 305
SITE 2 AC5 5 HOH C 344
SITE 1 AC6 23 ARG A 71 SER A 72 GLY A 73 GLN A 118
SITE 2 AC6 23 MG A 502 HOH A 604 HOH A 618 HOH A 641
SITE 3 AC6 23 HOH A 681 THR C 84 GLY C 85 THR C 86
SITE 4 AC6 23 ILE C 87 ASN C 88 TYR C 91 LYS C 96
SITE 5 AC6 23 HOH C 307 HOH C 308 HOH C 313 HOH C 337
SITE 6 AC6 23 HOH C 375 HOH C 381 HOH C 385
CRYST1 59.574 75.527 113.321 90.00 90.00 90.00 P 21 21 21 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.016786 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013240 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008824 0.00000