HEADER CARBOHYDRATE 15-AUG-17 5Y6T TITLE CRYSTAL STRUCTURE OF ENDO-1,4-BETA-MANNANASE FROM EISENIA FETIDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-1,4-BETA-MANNANASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EISENIA FETIDA; SOURCE 3 ORGANISM_TAXID: 6396; SOURCE 4 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS GS115; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 644223; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS COLD ADAPTATION, GH5 FAMILY, CARBOHYDRATE EXPDTA X-RAY DIFFRACTION AUTHOR Y.HIRANO,M.UEDA,T.TAMADA REVDAT 3 22-NOV-23 5Y6T 1 REMARK REVDAT 2 25-DEC-19 5Y6T 1 JRNL REVDAT 1 27-JUN-18 5Y6T 0 JRNL AUTH M.UEDA,Y.HIRANO,H.FUKUHARA,Y.NAKA,M.NAKAZAWA,T.SAKAMOTO, JRNL AUTH 2 Y.OGATA,T.TAMADA JRNL TITL GENE CLONING, EXPRESSION, AND X-RAY CRYSTALLOGRAPHIC JRNL TITL 2 ANALYSIS OF A BETA-MANNANASE FROM EISENIA FETIDA. JRNL REF ENZYME.MICROB.TECHNOL. V. 117 15 2018 JRNL REFN ISSN 0141-0229 JRNL PMID 30037547 JRNL DOI 10.1016/J.ENZMICTEC.2018.05.014 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 31789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1711 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2275 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.79000 REMARK 3 B33 (A**2) : 0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.956 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2995 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2685 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4101 ; 1.903 ; 1.922 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6167 ; 1.008 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 397 ; 7.514 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;37.406 ;25.215 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 459 ;11.797 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;22.852 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3642 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 765 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1491 ; 1.724 ; 2.254 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1489 ; 1.724 ; 2.252 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1871 ; 2.323 ; 3.374 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1872 ; 2.323 ; 3.377 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1504 ; 2.349 ; 2.437 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1505 ; 2.348 ; 2.437 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2212 ; 3.351 ; 3.583 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3755 ; 4.602 ;19.132 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3676 ; 4.464 ;18.851 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y6T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004767. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33115 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 55.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2C0H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M AMMONIUM CITRATE, 15%(V/V) ISO REMARK 280 -PROPANOL, 0.1 M TRIS-HCL PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.06500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.32700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.73050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.32700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.06500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.73050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 13 REMARK 465 ALA A 14 REMARK 465 PHE A 15 REMARK 465 GLU A 16 REMARK 465 LEU A 378 REMARK 465 GLU A 379 REMARK 465 GLN A 380 REMARK 465 LYS A 381 REMARK 465 LEU A 382 REMARK 465 ILE A 383 REMARK 465 SER A 384 REMARK 465 GLU A 385 REMARK 465 GLU A 386 REMARK 465 ASP A 387 REMARK 465 LEU A 388 REMARK 465 ASN A 389 REMARK 465 SER A 390 REMARK 465 ALA A 391 REMARK 465 VAL A 392 REMARK 465 ASP A 393 REMARK 465 HIS A 394 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 24 OD1 ASP A 209 3554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 258 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 363 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 -137.80 60.92 REMARK 500 GLN A 44 -64.52 -105.89 REMARK 500 CYS A 58 -43.52 -140.54 REMARK 500 VAL A 82 -81.30 -118.50 REMARK 500 CYS A 84 -111.28 63.84 REMARK 500 ALA A 157 -61.60 -120.34 REMARK 500 PRO A 232 2.37 -68.75 REMARK 500 ASN A 364 70.48 -160.10 REMARK 500 ALA A 368 -138.58 -120.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 29 ASN A 30 -113.82 REMARK 500 GLY A 31 GLU A 32 -140.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 402 DBREF 5Y6T A 13 399 PDB 5Y6T 5Y6T 13 399 SEQRES 1 A 387 GLU ALA PHE GLU GLN GLN PHE LEU ASP VAL GLN ASN GLY SEQRES 2 A 387 GLN LEU ARG LEU ASN GLY GLU LYS VAL PHE MET SER GLY SEQRES 3 A 387 MET ASN ILE ALA TRP GLN ASN TYR GLY ARG ASP PHE GLY SEQRES 4 A 387 ASN GLY GLN TYR ASP CYS CYS THR GLY ASN ALA LEU GLU SEQRES 5 A 387 ASP TYR ILE VAL ARG ILE LYS ALA GLU GLY GLY ASN SER SEQRES 6 A 387 LEU ARG ILE TRP VAL HIS CYS ASP GLY GLY TYR THR PRO SEQRES 7 A 387 GLU PHE ASP GLY ASN GLY TYR VAL VAL GLY THR ASP ALA SEQRES 8 A 387 GLN ASN THR MET THR SER ASP LEU ALA GLN PHE LEU ASP SEQRES 9 A 387 VAL ALA TYR ALA ASN ASN VAL LEU VAL PHE ILE VAL LEU SEQRES 10 A 387 TRP ASN GLY ALA THR THR PRO THR SER ARG TYR ARG ASP SEQRES 11 A 387 LEU ILE TYR ASP ASP SER LYS LEU GLN THR TYR ILE ASP SEQRES 12 A 387 GLN ALA LEU VAL PRO MET VAL SER ALA LEU SER GLY LYS SEQRES 13 A 387 VAL ALA LEU GLY GLY TRP GLU VAL MET ASN GLU PRO GLU SEQRES 14 A 387 GLY ILE VAL SER ALA GLY VAL SER ASP GLY ASN PRO CYS SEQRES 15 A 387 PHE ASP THR GLN PRO LEU ALA GLY SER GLY ALA GLY TRP SEQRES 16 A 387 ALA ASP SER ILE PRO MET GLN ARG LEU GLN SER PHE ILE SEQRES 17 A 387 ASN LYS GLN THR ALA ALA ILE LYS ARG ALA ASP PRO LYS SEQRES 18 A 387 VAL ILE VAL THR LEU GLY SER TRP SER GLU ARG ALA GLN SEQRES 19 A 387 THR ASP GLN PHE GLY TRP ARG ASN TYR TYR THR ASP ASN SEQRES 20 A 387 CYS LEU ILE ASP ALA GLY GLY ASP SER LEU GLY VAL ILE SEQRES 21 A 387 ASP PHE TYR GLN MET HIS THR TYR ALA TRP GLU GLY ALA SEQRES 22 A 387 TYR THR SER SER SER PRO LEU LEU VAL PRO ASN SER GLN SEQRES 23 A 387 TYR ASN LEU ASP LYS PRO ASN ASN ILE GLY GLU PHE SER SEQRES 24 A 387 GLN SER GLY GLY ASP GLY ARG SER ILE THR ASP GLN PHE SEQRES 25 A 387 ASP TRP ALA TYR THR GLN GLY TYR CYS GLY ALA TRP SER SEQRES 26 A 387 TRP GLN ALA ASN GLY GLY GLY ASP ASN ALA ASP SER PHE SEQRES 27 A 387 ALA THR GLN ALA GLN GLY LEU ASN HIS LEU ARG GLY ARG SEQRES 28 A 387 ASN ASP GLN ASN ALA GLY GLY ARG ILE ASP ILE ILE LEU SEQRES 29 A 387 GLN LEU GLU GLN LYS LEU ILE SER GLU GLU ASP LEU ASN SEQRES 30 A 387 SER ALA VAL ASP HIS HIS HIS HIS HIS HIS HET TRS A 401 8 HET IPA A 402 4 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM IPA ISOPROPYL ALCOHOL HETSYN TRS TRIS BUFFER HETSYN IPA 2-PROPANOL FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 IPA C3 H8 O FORMUL 4 HOH *236(H2 O) HELIX 1 AA1 GLY A 53 CYS A 58 1 6 HELIX 2 AA2 THR A 59 GLU A 73 1 15 HELIX 3 AA3 THR A 106 ASN A 121 1 16 HELIX 4 AA4 THR A 137 ASP A 146 1 10 HELIX 5 AA5 ASP A 146 ALA A 157 1 12 HELIX 6 AA6 ALA A 157 LEU A 165 1 9 HELIX 7 AA7 PRO A 180 VAL A 184 5 5 HELIX 8 AA8 ASN A 192 ASP A 196 5 5 HELIX 9 AA9 THR A 197 ALA A 201 5 5 HELIX 10 AB1 PRO A 212 ASP A 231 1 20 HELIX 11 AB2 SER A 242 GLN A 246 5 5 HELIX 12 AB3 THR A 257 GLY A 266 1 10 HELIX 13 AB4 PRO A 295 ASN A 300 5 6 HELIX 14 AB5 SER A 319 GLN A 330 1 12 HELIX 15 AB6 SER A 349 ARG A 361 1 13 SHEET 1 AA1 3 ASP A 21 GLN A 23 0 SHEET 2 AA1 3 GLN A 26 LEU A 29 -1 O ARG A 28 N ASP A 21 SHEET 3 AA1 3 GLU A 32 LYS A 33 -1 O GLU A 32 N LEU A 29 SHEET 1 AA2 9 MET A 36 ASN A 40 0 SHEET 2 AA2 9 SER A 77 CYS A 84 1 O ARG A 79 N MET A 39 SHEET 3 AA2 9 LEU A 124 ASN A 131 1 O VAL A 128 N ILE A 80 SHEET 4 AA2 9 LEU A 171 ASN A 178 1 O ASN A 178 N TRP A 130 SHEET 5 AA2 9 ILE A 235 SER A 240 1 O THR A 237 N TRP A 174 SHEET 6 AA2 9 PHE A 274 HIS A 278 1 O GLN A 276 N SER A 240 SHEET 7 AA2 9 ASN A 305 GLU A 309 1 O ASN A 306 N TYR A 275 SHEET 8 AA2 9 GLY A 334 SER A 337 1 O GLY A 334 N ILE A 307 SHEET 9 AA2 9 MET A 36 ASN A 40 1 N ASN A 40 O SER A 337 SHEET 1 AA3 2 GLU A 91 PHE A 92 0 SHEET 2 AA3 2 VAL A 98 GLY A 100 -1 O VAL A 99 N GLU A 91 SHEET 1 AA4 2 ASN A 364 ASP A 365 0 SHEET 2 AA4 2 GLY A 370 ARG A 371 -1 N GLY A 370 O ASP A 365 SSBOND 1 CYS A 57 CYS A 58 1555 1555 2.08 SSBOND 2 CYS A 194 CYS A 260 1555 1555 2.07 CISPEP 1 ILE A 41 ALA A 42 0 -22.06 CISPEP 2 THR A 89 PRO A 90 0 -8.34 CISPEP 3 TRP A 338 GLN A 339 0 -21.03 SITE 1 AC1 9 TRP A 81 ALA A 133 ASN A 178 GLU A 179 SITE 2 AC1 9 TYR A 280 GLU A 309 TRP A 338 IPA A 402 SITE 3 AC1 9 HOH A 549 SITE 1 AC2 6 TRP A 43 TYR A 46 ASN A 131 ALA A 133 SITE 2 AC2 6 THR A 134 TRS A 401 CRYST1 50.130 69.461 86.654 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019948 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014397 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011540 0.00000