HEADER TRANSFERASE/RNA 15-AUG-17 5Y6Z TITLE CRYSTAL STRUCTURE OF THE COXSACKIEVIRUS A16 POLYMERASE ELONGATION TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A, E; COMPND 4 FRAGMENT: UNP RESIDUES 1732-2193; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TEMPLATE RNA (33-MER); COMPND 8 CHAIN: B, F; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: PRODUCT RNA (14-MER); COMPND 12 CHAIN: C, G; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COXSACKIEVIRUS A16; SOURCE 3 ORGANISM_TAXID: 31704; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PCG1; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET26; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS POLYMERASE, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.BI,B.SHU,P.GONG REVDAT 3 22-NOV-23 5Y6Z 1 REMARK REVDAT 2 17-JAN-18 5Y6Z 1 JRNL REVDAT 1 27-DEC-17 5Y6Z 0 JRNL AUTH P.BI,B.SHU,P.GONG JRNL TITL CRYSTAL STRUCTURE OF THE COXSACKIEVIRUS A16 RNA-DEPENDENT JRNL TITL 2 RNA POLYMERASE ELONGATION COMPLEX REVEALS NOVEL FEATURES IN JRNL TITL 3 MOTIF A DYNAMICS JRNL REF VIROL SIN V. 32 548 2017 JRNL REFN ISSN 1995-820X JRNL PMID 29164396 JRNL DOI 10.1007/S12250-017-4066-8 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 56421 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.8314 - 6.7674 0.96 2633 100 0.2230 0.2328 REMARK 3 2 6.7674 - 5.3792 0.99 2692 130 0.2171 0.2547 REMARK 3 3 5.3792 - 4.7014 0.99 2651 148 0.1779 0.2127 REMARK 3 4 4.7014 - 4.2726 0.99 2653 143 0.1753 0.2068 REMARK 3 5 4.2726 - 3.9669 0.99 2746 104 0.1766 0.1924 REMARK 3 6 3.9669 - 3.7334 0.99 2666 137 0.1913 0.2442 REMARK 3 7 3.7334 - 3.5466 0.99 2688 144 0.2054 0.2162 REMARK 3 8 3.5466 - 3.3924 0.99 2667 170 0.2163 0.2869 REMARK 3 9 3.3924 - 3.2619 0.99 2659 141 0.2166 0.2746 REMARK 3 10 3.2619 - 3.1495 0.99 2643 152 0.2298 0.2663 REMARK 3 11 3.1495 - 3.0510 0.99 2720 156 0.2433 0.3181 REMARK 3 12 3.0510 - 2.9639 1.00 2666 158 0.2430 0.2670 REMARK 3 13 2.9639 - 2.8859 0.99 2694 135 0.2629 0.2771 REMARK 3 14 2.8859 - 2.8155 1.00 2691 137 0.2609 0.3104 REMARK 3 15 2.8155 - 2.7516 1.00 2732 77 0.2668 0.3408 REMARK 3 16 2.7516 - 2.6930 1.00 2706 184 0.2719 0.3447 REMARK 3 17 2.6930 - 2.6392 0.99 2697 123 0.2749 0.3366 REMARK 3 18 2.6392 - 2.5894 0.99 2629 154 0.2836 0.4120 REMARK 3 19 2.5894 - 2.5432 1.00 2711 141 0.2957 0.3036 REMARK 3 20 2.5432 - 2.5001 0.99 2711 132 0.3096 0.3556 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 8825 REMARK 3 ANGLE : 0.985 12249 REMARK 3 CHIRALITY : 0.050 1394 REMARK 3 PLANARITY : 0.007 1353 REMARK 3 DIHEDRAL : 16.843 5075 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y6Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004777. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.9.9.4D REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.9.9.4D REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56671 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 46.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 2.930 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.95 REMARK 200 R MERGE FOR SHELL (I) : 0.37200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3OL6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM DIHYDROGEN PHOSPHATE, PH 8.5, REMARK 280 EVAPORATION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.83733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.67467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 358 REMARK 465 ASP A 359 REMARK 465 LYS A 360 REMARK 465 SER A 361 REMARK 465 PRO A 362 REMARK 465 HIS A 463 REMARK 465 HIS A 464 REMARK 465 HIS A 465 REMARK 465 HIS A 466 REMARK 465 HIS A 467 REMARK 465 HIS A 468 REMARK 465 G B 581 REMARK 465 G B 582 REMARK 465 G B 583 REMARK 465 A B 584 REMARK 465 G B 585 REMARK 465 A B 586 REMARK 465 U B 587 REMARK 465 G B 588 REMARK 465 A B 589 REMARK 465 A B 590 REMARK 465 A B 591 REMARK 465 G B 592 REMARK 465 U B 593 REMARK 465 C B 594 REMARK 465 U B 595 REMARK 465 C B 596 REMARK 465 A B 612 REMARK 465 A B 613 REMARK 465 U C 688 REMARK 465 G C 689 REMARK 465 ALA E 358 REMARK 465 ASP E 359 REMARK 465 HIS E 463 REMARK 465 HIS E 464 REMARK 465 HIS E 465 REMARK 465 HIS E 466 REMARK 465 HIS E 467 REMARK 465 HIS E 468 REMARK 465 G F 581 REMARK 465 A F 584 REMARK 465 G F 585 REMARK 465 A F 586 REMARK 465 U F 587 REMARK 465 G F 588 REMARK 465 A F 589 REMARK 465 A F 590 REMARK 465 A F 591 REMARK 465 G F 592 REMARK 465 U F 593 REMARK 465 C F 594 REMARK 465 U F 595 REMARK 465 C F 596 REMARK 465 C F 597 REMARK 465 U G 688 REMARK 465 G G 689 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 ASP A 166 CG OD1 OD2 REMARK 470 SER A 235 OG REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 GLU A 261 CG CD OE1 OE2 REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 CYS A 363 SG REMARK 470 PHE A 364 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 370 CG CD OE1 OE2 REMARK 470 ARG A 396 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 409 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 10 CG CD CE NZ REMARK 470 GLU E 11 CG CD OE1 OE2 REMARK 470 ARG E 22 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 24 CG CD CE NZ REMARK 470 LYS E 46 CG CD CE NZ REMARK 470 ASP E 166 CG OD1 OD2 REMARK 470 SER E 235 OG REMARK 470 GLU E 261 CG CD OE1 OE2 REMARK 470 ASN E 278 CG OD1 ND2 REMARK 470 LYS E 315 CG CD CE NZ REMARK 470 LEU E 342 CG CD1 CD2 REMARK 470 LYS E 346 CG CD CE NZ REMARK 470 LYS E 349 CG CD CE NZ REMARK 470 THR E 356 OG1 CG2 REMARK 470 LYS E 360 CG CD CE NZ REMARK 470 GLU E 366 CG CD OE1 OE2 REMARK 470 ARG E 396 CG CD NE CZ NH1 NH2 REMARK 470 A F 613 C5' C4' O4' C3' O3' C2' O2' REMARK 470 A F 613 C1' N9 C8 N7 C5 C6 N6 REMARK 470 A F 613 N1 C2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG E 128 O HOH E 601 2.03 REMARK 500 O HOH G 902 O HOH G 903 2.08 REMARK 500 O2' G B 610 O HOH B 801 2.13 REMARK 500 O ALA E 345 O HOH E 602 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 66 -102.72 -119.10 REMARK 500 ASN A 201 53.11 -140.16 REMARK 500 ARG A 277 -104.87 61.68 REMARK 500 ASP A 407 119.26 -175.29 REMARK 500 THR E 66 -100.26 -118.22 REMARK 500 SER E 164 163.19 -48.78 REMARK 500 ASN E 201 52.92 -145.39 REMARK 500 LEU E 225 78.16 -118.32 REMARK 500 ARG E 277 -97.28 51.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL F 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 G 801 DBREF 5Y6Z A 1 462 UNP L7WS61 L7WS61_9ENTO 1732 2193 DBREF 5Y6Z B 581 613 PDB 5Y6Z 5Y6Z 581 613 DBREF 5Y6Z C 688 701 PDB 5Y6Z 5Y6Z 688 701 DBREF 5Y6Z E 1 462 UNP L7WS61 L7WS61_9ENTO 1732 2193 DBREF 5Y6Z F 581 613 PDB 5Y6Z 5Y6Z 581 613 DBREF 5Y6Z G 688 701 PDB 5Y6Z 5Y6Z 688 701 SEQADV 5Y6Z HIS A 463 UNP L7WS61 EXPRESSION TAG SEQADV 5Y6Z HIS A 464 UNP L7WS61 EXPRESSION TAG SEQADV 5Y6Z HIS A 465 UNP L7WS61 EXPRESSION TAG SEQADV 5Y6Z HIS A 466 UNP L7WS61 EXPRESSION TAG SEQADV 5Y6Z HIS A 467 UNP L7WS61 EXPRESSION TAG SEQADV 5Y6Z HIS A 468 UNP L7WS61 EXPRESSION TAG SEQADV 5Y6Z HIS E 463 UNP L7WS61 EXPRESSION TAG SEQADV 5Y6Z HIS E 464 UNP L7WS61 EXPRESSION TAG SEQADV 5Y6Z HIS E 465 UNP L7WS61 EXPRESSION TAG SEQADV 5Y6Z HIS E 466 UNP L7WS61 EXPRESSION TAG SEQADV 5Y6Z HIS E 467 UNP L7WS61 EXPRESSION TAG SEQADV 5Y6Z HIS E 468 UNP L7WS61 EXPRESSION TAG SEQRES 1 A 468 GLY GLU ILE GLN TRP MET LYS SER ASN LYS GLU THR GLY SEQRES 2 A 468 ARG LEU ASN ILE ASN GLY PRO THR ARG THR LYS LEU GLU SEQRES 3 A 468 PRO SER ALA PHE TYR ASP VAL PHE GLU GLY SER LYS LYS SEQRES 4 A 468 PRO ALA VAL LEU THR SER LYS ASP PRO ARG LEU GLU VAL SEQRES 5 A 468 ASP PHE GLU GLN ALA LEU PHE SER LYS TYR VAL GLY ASN SEQRES 6 A 468 THR LEU HIS GLU PRO ASP GLU TYR VAL THR GLN ALA ALA SEQRES 7 A 468 LEU HIS TYR ALA ASN GLN LEU LYS GLN LEU ASP ILE ASN SEQRES 8 A 468 VAL ASN LYS MET SER MET GLU GLU ALA CYS TYR GLY THR SEQRES 9 A 468 GLU TYR LEU GLU ALA ILE ASP LEU HIS THR SER ALA GLY SEQRES 10 A 468 TYR PRO TYR SER ALA LEU GLY VAL LYS LYS ARG ASP ILE SEQRES 11 A 468 LEU ASP PRO ILE THR ARG ASP THR THR LYS MET LYS PHE SEQRES 12 A 468 TYR MET ASP LYS TYR GLY LEU ASP LEU PRO TYR SER THR SEQRES 13 A 468 TYR VAL LYS ASP GLU LEU ARG SER LEU ASP LYS ILE ARG SEQRES 14 A 468 LYS GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 A 468 ASP SER VAL TYR LEU ARG MET THR PHE GLY HIS LEU TYR SEQRES 16 A 468 GLU THR PHE HIS ALA ASN PRO GLY THR VAL THR GLY SER SEQRES 17 A 468 ALA VAL GLY CYS ASN PRO ASP VAL PHE TRP SER LYS LEU SEQRES 18 A 468 PRO ILE LEU LEU PRO GLY SER LEU PHE ALA PHE ASP TYR SEQRES 19 A 468 SER GLY TYR ASP ALA SER LEU SER PRO VAL TRP PHE ARG SEQRES 20 A 468 ALA LEU GLU VAL VAL LEU ARG GLU ILE GLY TYR PRO GLU SEQRES 21 A 468 GLU ALA VAL SER LEU ILE GLU GLY ILE ASN HIS THR HIS SEQRES 22 A 468 HIS VAL TYR ARG ASN ARG THR TYR CYS VAL LEU GLY GLY SEQRES 23 A 468 MET PRO SER GLY CYS SER GLY THR SER ILE PHE ASN SER SEQRES 24 A 468 MET ILE ASN ASN ILE ILE ILE ARG THR LEU LEU ILE LYS SEQRES 25 A 468 THR PHE LYS GLY ILE ASP LEU ASP GLU LEU HIS MET VAL SEQRES 26 A 468 ALA TYR GLY ASP ASP VAL LEU ALA SER TYR PRO PHE PRO SEQRES 27 A 468 ILE ASP CYS LEU GLU LEU ALA LYS THR GLY LYS GLU TYR SEQRES 28 A 468 GLY LEU THR MET THR PRO ALA ASP LYS SER PRO CYS PHE SEQRES 29 A 468 ASN GLU VAL THR TRP GLU ASN ALA THR PHE LEU LYS ARG SEQRES 30 A 468 GLY PHE LEU PRO ASP HIS GLN PHE PRO PHE LEU ILE HIS SEQRES 31 A 468 PRO THR MET PRO MET ARG GLU ILE HIS GLU SER ILE ARG SEQRES 32 A 468 TRP THR LYS ASP ALA ARG ASN THR GLN ASP HIS VAL ARG SEQRES 33 A 468 SER LEU CYS LEU LEU ALA TRP HIS ASN GLY LYS GLU GLU SEQRES 34 A 468 TYR GLU LYS PHE VAL SER THR ILE ARG SER VAL PRO ILE SEQRES 35 A 468 GLY ARG ALA LEU ALA ILE PRO ASN TYR GLU ASN LEU ARG SEQRES 36 A 468 ARG ASN TRP LEU GLU LEU PHE HIS HIS HIS HIS HIS HIS SEQRES 1 B 33 G G G A G A U G A A A G U SEQRES 2 B 33 C U C C A G G U C U C U C SEQRES 3 B 33 G U C G A A A SEQRES 1 C 14 U G U U C G A C G A G A G SEQRES 2 C 14 A SEQRES 1 E 468 GLY GLU ILE GLN TRP MET LYS SER ASN LYS GLU THR GLY SEQRES 2 E 468 ARG LEU ASN ILE ASN GLY PRO THR ARG THR LYS LEU GLU SEQRES 3 E 468 PRO SER ALA PHE TYR ASP VAL PHE GLU GLY SER LYS LYS SEQRES 4 E 468 PRO ALA VAL LEU THR SER LYS ASP PRO ARG LEU GLU VAL SEQRES 5 E 468 ASP PHE GLU GLN ALA LEU PHE SER LYS TYR VAL GLY ASN SEQRES 6 E 468 THR LEU HIS GLU PRO ASP GLU TYR VAL THR GLN ALA ALA SEQRES 7 E 468 LEU HIS TYR ALA ASN GLN LEU LYS GLN LEU ASP ILE ASN SEQRES 8 E 468 VAL ASN LYS MET SER MET GLU GLU ALA CYS TYR GLY THR SEQRES 9 E 468 GLU TYR LEU GLU ALA ILE ASP LEU HIS THR SER ALA GLY SEQRES 10 E 468 TYR PRO TYR SER ALA LEU GLY VAL LYS LYS ARG ASP ILE SEQRES 11 E 468 LEU ASP PRO ILE THR ARG ASP THR THR LYS MET LYS PHE SEQRES 12 E 468 TYR MET ASP LYS TYR GLY LEU ASP LEU PRO TYR SER THR SEQRES 13 E 468 TYR VAL LYS ASP GLU LEU ARG SER LEU ASP LYS ILE ARG SEQRES 14 E 468 LYS GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 E 468 ASP SER VAL TYR LEU ARG MET THR PHE GLY HIS LEU TYR SEQRES 16 E 468 GLU THR PHE HIS ALA ASN PRO GLY THR VAL THR GLY SER SEQRES 17 E 468 ALA VAL GLY CYS ASN PRO ASP VAL PHE TRP SER LYS LEU SEQRES 18 E 468 PRO ILE LEU LEU PRO GLY SER LEU PHE ALA PHE ASP TYR SEQRES 19 E 468 SER GLY TYR ASP ALA SER LEU SER PRO VAL TRP PHE ARG SEQRES 20 E 468 ALA LEU GLU VAL VAL LEU ARG GLU ILE GLY TYR PRO GLU SEQRES 21 E 468 GLU ALA VAL SER LEU ILE GLU GLY ILE ASN HIS THR HIS SEQRES 22 E 468 HIS VAL TYR ARG ASN ARG THR TYR CYS VAL LEU GLY GLY SEQRES 23 E 468 MET PRO SER GLY CYS SER GLY THR SER ILE PHE ASN SER SEQRES 24 E 468 MET ILE ASN ASN ILE ILE ILE ARG THR LEU LEU ILE LYS SEQRES 25 E 468 THR PHE LYS GLY ILE ASP LEU ASP GLU LEU HIS MET VAL SEQRES 26 E 468 ALA TYR GLY ASP ASP VAL LEU ALA SER TYR PRO PHE PRO SEQRES 27 E 468 ILE ASP CYS LEU GLU LEU ALA LYS THR GLY LYS GLU TYR SEQRES 28 E 468 GLY LEU THR MET THR PRO ALA ASP LYS SER PRO CYS PHE SEQRES 29 E 468 ASN GLU VAL THR TRP GLU ASN ALA THR PHE LEU LYS ARG SEQRES 30 E 468 GLY PHE LEU PRO ASP HIS GLN PHE PRO PHE LEU ILE HIS SEQRES 31 E 468 PRO THR MET PRO MET ARG GLU ILE HIS GLU SER ILE ARG SEQRES 32 E 468 TRP THR LYS ASP ALA ARG ASN THR GLN ASP HIS VAL ARG SEQRES 33 E 468 SER LEU CYS LEU LEU ALA TRP HIS ASN GLY LYS GLU GLU SEQRES 34 E 468 TYR GLU LYS PHE VAL SER THR ILE ARG SER VAL PRO ILE SEQRES 35 E 468 GLY ARG ALA LEU ALA ILE PRO ASN TYR GLU ASN LEU ARG SEQRES 36 E 468 ARG ASN TRP LEU GLU LEU PHE HIS HIS HIS HIS HIS HIS SEQRES 1 F 33 G G G A G A U G A A A G U SEQRES 2 F 33 C U C C A G G U C U C U C SEQRES 3 F 33 G U C G A A A SEQRES 1 G 14 U G U U C G A C G A G A G SEQRES 2 G 14 A HET PO4 A 501 5 HET GOL A 502 6 HET PO4 B 701 5 HET GOL B 702 6 HET PO4 C 801 5 HET GOL C 802 6 HET MG E 501 1 HET GOL E 502 6 HET GOL E 503 6 HET GOL F 701 6 HET PO4 G 801 5 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 PO4 4(O4 P 3-) FORMUL 8 GOL 6(C3 H8 O3) FORMUL 13 MG MG 2+ FORMUL 18 HOH *377(H2 O) HELIX 1 AA1 ASN A 9 GLY A 13 1 5 HELIX 2 AA2 ASP A 53 SER A 60 1 8 HELIX 3 AA3 ASP A 71 LYS A 86 1 16 HELIX 4 AA4 GLN A 87 ASP A 89 5 3 HELIX 5 AA5 SER A 96 GLY A 103 1 8 HELIX 6 AA6 TYR A 120 GLY A 124 5 5 HELIX 7 AA7 LYS A 126 ILE A 130 5 5 HELIX 8 AA8 THR A 138 GLY A 149 1 12 HELIX 9 AA9 LEU A 165 LYS A 170 1 6 HELIX 10 AB1 SER A 180 ASN A 201 1 22 HELIX 11 AB2 ASN A 213 LEU A 225 1 13 HELIX 12 AB3 GLY A 236 LEU A 241 1 6 HELIX 13 AB4 SER A 242 ILE A 256 1 15 HELIX 14 AB5 PRO A 259 SER A 264 1 6 HELIX 15 AB6 ILE A 266 ASN A 270 1 5 HELIX 16 AB7 GLY A 293 PHE A 314 1 22 HELIX 17 AB8 ASP A 318 LEU A 322 5 5 HELIX 18 AB9 ASP A 340 GLU A 350 1 11 HELIX 19 AC1 PRO A 394 ARG A 403 1 10 HELIX 20 AC2 ASP A 407 ARG A 409 5 3 HELIX 21 AC3 ASN A 410 TRP A 423 1 14 HELIX 22 AC4 GLY A 426 ARG A 438 1 13 HELIX 23 AC5 VAL A 440 ALA A 445 1 6 HELIX 24 AC6 ASN A 450 LEU A 461 1 12 HELIX 25 AC7 ASN E 9 GLY E 13 1 5 HELIX 26 AC8 ASP E 53 SER E 60 1 8 HELIX 27 AC9 ASP E 71 LYS E 86 1 16 HELIX 28 AD1 GLN E 87 ASP E 89 5 3 HELIX 29 AD2 SER E 96 GLY E 103 1 8 HELIX 30 AD3 LYS E 126 ILE E 130 5 5 HELIX 31 AD4 THR E 138 GLY E 149 1 12 HELIX 32 AD5 LEU E 165 LYS E 170 1 6 HELIX 33 AD6 SER E 180 ALA E 200 1 21 HELIX 34 AD7 ASN E 213 LEU E 225 1 13 HELIX 35 AD8 GLY E 236 LEU E 241 1 6 HELIX 36 AD9 SER E 242 ILE E 256 1 15 HELIX 37 AE1 PRO E 259 ASN E 270 1 12 HELIX 38 AE2 GLY E 293 PHE E 314 1 22 HELIX 39 AE3 ASP E 318 LEU E 322 5 5 HELIX 40 AE4 ASP E 340 TYR E 351 1 12 HELIX 41 AE5 PRO E 394 ARG E 403 1 10 HELIX 42 AE6 ASP E 407 ARG E 409 5 3 HELIX 43 AE7 ASN E 410 TRP E 423 1 14 HELIX 44 AE8 GLY E 426 ARG E 438 1 13 HELIX 45 AE9 VAL E 440 ALA E 445 1 6 HELIX 46 AF1 ASN E 450 LEU E 461 1 12 SHEET 1 AA1 5 GLU A 2 SER A 8 0 SHEET 2 AA1 5 ARG A 279 LEU A 284 -1 O CYS A 282 N GLN A 4 SHEET 3 AA1 5 HIS A 271 TYR A 276 -1 N HIS A 274 O TYR A 281 SHEET 4 AA1 5 TYR A 154 VAL A 158 1 N TYR A 154 O VAL A 275 SHEET 5 AA1 5 LEU A 175 ALA A 178 -1 O ILE A 176 N TYR A 157 SHEET 1 AA2 2 GLU A 26 PRO A 27 0 SHEET 2 AA2 2 TRP A 404 THR A 405 -1 O THR A 405 N GLU A 26 SHEET 1 AA3 2 LYS A 39 PRO A 40 0 SHEET 2 AA3 2 LEU A 162 ARG A 163 -1 O ARG A 163 N LYS A 39 SHEET 1 AA4 4 HIS A 323 TYR A 327 0 SHEET 2 AA4 4 ASP A 330 TYR A 335 -1 O SER A 334 N HIS A 323 SHEET 3 AA4 4 SER A 228 TYR A 234 -1 N SER A 228 O TYR A 335 SHEET 4 AA4 4 MET A 355 THR A 356 -1 O THR A 356 N ASP A 233 SHEET 1 AA5 2 GLY A 378 PRO A 381 0 SHEET 2 AA5 2 ILE A 389 THR A 392 -1 O THR A 392 N GLY A 378 SHEET 1 AA6 5 GLU E 2 SER E 8 0 SHEET 2 AA6 5 ARG E 279 LEU E 284 -1 O THR E 280 N LYS E 7 SHEET 3 AA6 5 HIS E 271 TYR E 276 -1 N HIS E 274 O TYR E 281 SHEET 4 AA6 5 TYR E 154 VAL E 158 1 N TYR E 154 O HIS E 273 SHEET 5 AA6 5 LEU E 175 ALA E 178 -1 O ILE E 176 N TYR E 157 SHEET 1 AA7 2 GLU E 26 PRO E 27 0 SHEET 2 AA7 2 TRP E 404 THR E 405 -1 O THR E 405 N GLU E 26 SHEET 1 AA8 2 LYS E 39 PRO E 40 0 SHEET 2 AA8 2 LEU E 162 ARG E 163 -1 O ARG E 163 N LYS E 39 SHEET 1 AA9 4 HIS E 323 TYR E 327 0 SHEET 2 AA9 4 ASP E 330 TYR E 335 -1 O SER E 334 N HIS E 323 SHEET 3 AA9 4 SER E 228 TYR E 234 -1 N SER E 228 O TYR E 335 SHEET 4 AA9 4 MET E 355 THR E 356 -1 O THR E 356 N ASP E 233 SHEET 1 AB1 2 GLY E 378 PRO E 381 0 SHEET 2 AB1 2 ILE E 389 THR E 392 -1 O THR E 392 N GLY E 378 LINK OD1 ASP E 330 MG MG E 501 1555 1555 2.32 CISPEP 1 TYR A 118 PRO A 119 0 -1.95 CISPEP 2 TYR E 118 PRO E 119 0 0.83 SITE 1 AC1 6 ARG A 163 LYS A 167 ARG A 174 HOH A 604 SITE 2 AC1 6 HOH A 648 HOH A 699 SITE 1 AC2 5 HIS A 68 GLU A 69 ARG A 247 LEU A 284 SITE 2 AC2 5 ASN A 457 SITE 1 AC3 3 HOH A 607 G B 607 G C 696 SITE 1 AC4 8 LYS A 159 LEU A 175 ILE A 176 SER A 289 SITE 2 AC4 8 G B 600 HOH B 817 HOH B 824 A C 701 SITE 1 AC5 4 G C 696 A C 697 HOH C 903 HOH C 917 SITE 1 AC6 6 LEU A 25 LEU A 162 TRP A 404 G C 698 SITE 2 AC6 6 A C 699 HOH C 912 SITE 1 AC7 2 ASP E 330 A G 701 SITE 1 AC8 3 GLU E 35 HIS E 399 HOH E 738 SITE 1 AC9 5 HIS E 68 GLU E 69 ARG E 247 HOH E 661 SITE 2 AC9 5 G F 607 SITE 1 AD1 4 ARG E 174 G F 600 HOH F 804 A G 701 SITE 1 AD2 3 A G 697 G G 698 HOH G 903 CRYST1 93.724 93.724 167.512 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010670 0.006160 0.000000 0.00000 SCALE2 0.000000 0.012320 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005970 0.00000