HEADER TRANSFERASE 16-AUG-17 5Y72 TITLE DMSPP BOUND AMBP3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMBP3; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FISCHERELLA AMBIGUA UTEX 1903; SOURCE 3 ORGANISM_TAXID: 230521; SOURCE 4 GENE: AMBP3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PRENYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.P.WONG,T.AWAKAWA,Y.NAKASHIMA REVDAT 2 22-NOV-23 5Y72 1 COMPND HETSYN FORMUL REVDAT 1 18-JUL-18 5Y72 0 JRNL AUTH C.P.WONG,T.AWAKAWA,Y.NAKASHIMA,T.MORI,Q.ZHU,X.LIU,I.ABE JRNL TITL TWO DISTINCT SUBSTRATE BINDING MODES FOR THE NORMAL AND JRNL TITL 2 REVERSE PRENYLATION OF HAPALINDOLES BY THE PRENYLTRANSFERASE JRNL TITL 3 AMBP3 JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 57 560 2018 JRNL REFN ESSN 1521-3773 JRNL PMID 29178634 JRNL DOI 10.1002/ANIE.201710682 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 79907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 3948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9683 - 5.0080 0.98 2767 142 0.1653 0.1511 REMARK 3 2 5.0080 - 3.9758 0.99 2782 152 0.1348 0.1365 REMARK 3 3 3.9758 - 3.4735 0.98 2761 151 0.1493 0.1827 REMARK 3 4 3.4735 - 3.1560 0.98 2774 141 0.1772 0.1866 REMARK 3 5 3.1560 - 2.9298 0.98 2779 147 0.1902 0.2070 REMARK 3 6 2.9298 - 2.7571 0.97 2753 129 0.1945 0.2075 REMARK 3 7 2.7571 - 2.6191 0.96 2713 139 0.1955 0.2420 REMARK 3 8 2.6191 - 2.5051 0.96 2736 135 0.1969 0.2276 REMARK 3 9 2.5051 - 2.4086 0.96 2701 142 0.1886 0.2426 REMARK 3 10 2.4086 - 2.3255 0.97 2741 160 0.1893 0.2183 REMARK 3 11 2.3255 - 2.2528 0.97 2714 160 0.1956 0.2247 REMARK 3 12 2.2528 - 2.1884 0.96 2708 139 0.1901 0.2623 REMARK 3 13 2.1884 - 2.1308 0.96 2710 132 0.1892 0.2378 REMARK 3 14 2.1308 - 2.0788 0.96 2758 123 0.2002 0.2495 REMARK 3 15 2.0788 - 2.0316 0.96 2729 126 0.1882 0.2058 REMARK 3 16 2.0316 - 1.9883 0.96 2732 136 0.1965 0.2414 REMARK 3 17 1.9883 - 1.9486 0.96 2645 183 0.1998 0.2114 REMARK 3 18 1.9486 - 1.9118 0.96 2653 158 0.2014 0.2554 REMARK 3 19 1.9118 - 1.8777 0.95 2730 129 0.2069 0.2358 REMARK 3 20 1.8777 - 1.8458 0.95 2666 153 0.2183 0.2364 REMARK 3 21 1.8458 - 1.8161 0.95 2748 126 0.2128 0.2748 REMARK 3 22 1.8161 - 1.7881 0.95 2633 110 0.2205 0.2486 REMARK 3 23 1.7881 - 1.7618 0.95 2755 133 0.2035 0.2569 REMARK 3 24 1.7618 - 1.7370 0.95 2664 147 0.2111 0.2450 REMARK 3 25 1.7370 - 1.7135 0.94 2585 135 0.2218 0.2764 REMARK 3 26 1.7135 - 1.6913 0.94 2729 159 0.2260 0.2562 REMARK 3 27 1.6913 - 1.6701 0.94 2618 137 0.2550 0.2848 REMARK 3 28 1.6701 - 1.6500 0.94 2675 124 0.2647 0.2990 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4742 REMARK 3 ANGLE : 0.873 6484 REMARK 3 CHIRALITY : 0.053 718 REMARK 3 PLANARITY : 0.006 839 REMARK 3 DIHEDRAL : 7.217 3751 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y72 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79907 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.50600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5Y4G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, PEG 8000, MAGNESIUM CHLORIDE, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 267 REMARK 465 ALA A 268 REMARK 465 ILE A 298 REMARK 465 PRO A 299 REMARK 465 GLU A 300 REMARK 465 ALA A 301 REMARK 465 ASN A 302 REMARK 465 SER A 303 REMARK 465 VAL A 304 REMARK 465 PHE A 305 REMARK 465 ASP A 306 REMARK 465 LEU A 307 REMARK 465 PRO A 308 REMARK 465 SER A 309 REMARK 465 SER A 310 REMARK 465 ASP A 311 REMARK 465 THR A 312 REMARK 465 GLU A 313 REMARK 465 ASP A 314 REMARK 465 LYS A 315 REMARK 465 LEU A 316 REMARK 465 ASN A 317 REMARK 465 SER A 318 REMARK 465 ILE A 319 REMARK 465 VAL A 320 REMARK 465 MET A 321 REMARK 465 SER A 322 REMARK 465 LYS A 323 REMARK 465 LEU A 324 REMARK 465 ALA A 325 REMARK 465 ALA A 326 REMARK 465 ALA A 327 REMARK 465 LEU A 328 REMARK 465 GLU A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 MET B 1 REMARK 465 ASP B 266A REMARK 465 ALA B 266B REMARK 465 LYS B 266C REMARK 465 ILE B 298 REMARK 465 PRO B 299 REMARK 465 GLU B 300 REMARK 465 ALA B 301 REMARK 465 ASN B 302 REMARK 465 SER B 303 REMARK 465 VAL B 304 REMARK 465 PHE B 305 REMARK 465 ASP B 306 REMARK 465 LEU B 307 REMARK 465 PRO B 308 REMARK 465 SER B 309 REMARK 465 SER B 310 REMARK 465 ASP B 311 REMARK 465 THR B 312 REMARK 465 GLU B 313 REMARK 465 ASP B 314 REMARK 465 LYS B 315 REMARK 465 LEU B 316 REMARK 465 ASN B 317 REMARK 465 SER B 318 REMARK 465 ILE B 319 REMARK 465 VAL B 320 REMARK 465 MET B 321 REMARK 465 SER B 322 REMARK 465 LYS B 323 REMARK 465 LEU B 324 REMARK 465 ALA B 325 REMARK 465 ALA B 326 REMARK 465 ALA B 327 REMARK 465 LEU B 328 REMARK 465 GLU B 329 REMARK 465 HIS B 330 REMARK 465 HIS B 331 REMARK 465 HIS B 332 REMARK 465 HIS B 333 REMARK 465 HIS B 334 REMARK 465 HIS B 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 ASP A 28 CG OD1 OD2 REMARK 470 ASN A 52 CG OD1 ND2 REMARK 470 GLN A 53 CG CD OE1 NE2 REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 GLN A 96 CG CD OE1 NE2 REMARK 470 ASP A 108 CG OD1 OD2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 GLN A 190 CG CD OE1 NE2 REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 CYS A 205 SG REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 ASP A 254 CG OD1 OD2 REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 LYS A 270 CG CD CE NZ REMARK 470 THR B 2 OG1 CG2 REMARK 470 ASN B 5 CG OD1 ND2 REMARK 470 ARG B 6 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 28 CG OD1 OD2 REMARK 470 GLN B 32 CG CD OE1 NE2 REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 ASN B 52 CG OD1 ND2 REMARK 470 GLN B 53 CG CD OE1 NE2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 GLU B 66 CG CD OE1 OE2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 ASP B 108 CG OD1 OD2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 LYS B 130 CG CD CE NZ REMARK 470 LYS B 136 CG CD CE NZ REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 GLN B 190 CG CD OE1 NE2 REMARK 470 GLU B 192 CG CD OE1 OE2 REMARK 470 ASP B 196 CG OD1 OD2 REMARK 470 CYS B 205 SG REMARK 470 GLU B 232 CG CD OE1 OE2 REMARK 470 LYS B 243 CG CD CE NZ REMARK 470 LEU B 253 CG CD1 CD2 REMARK 470 ASP B 254 CG OD1 OD2 REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 MET B 291 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 650 O HOH A 711 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 40 22.48 -146.15 REMARK 500 ASN A 49 44.03 -109.07 REMARK 500 TYR A 111 -57.36 -141.32 REMARK 500 LYS A 270 -90.83 -125.56 REMARK 500 THR B 41 -166.25 -129.79 REMARK 500 TYR B 111 -54.88 -142.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 710 DISTANCE = 6.24 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DST A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DST B 401 DBREF 5Y72 A 1 322 UNP V5TDY7 V5TDY7_9CYAN 1 322 DBREF 5Y72 B 1 322 UNP V5TDY7 V5TDY7_9CYAN 1 322 SEQADV 5Y72 LYS A 323 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 LEU A 324 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 ALA A 325 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 ALA A 326 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 ALA A 327 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 LEU A 328 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 GLU A 329 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 HIS A 330 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 HIS A 331 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 HIS A 332 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 HIS A 333 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 HIS A 334 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 HIS A 335 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 LYS B 323 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 LEU B 324 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 ALA B 325 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 ALA B 326 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 ALA B 327 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 LEU B 328 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 GLU B 329 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 HIS B 330 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 HIS B 331 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 HIS B 332 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 HIS B 333 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 HIS B 334 UNP V5TDY7 EXPRESSION TAG SEQADV 5Y72 HIS B 335 UNP V5TDY7 EXPRESSION TAG SEQRES 1 A 335 MET THR ILE VAL ASN ARG ILE ARG THR ASP VAL VAL ASN SEQRES 2 A 335 VAL ALA LYS SER PHE GLY ALA GLU TYR SER GLU ALA VAL SEQRES 3 A 335 ILE ASP GLN ILE PHE GLN GLY PHE GLY GLU LYS PHE THR SEQRES 4 A 335 ASN THR GLY PHE ALA ILE ARG VAL GLN ASN LYS ARG ASN SEQRES 5 A 335 GLN LYS VAL ASP CYS ASN ILE ARG TYR GLY GLU ALA LYS SEQRES 6 A 335 GLU ASN CYS LEU ALA TRP ASP ILE ALA ARG GLU SER GLY SEQRES 7 A 335 LEU LEU SER ASP GLN GLY HIS PRO VAL ASP THR LEU ILE SEQRES 8 A 335 GLN GLU MET PHE GLN ALA ILE PRO ALA ILE ALA TYR GLY SEQRES 9 A 335 ALA ASP PHE ASP ILE ASN TYR GLY LEU VAL LYS ILE TRP SEQRES 10 A 335 HIS LEU PRO LYS ILE VAL PRO VAL GLU GLU ALA PHE LYS SEQRES 11 A 335 ILE PRO SER LEU PRO LYS SER VAL ASN ALA HIS ILE ASP SEQRES 12 A 335 PHE PHE LYS LYS TYR HIS LEU ASP ALA LEU CYS ALA LEU SEQRES 13 A 335 THR VAL ASP TYR ARG ASN LYS SER THR ASN LEU TYR PHE SEQRES 14 A 335 ASP ALA HIS HIS PRO GLU GLN ARG THR THR GLN PHE TYR SEQRES 15 A 335 LYS ASN ILE LEU GLN SER GLN GLN PHE GLU VAL PRO SER SEQRES 16 A 335 ASP GLU VAL LEU GLU ILE LEU VAL ASN CYS PRO GLU ILE SEQRES 17 A 335 ALA VAL THR PHE ASN TRP SER SER PRO GLY ILE GLU ARG SEQRES 18 A 335 MET CYS PHE TYR THR ALA PHE VAL ASN ARG GLU THR VAL SEQRES 19 A 335 PRO GLN HIS ILE ASN PRO VAL LEU LYS LYS PHE ALA GLN SEQRES 20 A 335 GLU ALA PRO ALA LEU LEU ASP ASN PRO GLY PHE LEU VAL SEQRES 21 A 335 GLY TRP SER PHE GLY PRO ASP ALA LYS LYS GLY THR TYR SEQRES 22 A 335 ILE LYS ILE ASP VAL ASP TYR HIS GLY LEU VAL VAL PRO SEQRES 23 A 335 SER PHE PHE HIS MET HIS ASN LEU PRO LEU PRO ILE PRO SEQRES 24 A 335 GLU ALA ASN SER VAL PHE ASP LEU PRO SER SER ASP THR SEQRES 25 A 335 GLU ASP LYS LEU ASN SER ILE VAL MET SER LYS LEU ALA SEQRES 26 A 335 ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 335 MET THR ILE VAL ASN ARG ILE ARG THR ASP VAL VAL ASN SEQRES 2 B 335 VAL ALA LYS SER PHE GLY ALA GLU TYR SER GLU ALA VAL SEQRES 3 B 335 ILE ASP GLN ILE PHE GLN GLY PHE GLY GLU LYS PHE THR SEQRES 4 B 335 ASN THR GLY PHE ALA ILE ARG VAL GLN ASN LYS ARG ASN SEQRES 5 B 335 GLN LYS VAL ASP CYS ASN ILE ARG TYR GLY GLU ALA LYS SEQRES 6 B 335 GLU ASN CYS LEU ALA TRP ASP ILE ALA ARG GLU SER GLY SEQRES 7 B 335 LEU LEU SER ASP GLN GLY HIS PRO VAL ASP THR LEU ILE SEQRES 8 B 335 GLN GLU MET PHE GLN ALA ILE PRO ALA ILE ALA TYR GLY SEQRES 9 B 335 ALA ASP PHE ASP ILE ASN TYR GLY LEU VAL LYS ILE TRP SEQRES 10 B 335 HIS LEU PRO LYS ILE VAL PRO VAL GLU GLU ALA PHE LYS SEQRES 11 B 335 ILE PRO SER LEU PRO LYS SER VAL ASN ALA HIS ILE ASP SEQRES 12 B 335 PHE PHE LYS LYS TYR HIS LEU ASP ALA LEU CYS ALA LEU SEQRES 13 B 335 THR VAL ASP TYR ARG ASN LYS SER THR ASN LEU TYR PHE SEQRES 14 B 335 ASP ALA HIS HIS PRO GLU GLN ARG THR THR GLN PHE TYR SEQRES 15 B 335 LYS ASN ILE LEU GLN SER GLN GLN PHE GLU VAL PRO SER SEQRES 16 B 335 ASP GLU VAL LEU GLU ILE LEU VAL ASN CYS PRO GLU ILE SEQRES 17 B 335 ALA VAL THR PHE ASN TRP SER SER PRO GLY ILE GLU ARG SEQRES 18 B 335 MET CYS PHE TYR THR ALA PHE VAL ASN ARG GLU THR VAL SEQRES 19 B 335 PRO GLN HIS ILE ASN PRO VAL LEU LYS LYS PHE ALA GLN SEQRES 20 B 335 GLU ALA PRO ALA LEU LEU ASP ASN PRO GLY PHE LEU VAL SEQRES 21 B 335 GLY TRP SER PHE GLY PRO ASP ALA LYS LYS GLY THR TYR SEQRES 22 B 335 ILE LYS ILE ASP VAL ASP TYR HIS GLY LEU VAL VAL PRO SEQRES 23 B 335 SER PHE PHE HIS MET HIS ASN LEU PRO LEU PRO ILE PRO SEQRES 24 B 335 GLU ALA ASN SER VAL PHE ASP LEU PRO SER SER ASP THR SEQRES 25 B 335 GLU ASP LYS LEU ASN SER ILE VAL MET SER LYS LEU ALA SEQRES 26 B 335 ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET DST A 401 14 HET DST B 401 14 HETNAM DST DIMETHYLALLYL S-THIOLODIPHOSPHATE HETSYN DST DMASPP; DMAPP; DMADP; DIMETHYLALLYL PYROPHOSPHATE; HETSYN 2 DST DIMETHYLALLYL DIPHOSPHATE; ISOPRENYL PYROPHOSPHATE FORMUL 3 DST 2(C5 H12 O6 P2 S) FORMUL 5 HOH *427(H2 O) HELIX 1 AA1 THR A 2 GLY A 19 1 18 HELIX 2 AA2 SER A 23 THR A 41 1 19 HELIX 3 AA3 CYS A 68 SER A 77 1 10 HELIX 4 AA4 PRO A 86 ILE A 98 1 13 HELIX 5 AA5 GLU A 126 PHE A 129 5 4 HELIX 6 AA6 PRO A 135 HIS A 141 1 7 HELIX 7 AA7 HIS A 141 TYR A 148 1 8 HELIX 8 AA8 HIS A 173 ARG A 177 5 5 HELIX 9 AA9 THR A 178 GLN A 189 1 12 HELIX 10 AB1 SER A 195 VAL A 203 1 9 HELIX 11 AB2 PRO A 235 ILE A 238 5 4 HELIX 12 AB3 ASN A 239 ALA A 249 1 11 HELIX 13 AB4 LEU A 283 HIS A 292 1 10 HELIX 14 AB5 ILE B 3 GLY B 19 1 17 HELIX 15 AB6 SER B 23 THR B 41 1 19 HELIX 16 AB7 CYS B 68 SER B 77 1 10 HELIX 17 AB8 PRO B 86 ILE B 98 1 13 HELIX 18 AB9 GLU B 126 PHE B 129 5 4 HELIX 19 AC1 PRO B 135 HIS B 141 1 7 HELIX 20 AC2 HIS B 141 TYR B 148 1 8 HELIX 21 AC3 HIS B 173 ARG B 177 5 5 HELIX 22 AC4 THR B 178 GLN B 189 1 12 HELIX 23 AC5 SER B 195 VAL B 203 1 9 HELIX 24 AC6 PRO B 235 ILE B 238 5 4 HELIX 25 AC7 ASN B 239 ALA B 249 1 11 HELIX 26 AC8 LEU B 283 HIS B 292 1 10 SHEET 1 AA112 VAL A 123 PRO A 124 0 SHEET 2 AA112 ALA A 152 ASP A 159 -1 O LEU A 153 N VAL A 123 SHEET 3 AA112 SER A 164 ASP A 170 -1 O TYR A 168 N CYS A 154 SHEET 4 AA112 GLU A 207 ASN A 213 -1 O PHE A 212 N THR A 165 SHEET 5 AA112 ARG A 221 PHE A 228 -1 O CYS A 223 N ALA A 209 SHEET 6 AA112 PHE A 258 PHE A 264 -1 O VAL A 260 N THR A 226 SHEET 7 AA112 TYR A 273 ASP A 279 -1 O TYR A 273 N SER A 263 SHEET 8 AA112 GLY A 42 ARG A 51 -1 N VAL A 47 O ILE A 276 SHEET 9 AA112 LYS A 54 GLU A 63 -1 O ASN A 58 N ARG A 46 SHEET 10 AA112 ALA A 100 ASP A 108 -1 O PHE A 107 N ILE A 59 SHEET 11 AA112 GLY A 112 PRO A 120 -1 O LEU A 119 N ILE A 101 SHEET 12 AA112 ALA A 152 ASP A 159 -1 O LEU A 156 N HIS A 118 SHEET 1 AA212 VAL B 123 PRO B 124 0 SHEET 2 AA212 ALA B 152 ASP B 159 -1 O LEU B 153 N VAL B 123 SHEET 3 AA212 SER B 164 ASP B 170 -1 O TYR B 168 N CYS B 154 SHEET 4 AA212 GLU B 207 ASN B 213 -1 O PHE B 212 N THR B 165 SHEET 5 AA212 ARG B 221 PHE B 228 -1 O CYS B 223 N ALA B 209 SHEET 6 AA212 PHE B 258 PHE B 264 -1 O VAL B 260 N THR B 226 SHEET 7 AA212 TYR B 273 ASP B 279 -1 O TYR B 273 N SER B 263 SHEET 8 AA212 GLY B 42 ARG B 51 -1 N VAL B 47 O ILE B 276 SHEET 9 AA212 LYS B 54 GLU B 63 -1 O ASN B 58 N ARG B 46 SHEET 10 AA212 ALA B 102 ASP B 108 -1 O PHE B 107 N ILE B 59 SHEET 11 AA212 GLY B 112 LEU B 119 -1 O VAL B 114 N ASP B 106 SHEET 12 AA212 ALA B 152 ASP B 159 -1 O LEU B 156 N HIS B 118 SITE 1 AC1 13 ARG A 46 ARG A 60 LYS A 115 TRP A 117 SITE 2 AC1 13 ASN A 166 TYR A 168 ARG A 221 TYR A 225 SITE 3 AC1 13 LYS A 275 HOH A 520 HOH A 536 HOH A 571 SITE 4 AC1 13 HOH A 649 SITE 1 AC2 14 ARG B 46 ARG B 60 LYS B 115 TRP B 117 SITE 2 AC2 14 ALA B 155 THR B 157 ASN B 166 TYR B 168 SITE 3 AC2 14 ARG B 221 TYR B 225 LYS B 275 HOH B 516 SITE 4 AC2 14 HOH B 519 HOH B 574 CRYST1 46.394 55.080 77.668 105.41 106.02 98.79 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021555 0.003333 0.007684 0.00000 SCALE2 0.000000 0.018371 0.006293 0.00000 SCALE3 0.000000 0.000000 0.014160 0.00000