HEADER OXIDOREDUCTASE 18-AUG-17 5Y7T TITLE QUATERNARY COMPLEX OF ASQJ-FE3+-2OG-D-CYCLOPEPTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON/ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ASQJ; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: UNP RESIDUES 109-416; COMPND 5 SYNONYM: 4'-METHOXYVIRIDICATIN/ASPOQUINOLONE BIOSYNTHESIS CLUSTER COMPND 6 PROTEIN ASQJ,ASPOQUINOLONE BIOSYNTHESIS PROTEIN J; COMPND 7 EC: 1.14.-.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS (STRAIN FGSC A4 / ATCC SOURCE 3 38163 / CBS 112.46 / NRRL 194 / M139); SOURCE 4 ORGANISM_TAXID: 227321; SOURCE 5 STRAIN: FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139; SOURCE 6 GENE: ASQJ, AN9227; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OCTAHEDRON, FERRIC, INITIAL STEP, D-CYCLOPEPTIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.LIAO REVDAT 5 27-MAR-24 5Y7T 1 LINK REVDAT 4 21-FEB-18 5Y7T 1 JRNL REVDAT 3 07-FEB-18 5Y7T 1 REMARK REVDAT 2 31-JAN-18 5Y7T 1 JRNL REVDAT 1 24-JAN-18 5Y7T 0 JRNL AUTH H.J.LIAO,J.LI,J.L.HUANG,M.DAVIDSON,I.KURNIKOV,T.S.LIN, JRNL AUTH 2 J.L.LEE,M.KURNIKOVA,Y.GUO,N.L.CHAN,W.C.CHANG JRNL TITL INSIGHTS INTO THE DESATURATION OF CYCLOPEPTIN AND ITS C3 JRNL TITL 2 EPIMER CATALYZED BY A NON-HEME IRON ENZYME: STRUCTURAL JRNL TITL 3 CHARACTERIZATION AND MECHANISM ELUCIDATION. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 57 1831 2018 JRNL REFN ESSN 1521-3773 JRNL PMID 29314482 JRNL DOI 10.1002/ANIE.201710567 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 17702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 870 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.2652 - 3.7040 0.91 2840 151 0.1586 0.1716 REMARK 3 2 3.7040 - 2.9410 0.93 2783 165 0.2124 0.2839 REMARK 3 3 2.9410 - 2.5695 0.99 2973 134 0.2241 0.2787 REMARK 3 4 2.5695 - 2.3347 1.00 2954 158 0.2297 0.3208 REMARK 3 5 2.3347 - 2.1674 0.87 2568 134 0.2467 0.2979 REMARK 3 6 2.1674 - 2.0397 0.92 2714 128 0.2725 0.3065 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2305 REMARK 3 ANGLE : 1.159 3146 REMARK 3 CHIRALITY : 0.063 369 REMARK 3 PLANARITY : 0.009 406 REMARK 3 DIHEDRAL : 8.646 1887 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6631 -26.8122 -20.5273 REMARK 3 T TENSOR REMARK 3 T11: 0.3153 T22: 0.5373 REMARK 3 T33: 0.4073 T12: 0.0778 REMARK 3 T13: 0.0454 T23: -0.0677 REMARK 3 L TENSOR REMARK 3 L11: 2.0997 L22: 1.7627 REMARK 3 L33: 2.4031 L12: -0.2453 REMARK 3 L13: 0.7708 L23: 0.7292 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: 0.6368 S13: -0.0044 REMARK 3 S21: -0.2552 S22: 0.0613 S23: -0.5876 REMARK 3 S31: 0.3304 S32: 0.6373 S33: 0.0101 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5811 -4.8677 -8.6430 REMARK 3 T TENSOR REMARK 3 T11: 0.4650 T22: 0.3768 REMARK 3 T33: 0.7189 T12: -0.1262 REMARK 3 T13: -0.0854 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 3.7435 L22: 2.3483 REMARK 3 L33: 5.3578 L12: -1.1742 REMARK 3 L13: -2.3061 L23: 0.9776 REMARK 3 S TENSOR REMARK 3 S11: 0.0503 S12: -0.2515 S13: 1.1836 REMARK 3 S21: 0.0026 S22: 0.1464 S23: -0.3190 REMARK 3 S31: -1.1507 S32: 0.8973 S33: -0.1384 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.6545 -18.2111 -10.3696 REMARK 3 T TENSOR REMARK 3 T11: 0.2558 T22: 0.2292 REMARK 3 T33: 0.2251 T12: 0.0341 REMARK 3 T13: 0.0035 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 2.6999 L22: 1.4544 REMARK 3 L33: 1.5566 L12: 0.2937 REMARK 3 L13: 1.0526 L23: -0.2936 REMARK 3 S TENSOR REMARK 3 S11: -0.1126 S12: -0.1156 S13: 0.2067 REMARK 3 S21: 0.1298 S22: 0.0043 S23: -0.1483 REMARK 3 S31: -0.0820 S32: 0.0955 S33: 0.1030 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0123 -32.0694 -5.8266 REMARK 3 T TENSOR REMARK 3 T11: 0.4178 T22: 0.3056 REMARK 3 T33: 0.3778 T12: 0.1022 REMARK 3 T13: -0.0815 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 1.7234 L22: 1.2352 REMARK 3 L33: 1.4008 L12: -0.3916 REMARK 3 L13: 0.5907 L23: -0.0782 REMARK 3 S TENSOR REMARK 3 S11: 0.2155 S12: -0.0854 S13: -0.1338 REMARK 3 S21: 0.4833 S22: -0.0476 S23: -0.0970 REMARK 3 S31: 0.4497 S32: 0.1325 S33: -0.1487 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 192 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4662 -22.3678 -7.3798 REMARK 3 T TENSOR REMARK 3 T11: 0.2764 T22: 0.3792 REMARK 3 T33: 0.3482 T12: 0.0374 REMARK 3 T13: -0.0292 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.6618 L22: 1.1323 REMARK 3 L33: 0.5489 L12: -0.0527 REMARK 3 L13: -0.2307 L23: -0.1645 REMARK 3 S TENSOR REMARK 3 S11: -0.0718 S12: -0.0304 S13: 0.0788 REMARK 3 S21: 0.1214 S22: 0.1055 S23: -0.3797 REMARK 3 S31: 0.0757 S32: 0.1916 S33: -0.0136 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 233 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8607 -6.9673 -19.1527 REMARK 3 T TENSOR REMARK 3 T11: 0.3467 T22: 0.2772 REMARK 3 T33: 0.4015 T12: -0.0616 REMARK 3 T13: -0.0417 T23: 0.0758 REMARK 3 L TENSOR REMARK 3 L11: 1.4167 L22: 0.8598 REMARK 3 L33: 0.4342 L12: 0.6669 REMARK 3 L13: 0.2151 L23: 0.4787 REMARK 3 S TENSOR REMARK 3 S11: -0.1026 S12: 0.3699 S13: 0.7653 REMARK 3 S21: 0.0639 S22: 0.1260 S23: 0.1974 REMARK 3 S31: -0.3785 S32: 0.1791 S33: -0.0590 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 260 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.0210 -8.0202 -27.6239 REMARK 3 T TENSOR REMARK 3 T11: 0.3879 T22: 0.4492 REMARK 3 T33: 0.4363 T12: 0.0015 REMARK 3 T13: -0.0304 T23: 0.1635 REMARK 3 L TENSOR REMARK 3 L11: 2.3512 L22: 0.6214 REMARK 3 L33: 1.5635 L12: 0.1881 REMARK 3 L13: -0.0584 L23: -0.3277 REMARK 3 S TENSOR REMARK 3 S11: -0.1068 S12: 0.9954 S13: 0.7514 REMARK 3 S21: -0.3957 S22: -0.0554 S23: 0.0721 REMARK 3 S31: -0.2737 S32: 0.5580 S33: 0.0982 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y7T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17776 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34200 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG1000, IMIDAZOLE, CALCIUM ACETATE, REMARK 280 PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.21350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.21350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.73550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.30950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.73550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.30950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.21350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.73550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.30950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.21350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.73550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.30950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 543 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 593 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 ASP B 5 REMARK 465 HIS B 6 REMARK 465 VAL B 7 REMARK 465 LYS B 8 REMARK 465 HIS B 296 REMARK 465 ASP B 297 REMARK 465 ASP B 298 REMARK 465 GLU B 299 REMARK 465 ALA B 300 REMARK 465 GLU B 301 REMARK 465 PRO B 302 REMARK 465 LEU B 303 REMARK 465 CYS B 304 REMARK 465 ARG B 305 REMARK 465 GLU B 306 REMARK 465 THR B 307 REMARK 465 ILE B 308 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 136 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 136 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 92 -65.65 -92.05 REMARK 500 MET B 137 -8.43 88.60 REMARK 500 SER B 140 -47.77 -130.46 REMARK 500 THR B 220 -53.38 -120.00 REMARK 500 ASP B 272 129.62 -36.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 134 NE2 REMARK 620 2 ASP B 136 OD1 88.4 REMARK 620 3 HIS B 211 NE2 91.6 88.2 REMARK 620 4 AKG B 403 O1 89.1 95.8 176.0 REMARK 620 5 AKG B 403 O5 92.5 179.0 92.3 83.7 REMARK 620 6 HOH B 501 O 178.9 92.4 89.2 90.1 86.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8R0 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG B 403 DBREF 5Y7T B 1 308 UNP Q5AR53 ASQJ_EMENI 109 416 SEQADV 5Y7T HIS B -6 UNP Q5AR53 EXPRESSION TAG SEQADV 5Y7T HIS B -5 UNP Q5AR53 EXPRESSION TAG SEQADV 5Y7T HIS B -4 UNP Q5AR53 EXPRESSION TAG SEQADV 5Y7T HIS B -3 UNP Q5AR53 EXPRESSION TAG SEQADV 5Y7T HIS B -2 UNP Q5AR53 EXPRESSION TAG SEQADV 5Y7T HIS B -1 UNP Q5AR53 EXPRESSION TAG SEQADV 5Y7T MET B 0 UNP Q5AR53 EXPRESSION TAG SEQRES 1 B 315 HIS HIS HIS HIS HIS HIS MET MET THR SER LYS ASP HIS SEQRES 2 B 315 VAL LYS SER GLN ILE PRO ARG LEU SER ALA ILE ASN ASP SEQRES 3 B 315 LEU HIS LYS ILE TRP PRO THR VAL GLU GLU HIS GLY ALA SEQRES 4 B 315 ALA ILE ILE GLU SER PHE LEU SER LEU ASP ILE VAL ARG SEQRES 5 B 315 ARG LEU ASN GLU GLU VAL ASP PRO PHE VAL LYS ILE GLU SEQRES 6 B 315 PRO ILE PRO ALA ALA LYS THR LYS ASP HIS PRO ASN HIS SEQRES 7 B 315 VAL LEU SER THR THR THR ARG LEU VAL ASN VAL LEU ALA SEQRES 8 B 315 PRO ILE SER LYS ALA TYR ARG GLU ASP VAL LEU ASN SER SEQRES 9 B 315 LYS VAL LEU HIS ARG ILE CYS SER ASP ALA PHE HIS VAL SEQRES 10 B 315 TYR GLY ASP TYR TRP VAL LEU MET GLY ALA VAL MET GLU SEQRES 11 B 315 LEU ALA PRO SER ASN PRO ALA GLN PRO LEU HIS ARG ASP SEQRES 12 B 315 MET ARG PHE SER HIS PRO ILE VAL GLU TYR LEU LYS PRO SEQRES 13 B 315 ASP ALA PRO ALA THR SER ILE ASN PHE LEU VAL ALA LEU SEQRES 14 B 315 SER PRO PHE THR ALA GLU ASN GLY ALA THR HIS VAL ILE SEQRES 15 B 315 LEU GLY SER HIS LYS TRP GLN ASN LEU SER ASN VAL SER SEQRES 16 B 315 MET ASP ALA THR VAL ARG ALA LEU MET ASN PRO GLY ASP SEQRES 17 B 315 ALA LEU LEU ILE THR ASP SER THR ILE HIS CYS GLY GLY SEQRES 18 B 315 ALA GLU THR THR GLY THR GLU THR ARG ARG LEU LEU THR SEQRES 19 B 315 ILE THR MET GLY ILE SER GLN LEU THR PRO LEU GLU SER SEQRES 20 B 315 ASN LEU ALA VAL PRO ARG PRO VAL ILE GLU SER LEU THR SEQRES 21 B 315 PRO LEU ALA GLN ARG LEU LEU GLY TRP ALA SER GLN ARG SEQRES 22 B 315 SER ALA ALA PRO ARG ASP ILE GLY LEU LEU THR ILE ARG SEQRES 23 B 315 GLY ASN SER ILE GLU LYS THR MET ASN LEU LYS ALA GLU SEQRES 24 B 315 GLN PRO LEU HIS ASP ASP GLU ALA GLU PRO LEU CYS ARG SEQRES 25 B 315 GLU THR ILE HET FE B 401 1 HET 8R0 B 402 37 HET AKG B 403 14 HETNAM FE FE (III) ION HETNAM 8R0 (3R)-4-METHYL-3-(PHENYLMETHYL)-1,3-DIHYDRO-1,4- HETNAM 2 8R0 BENZODIAZEPINE-2,5-DIONE HETNAM AKG 2-OXOGLUTARIC ACID FORMUL 2 FE FE 3+ FORMUL 3 8R0 C17 H16 N2 O2 FORMUL 4 AKG C5 H6 O5 FORMUL 5 HOH *94(H2 O) HELIX 1 AA1 ASP B 19 HIS B 21 5 3 HELIX 2 AA2 LYS B 22 GLY B 31 1 10 HELIX 3 AA3 SER B 40 ILE B 57 1 18 HELIX 4 AA4 SER B 87 ASP B 93 1 7 HELIX 5 AA5 SER B 97 HIS B 109 1 13 HELIX 6 AA6 HIS B 141 LEU B 147 5 7 HELIX 7 AA7 GLY B 177 TRP B 181 5 5 HELIX 8 AA8 SER B 188 THR B 192 5 5 HELIX 9 AA9 PRO B 245 GLU B 250 1 6 HELIX 10 AB1 THR B 253 LEU B 260 1 8 HELIX 11 AB2 SER B 282 ASN B 288 1 7 SHEET 1 AA1 7 ARG B 13 SER B 15 0 SHEET 2 AA1 7 ALA B 32 GLU B 36 1 O ILE B 34 N LEU B 14 SHEET 3 AA1 7 ALA B 202 THR B 206 -1 O ALA B 202 N ILE B 35 SHEET 4 AA1 7 SER B 155 ALA B 161 -1 N LEU B 159 O LEU B 203 SHEET 5 AA1 7 ARG B 223 ILE B 232 -1 O LEU B 226 N VAL B 160 SHEET 6 AA1 7 TYR B 114 LEU B 124 -1 N TRP B 115 O GLY B 231 SHEET 7 AA1 7 THR B 77 VAL B 80 -1 N VAL B 80 O VAL B 121 SHEET 1 AA2 3 VAL B 193 ARG B 194 0 SHEET 2 AA2 3 HIS B 173 VAL B 174 -1 N VAL B 174 O VAL B 193 SHEET 3 AA2 3 HIS B 211 CYS B 212 -1 O CYS B 212 N HIS B 173 LINK NE2 HIS B 134 FE FE B 401 1555 1555 2.26 LINK OD1 ASP B 136 FE FE B 401 1555 1555 2.16 LINK NE2 HIS B 211 FE FE B 401 1555 1555 2.21 LINK FE FE B 401 O1 AKG B 403 1555 1555 2.01 LINK FE FE B 401 O5 AKG B 403 1555 1555 2.22 LINK FE FE B 401 O HOH B 501 1555 1555 2.01 SITE 1 AC1 5 HIS B 134 ASP B 136 HIS B 211 AKG B 403 SITE 2 AC1 5 HOH B 501 SITE 1 AC2 14 ASN B 70 VAL B 72 LEU B 73 LEU B 79 SITE 2 AC2 14 MET B 118 PRO B 132 HIS B 134 ASP B 136 SITE 3 AC2 14 MET B 137 PHE B 139 THR B 227 AKG B 403 SITE 4 AC2 14 HOH B 512 HOH B 518 SITE 1 AC3 13 MET B 122 LEU B 124 GLN B 131 HIS B 134 SITE 2 AC3 13 ASP B 136 THR B 172 HIS B 211 GLY B 213 SITE 3 AC3 13 ARG B 223 LEU B 225 FE B 401 8R0 B 402 SITE 4 AC3 13 HOH B 501 CRYST1 73.471 118.619 66.427 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013611 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015054 0.00000