HEADER FLUORESCENT PROTEIN 21-AUG-17 5Y8Q TITLE ZSYELLOW AT PH 8.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GFP-LIKE FLUORESCENT CHROMOPROTEIN FP538; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ZFP538; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZOANTHUS SP.; SOURCE 3 ORGANISM_COMMON: GREEN POLYP; SOURCE 4 ORGANISM_TAXID: 105402; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ZSYELLOW, PH, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.E.BAE,I.J.KIM,K.H.NAM REVDAT 3 22-NOV-23 5Y8Q 1 REMARK REVDAT 2 28-NOV-18 5Y8Q 1 JRNL REVDAT 1 13-SEP-17 5Y8Q 0 JRNL AUTH J.E.BAE,I.J.KIM,K.H.NAM JRNL TITL DISRUPTION OF THE HYDROGEN BONDING NETWORK DETERMINES THE JRNL TITL 2 PH-INDUCED NON-FLUORESCENT STATE OF THE FLUORESCENT PROTEIN JRNL TITL 3 ZSYELLOW BY PROTONATION OF GLU221. JRNL REF BIOCHEM. BIOPHYS. RES. V. 493 562 2017 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 28867188 JRNL DOI 10.1016/J.BBRC.2017.08.152 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 8909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 455 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 622 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.58000 REMARK 3 B22 (A**2) : -0.74000 REMARK 3 B33 (A**2) : -0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.460 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.265 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.707 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3704 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3478 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4986 ; 1.767 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8054 ; 0.785 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 441 ; 7.443 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;36.363 ;24.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 643 ;17.895 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.611 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 513 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4125 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 861 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1784 ; 1.726 ; 2.729 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1783 ; 1.725 ; 2.729 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2217 ; 2.878 ; 4.085 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2218 ; 2.877 ; 4.085 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1918 ; 1.852 ; 2.903 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1919 ; 1.852 ; 2.903 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2770 ; 3.130 ; 4.268 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4066 ; 5.121 ;21.506 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4067 ; 5.120 ;21.510 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5Y8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004840. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9367 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2OGR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 24.20500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.84000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 24.20500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.84000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 SER A 4 REMARK 465 ALA A 231 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 ALA B 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 207 NH2 ARG A 209 1.87 REMARK 500 OD2 ASP A 164 OH TYR B 168 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 64 O - C - N ANGL. DEV. = -10.2 DEGREES REMARK 500 PRO A 227 C - N - CD ANGL. DEV. = 12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 213 -60.24 -91.27 REMARK 500 ASN B 144 141.10 -170.96 REMARK 500 VAL B 190 109.96 -49.92 REMARK 500 ASP B 211 -170.57 -170.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE LYS 66, TYR 67 AND GLY 68 ARE MODIFIED TO MAKE CHROMOPHORE REMARK 999 (CH7 66). ZSYELLOW CHROMOPHORE HAS A THREE-RING FEATURE BY HETERO- REMARK 999 CYCLIZATION OF THE LYS66 RESIDUE, RESULTING IN BACKBONE CLEAVAGE REMARK 999 BETWEEN PHE65 AND LYS66. DBREF 5Y8Q A 1 231 UNP Q9U6Y4 GFPL2_ZOASP 1 231 DBREF 5Y8Q B 1 231 UNP Q9U6Y4 GFPL2_ZOASP 1 231 SEQADV 5Y8Q GLY A -2 UNP Q9U6Y4 EXPRESSION TAG SEQADV 5Y8Q SER A -1 UNP Q9U6Y4 EXPRESSION TAG SEQADV 5Y8Q HIS A 0 UNP Q9U6Y4 EXPRESSION TAG SEQADV 5Y8Q CH7 A 66 UNP Q9U6Y4 LYS 66 CHROMOPHORE SEQADV 5Y8Q CH7 A 66 UNP Q9U6Y4 TYR 67 CHROMOPHORE SEQADV 5Y8Q CH7 A 66 UNP Q9U6Y4 GLY 68 CHROMOPHORE SEQADV 5Y8Q VAL A 129 UNP Q9U6Y4 MET 129 ENGINEERED MUTATION SEQADV 5Y8Q GLY B -2 UNP Q9U6Y4 EXPRESSION TAG SEQADV 5Y8Q SER B -1 UNP Q9U6Y4 EXPRESSION TAG SEQADV 5Y8Q HIS B 0 UNP Q9U6Y4 EXPRESSION TAG SEQADV 5Y8Q CH7 B 66 UNP Q9U6Y4 LYS 66 CHROMOPHORE SEQADV 5Y8Q CH7 B 66 UNP Q9U6Y4 TYR 67 CHROMOPHORE SEQADV 5Y8Q CH7 B 66 UNP Q9U6Y4 GLY 68 CHROMOPHORE SEQADV 5Y8Q VAL B 129 UNP Q9U6Y4 MET 129 ENGINEERED MUTATION SEQRES 1 A 232 GLY SER HIS MET ALA HIS SER LYS HIS GLY LEU LYS GLU SEQRES 2 A 232 GLU MET THR MET LYS TYR HIS MET GLU GLY CYS VAL ASN SEQRES 3 A 232 GLY HIS LYS PHE VAL ILE THR GLY GLU GLY ILE GLY TYR SEQRES 4 A 232 PRO PHE LYS GLY LYS GLN THR ILE ASN LEU CYS VAL ILE SEQRES 5 A 232 GLU GLY GLY PRO LEU PRO PHE SER GLU ASP ILE LEU SER SEQRES 6 A 232 ALA GLY NFA CH7 ASP ARG ILE PHE THR GLU TYR PRO GLN SEQRES 7 A 232 ASP ILE VAL ASP TYR PHE LYS ASN SER CYS PRO ALA GLY SEQRES 8 A 232 TYR THR TRP GLY ARG SER PHE LEU PHE GLU ASP GLY ALA SEQRES 9 A 232 VAL CYS ILE CYS ASN VAL ASP ILE THR VAL SER VAL LYS SEQRES 10 A 232 GLU ASN CYS ILE TYR HIS LYS SER ILE PHE ASN GLY VAL SEQRES 11 A 232 ASN PHE PRO ALA ASP GLY PRO VAL MET LYS LYS MET THR SEQRES 12 A 232 THR ASN TRP GLU ALA SER CYS GLU LYS ILE MET PRO VAL SEQRES 13 A 232 PRO LYS GLN GLY ILE LEU LYS GLY ASP VAL SER MET TYR SEQRES 14 A 232 LEU LEU LEU LYS ASP GLY GLY ARG TYR ARG CYS GLN PHE SEQRES 15 A 232 ASP THR VAL TYR LYS ALA LYS SER VAL PRO SER LYS MET SEQRES 16 A 232 PRO GLU TRP HIS PHE ILE GLN HIS LYS LEU LEU ARG GLU SEQRES 17 A 232 ASP ARG SER ASP ALA LYS ASN GLN LYS TRP GLN LEU THR SEQRES 18 A 232 GLU HIS ALA ILE ALA PHE PRO SER ALA LEU ALA SEQRES 1 B 232 GLY SER HIS MET ALA HIS SER LYS HIS GLY LEU LYS GLU SEQRES 2 B 232 GLU MET THR MET LYS TYR HIS MET GLU GLY CYS VAL ASN SEQRES 3 B 232 GLY HIS LYS PHE VAL ILE THR GLY GLU GLY ILE GLY TYR SEQRES 4 B 232 PRO PHE LYS GLY LYS GLN THR ILE ASN LEU CYS VAL ILE SEQRES 5 B 232 GLU GLY GLY PRO LEU PRO PHE SER GLU ASP ILE LEU SER SEQRES 6 B 232 ALA GLY NFA CH7 ASP ARG ILE PHE THR GLU TYR PRO GLN SEQRES 7 B 232 ASP ILE VAL ASP TYR PHE LYS ASN SER CYS PRO ALA GLY SEQRES 8 B 232 TYR THR TRP GLY ARG SER PHE LEU PHE GLU ASP GLY ALA SEQRES 9 B 232 VAL CYS ILE CYS ASN VAL ASP ILE THR VAL SER VAL LYS SEQRES 10 B 232 GLU ASN CYS ILE TYR HIS LYS SER ILE PHE ASN GLY VAL SEQRES 11 B 232 ASN PHE PRO ALA ASP GLY PRO VAL MET LYS LYS MET THR SEQRES 12 B 232 THR ASN TRP GLU ALA SER CYS GLU LYS ILE MET PRO VAL SEQRES 13 B 232 PRO LYS GLN GLY ILE LEU LYS GLY ASP VAL SER MET TYR SEQRES 14 B 232 LEU LEU LEU LYS ASP GLY GLY ARG TYR ARG CYS GLN PHE SEQRES 15 B 232 ASP THR VAL TYR LYS ALA LYS SER VAL PRO SER LYS MET SEQRES 16 B 232 PRO GLU TRP HIS PHE ILE GLN HIS LYS LEU LEU ARG GLU SEQRES 17 B 232 ASP ARG SER ASP ALA LYS ASN GLN LYS TRP GLN LEU THR SEQRES 18 B 232 GLU HIS ALA ILE ALA PHE PRO SER ALA LEU ALA MODRES 5Y8Q NFA A 65 PHE MODIFIED RESIDUE MODRES 5Y8Q CH7 A 66 GLY CHROMOPHORE MODRES 5Y8Q NFA B 65 PHE MODIFIED RESIDUE MODRES 5Y8Q CH7 B 66 GLY CHROMOPHORE HET NFA A 65 12 HET CH7 A 66 23 HET NFA B 65 12 HET CH7 B 66 23 HETNAM NFA PHENYLALANINE AMIDE HETNAM CH7 [(4Z)-4-(4-HYDROXYBENZYLIDENE)-5-OXO-2-(3,4,5,6- HETNAM 2 CH7 TETRAHYDROPYRIDIN-2-YL)-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CH7 YL]ACETIC ACID HETSYN CH7 CHROMOPHORE (LYS-TYR-GLY) FORMUL 1 NFA 2(C9 H12 N2 O) FORMUL 1 CH7 2(C17 H17 N3 O4) FORMUL 3 HOH *56(H2 O) HELIX 1 AA1 SER A 57 NFA A 65 5 9 HELIX 2 AA2 ASP A 81 CYS A 87 1 7 HELIX 3 AA3 PRO B 37 LYS B 39 5 3 HELIX 4 AA4 SER B 57 NFA B 65 5 9 HELIX 5 AA5 ASP B 81 SER B 86 1 6 SHEET 1 AA113 THR A 142 TRP A 145 0 SHEET 2 AA113 ILE A 160 LEU A 171 -1 O LEU A 170 N ASN A 144 SHEET 3 AA113 ARG A 176 ALA A 187 -1 O THR A 183 N GLY A 163 SHEET 4 AA113 TYR A 91 PHE A 99 -1 N LEU A 98 O GLN A 180 SHEET 5 AA113 VAL A 104 SER A 114 -1 O ILE A 111 N TYR A 91 SHEET 6 AA113 CYS A 119 VAL A 129 -1 O CYS A 119 N SER A 114 SHEET 7 AA113 MET A 12 VAL A 22 1 N HIS A 17 O SER A 124 SHEET 8 AA113 HIS A 25 GLY A 35 -1 O HIS A 25 N VAL A 22 SHEET 9 AA113 LYS A 41 GLU A 50 -1 O ILE A 49 N VAL A 28 SHEET 10 AA113 LYS A 216 PHE A 226 -1 O TRP A 217 N LEU A 46 SHEET 11 AA113 HIS A 198 ASP A 208 -1 N PHE A 199 O PHE A 226 SHEET 12 AA113 SER A 148 VAL A 155 -1 N GLU A 150 O ILE A 200 SHEET 13 AA113 ILE A 160 LEU A 171 -1 O LYS A 162 N MET A 153 SHEET 1 AA213 THR B 142 TRP B 145 0 SHEET 2 AA213 ILE B 160 LEU B 171 -1 O LEU B 170 N THR B 143 SHEET 3 AA213 ARG B 176 ALA B 187 -1 O THR B 183 N GLY B 163 SHEET 4 AA213 TYR B 91 PHE B 99 -1 N LEU B 98 O GLN B 180 SHEET 5 AA213 VAL B 104 SER B 114 -1 O ILE B 111 N TYR B 91 SHEET 6 AA213 CYS B 119 VAL B 129 -1 O TYR B 121 N THR B 112 SHEET 7 AA213 MET B 12 VAL B 22 1 N HIS B 17 O SER B 124 SHEET 8 AA213 HIS B 25 TYR B 36 -1 O ILE B 29 N MET B 18 SHEET 9 AA213 LYS B 41 GLU B 50 -1 O LYS B 41 N TYR B 36 SHEET 10 AA213 LYS B 216 PHE B 226 -1 O TRP B 217 N LEU B 46 SHEET 11 AA213 HIS B 198 ASP B 208 -1 N GLN B 201 O ILE B 224 SHEET 12 AA213 SER B 148 VAL B 155 -1 N GLU B 150 O ILE B 200 SHEET 13 AA213 ILE B 160 LEU B 171 -1 O LYS B 162 N MET B 153 LINK C GLY A 64 N NFA A 65 1555 1555 1.28 LINK C3 CH7 A 66 N ASP A 69 1555 1555 1.29 LINK C GLY B 64 N NFA B 65 1555 1555 1.28 LINK C3 CH7 B 66 N ASP B 69 1555 1555 1.30 CISPEP 1 GLY A 52 PRO A 53 0 -8.65 CISPEP 2 CYS A 87 PRO A 88 0 5.32 CISPEP 3 ALA A 229 LEU A 230 0 -21.60 CISPEP 4 GLY B 52 PRO B 53 0 0.04 CISPEP 5 CYS B 87 PRO B 88 0 7.32 CRYST1 48.410 72.883 123.680 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020657 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008085 0.00000