HEADER TRANSCRIPTION 28-AUG-17 5Y9S TITLE CRYSTAL STRUCTURE OF VV2_1132, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: VV2_1132; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS CMCP6; SOURCE 3 ORGANISM_TAXID: 216895; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS LYSR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.JANG,S.HONG,I.JO,J.AHN,N.C.HA REVDAT 5 27-MAR-24 5Y9S 1 REMARK REVDAT 4 27-NOV-19 5Y9S 1 REMARK REVDAT 3 23-OCT-19 5Y9S 1 REMARK REVDAT 2 09-MAY-18 5Y9S 1 JRNL REVDAT 1 28-MAR-18 5Y9S 0 JRNL AUTH Y.JANG,G.CHOI,S.HONG,I.JO,J.AHN,S.H.CHOI,N.C.HA JRNL TITL A NOVEL TETRAMERIC ASSEMBLY CONFIGURATION IN VV2_1132, A JRNL TITL 2 LYSR-TYPE TRANSCRIPTIONAL REGULATOR INVIBRIO VULNIFICUS JRNL REF MOL. CELLS V. 41 301 2018 JRNL REFN ISSN 0219-1032 JRNL PMID 29487273 JRNL DOI 10.14348/MOLCELLS.2018.2190 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.520 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.7 REMARK 3 NUMBER OF REFLECTIONS : 65417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3308 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7791 - 6.3381 1.00 3235 164 0.1795 0.2432 REMARK 3 2 6.3381 - 5.0326 1.00 3080 182 0.1855 0.2378 REMARK 3 3 5.0326 - 4.3970 1.00 3010 177 0.1477 0.1962 REMARK 3 4 4.3970 - 3.9952 1.00 3035 168 0.1611 0.2222 REMARK 3 5 3.9952 - 3.7090 1.00 3009 150 0.1694 0.2223 REMARK 3 6 3.7090 - 3.4904 1.00 3012 152 0.1880 0.2636 REMARK 3 7 3.4904 - 3.3156 0.99 2975 155 0.2085 0.2829 REMARK 3 8 3.3156 - 3.1713 0.99 2954 155 0.2196 0.2692 REMARK 3 9 3.1713 - 3.0493 0.99 2928 141 0.2240 0.2597 REMARK 3 10 3.0493 - 2.9441 0.97 2941 140 0.2281 0.3146 REMARK 3 11 2.9441 - 2.8520 0.97 2871 162 0.2225 0.2997 REMARK 3 12 2.8520 - 2.7705 0.96 2800 160 0.2262 0.2918 REMARK 3 13 2.7705 - 2.6976 0.92 2759 138 0.2247 0.3117 REMARK 3 14 2.6976 - 2.6318 0.93 2715 171 0.2259 0.3022 REMARK 3 15 2.6318 - 2.5720 0.89 2673 148 0.2301 0.3098 REMARK 3 16 2.5720 - 2.5172 0.90 2612 145 0.2368 0.3239 REMARK 3 17 2.5172 - 2.4669 0.87 2586 142 0.2484 0.2932 REMARK 3 18 2.4669 - 2.4203 0.87 2559 122 0.2541 0.3196 REMARK 3 19 2.4203 - 2.3771 0.81 2403 135 0.2573 0.3264 REMARK 3 20 2.3771 - 2.3368 0.79 2317 108 0.2499 0.3025 REMARK 3 21 2.3368 - 2.2991 0.71 2116 104 0.2493 0.3210 REMARK 3 22 2.2991 - 2.2637 0.59 1745 96 0.2507 0.2984 REMARK 3 23 2.2637 - 2.2305 0.41 1185 68 0.2317 0.2998 REMARK 3 24 2.2305 - 2.1990 0.20 589 25 0.2249 0.3752 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 9290 REMARK 3 ANGLE : 0.955 12637 REMARK 3 CHIRALITY : 0.051 1491 REMARK 3 PLANARITY : 0.006 1582 REMARK 3 DIHEDRAL : 6.364 5579 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 31.1156 49.4980 1.8626 REMARK 3 T TENSOR REMARK 3 T11: 0.0694 T22: 0.1651 REMARK 3 T33: 0.0873 T12: 0.0013 REMARK 3 T13: 0.0066 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.4734 L22: 0.8822 REMARK 3 L33: 0.5396 L12: 0.2304 REMARK 3 L13: 0.1147 L23: -0.0771 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: 0.0173 S13: -0.0211 REMARK 3 S21: -0.0251 S22: 0.0627 S23: 0.0465 REMARK 3 S31: 0.0310 S32: -0.0218 S33: -0.0332 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y9S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801, 1.0082 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 V712 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70737 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.199 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 50.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 2.50000 REMARK 200 R SYM FOR SHELL (I) : 0.44200 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX (1.11.1_2575) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOL (PH 7.6), 0.9M AMMONIUM REMARK 280 PHOSPHATE DIBASIC, 0.2M NABR, 2MM TCEP, PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 56.83450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 110.94750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 56.83450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 110.94750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 SER A 156 REMARK 465 ALA A 157 REMARK 465 MET A 158 REMARK 465 ARG A 159 REMARK 465 PRO A 160 REMARK 465 SER A 161 REMARK 465 LEU A 162 REMARK 465 SER A 163 REMARK 465 GLU A 188 REMARK 465 SER A 189 REMARK 465 LEU A 190 REMARK 465 LYS A 191 REMARK 465 ALA A 192 REMARK 465 ASP A 193 REMARK 465 GLN A 194 REMARK 465 THR A 195 REMARK 465 LYS A 216 REMARK 465 THR A 217 REMARK 465 LEU A 218 REMARK 465 PRO A 219 REMARK 465 LEU A 220 REMARK 465 THR A 221 REMARK 465 SER A 300 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 LEU B 102 REMARK 465 HIS B 103 REMARK 465 THR B 104 REMARK 465 LEU B 105 REMARK 465 ILE B 155 REMARK 465 SER B 156 REMARK 465 ALA B 157 REMARK 465 MET B 158 REMARK 465 ARG B 159 REMARK 465 PRO B 160 REMARK 465 SER B 161 REMARK 465 LEU B 162 REMARK 465 SER B 163 REMARK 465 LEU B 164 REMARK 465 GLU B 165 REMARK 465 SER B 189 REMARK 465 LEU B 190 REMARK 465 LYS B 191 REMARK 465 ALA B 192 REMARK 465 ASP B 193 REMARK 465 THR B 217 REMARK 465 LEU B 218 REMARK 465 PRO B 219 REMARK 465 LEU B 220 REMARK 465 LYS B 299 REMARK 465 SER B 300 REMARK 465 GLY C -3 REMARK 465 ALA C -2 REMARK 465 MET C -1 REMARK 465 ALA C 0 REMARK 465 GLU C 188 REMARK 465 SER C 189 REMARK 465 LEU C 190 REMARK 465 LYS C 191 REMARK 465 ALA C 192 REMARK 465 ASP C 193 REMARK 465 GLN C 194 REMARK 465 LYS C 299 REMARK 465 SER C 300 REMARK 465 GLY D -3 REMARK 465 ALA D -2 REMARK 465 MET D -1 REMARK 465 ALA D 0 REMARK 465 MET D 1 REMARK 465 ASN D 2 REMARK 465 LYS D 191 REMARK 465 ALA D 192 REMARK 465 ASP D 193 REMARK 465 LYS D 299 REMARK 465 SER D 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 175 OD1 ASP B 276 2.09 REMARK 500 N MET A 1 O HOH A 501 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 109 -56.07 -130.85 REMARK 500 LEU A 133 156.85 -47.96 REMARK 500 ARG A 185 1.58 -63.58 REMARK 500 LYS A 269 3.77 -60.76 REMARK 500 GLN B 88 152.16 177.50 REMARK 500 SER B 90 84.16 -64.05 REMARK 500 LEU B 91 70.20 -108.19 REMARK 500 SER B 117 46.13 -149.44 REMARK 500 LEU B 133 -163.07 -105.43 REMARK 500 GLU B 176 -163.95 -127.70 REMARK 500 HIS B 204 58.41 -116.02 REMARK 500 HIS B 250 -6.90 -54.79 REMARK 500 HIS B 286 58.86 -102.05 REMARK 500 ASN C 2 44.13 -151.77 REMARK 500 ASN C 3 58.85 -119.27 REMARK 500 PHE C 30 32.26 71.06 REMARK 500 PRO C 58 -166.70 -71.41 REMARK 500 VAL C 132 -13.42 -145.44 REMARK 500 ASN C 154 41.93 -89.42 REMARK 500 GLU C 267 32.21 -93.09 REMARK 500 GLN C 268 64.66 -119.99 REMARK 500 GLU D 18 -72.07 -75.39 REMARK 500 SER D 34 -73.83 -52.67 REMARK 500 LEU D 109 -60.83 -109.45 REMARK 500 HIS D 145 19.35 53.00 REMARK 500 PRO D 219 36.41 -77.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR C 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR D 402 DBREF 5Y9S A -3 300 PDB 5Y9S 5Y9S -3 300 DBREF 5Y9S B -3 300 PDB 5Y9S 5Y9S -3 300 DBREF 5Y9S C -3 300 PDB 5Y9S 5Y9S -3 300 DBREF 5Y9S D -3 300 PDB 5Y9S 5Y9S -3 300 SEQRES 1 A 304 GLY ALA MET ALA MET ASN ASN PRO LEU GLU PHE LYS TRP SEQRES 2 A 304 LEU GLU ASP PHE LEU SER LEU MET GLU LEU GLY ASN PHE SEQRES 3 A 304 SER ALA ALA ALA LYS ALA ARG PHE VAL THR GLN SER ALA SEQRES 4 A 304 PHE SER ARG ARG ILE GLN ALA LEU GLU VAL TRP ILE GLY SEQRES 5 A 304 VAL PRO LEU PHE ASP ARG THR SER TYR PRO ILE THR LEU SEQRES 6 A 304 THR GLU HIS GLY GLN LYS PHE VAL PRO TYR ALA GLU ASN SEQRES 7 A 304 LEU LEU ASN GLN VAL LYS VAL THR LYS GLU ASP PHE ALA SEQRES 8 A 304 GLN ALA SER LEU LYS THR ASP HIS THR VAL ARG ILE VAL SEQRES 9 A 304 CYS LEU HIS THR LEU ALA VAL ASN LEU LEU PRO LYS LEU SEQRES 10 A 304 PHE LEU GLN SER ALA GLU ALA LEU SER HIS LEU ASN LEU SEQRES 11 A 304 SER VAL THR PRO SER VAL LEU GLY ILE ASP ALA HIS PHE SEQRES 12 A 304 GLN MET LEU GLU ASP HIS SER THR ASP LEU LEU PHE THR SEQRES 13 A 304 TYR ASN ILE SER ALA MET ARG PRO SER LEU SER LEU GLU SEQRES 14 A 304 ASP LYS LEU GLU LYS CYS VAL ILE HIS SER GLU LYS VAL SEQRES 15 A 304 VAL PRO VAL VAL ALA PRO ARG LEU LEU GLU SER LEU LYS SEQRES 16 A 304 ALA ASP GLN THR ILE PRO TYR LEU SER TYR SER GLU HIS SEQRES 17 A 304 THR PHE LEU SER LYS VAL VAL GLU PRO VAL LEU LYS THR SEQRES 18 A 304 LEU PRO LEU THR LEU LYS PRO VAL PHE GLU THR THR LEU SEQRES 19 A 304 SER GLU SER LEU VAL LYS MET ALA ILE GLY GLY ALA GLY SEQRES 20 A 304 VAL ALA TRP VAL PRO MET HIS VAL ILE GLU GLU GLU LEU SEQRES 21 A 304 ALA GLN HIS ARG LEU VAL ILE ALA PHE GLU GLU GLN LYS SEQRES 22 A 304 GLU TRP GLN ILE PRO ILE ASP ILE LEU CYS TYR ARG SER SEQRES 23 A 304 THR THR ASN HIS ARG ALA ALA VAL ASP GLN PHE TRP GLN SEQRES 24 A 304 GLU ILE ASP LYS SER SEQRES 1 B 304 GLY ALA MET ALA MET ASN ASN PRO LEU GLU PHE LYS TRP SEQRES 2 B 304 LEU GLU ASP PHE LEU SER LEU MET GLU LEU GLY ASN PHE SEQRES 3 B 304 SER ALA ALA ALA LYS ALA ARG PHE VAL THR GLN SER ALA SEQRES 4 B 304 PHE SER ARG ARG ILE GLN ALA LEU GLU VAL TRP ILE GLY SEQRES 5 B 304 VAL PRO LEU PHE ASP ARG THR SER TYR PRO ILE THR LEU SEQRES 6 B 304 THR GLU HIS GLY GLN LYS PHE VAL PRO TYR ALA GLU ASN SEQRES 7 B 304 LEU LEU ASN GLN VAL LYS VAL THR LYS GLU ASP PHE ALA SEQRES 8 B 304 GLN ALA SER LEU LYS THR ASP HIS THR VAL ARG ILE VAL SEQRES 9 B 304 CYS LEU HIS THR LEU ALA VAL ASN LEU LEU PRO LYS LEU SEQRES 10 B 304 PHE LEU GLN SER ALA GLU ALA LEU SER HIS LEU ASN LEU SEQRES 11 B 304 SER VAL THR PRO SER VAL LEU GLY ILE ASP ALA HIS PHE SEQRES 12 B 304 GLN MET LEU GLU ASP HIS SER THR ASP LEU LEU PHE THR SEQRES 13 B 304 TYR ASN ILE SER ALA MET ARG PRO SER LEU SER LEU GLU SEQRES 14 B 304 ASP LYS LEU GLU LYS CYS VAL ILE HIS SER GLU LYS VAL SEQRES 15 B 304 VAL PRO VAL VAL ALA PRO ARG LEU LEU GLU SER LEU LYS SEQRES 16 B 304 ALA ASP GLN THR ILE PRO TYR LEU SER TYR SER GLU HIS SEQRES 17 B 304 THR PHE LEU SER LYS VAL VAL GLU PRO VAL LEU LYS THR SEQRES 18 B 304 LEU PRO LEU THR LEU LYS PRO VAL PHE GLU THR THR LEU SEQRES 19 B 304 SER GLU SER LEU VAL LYS MET ALA ILE GLY GLY ALA GLY SEQRES 20 B 304 VAL ALA TRP VAL PRO MET HIS VAL ILE GLU GLU GLU LEU SEQRES 21 B 304 ALA GLN HIS ARG LEU VAL ILE ALA PHE GLU GLU GLN LYS SEQRES 22 B 304 GLU TRP GLN ILE PRO ILE ASP ILE LEU CYS TYR ARG SER SEQRES 23 B 304 THR THR ASN HIS ARG ALA ALA VAL ASP GLN PHE TRP GLN SEQRES 24 B 304 GLU ILE ASP LYS SER SEQRES 1 C 304 GLY ALA MET ALA MET ASN ASN PRO LEU GLU PHE LYS TRP SEQRES 2 C 304 LEU GLU ASP PHE LEU SER LEU MET GLU LEU GLY ASN PHE SEQRES 3 C 304 SER ALA ALA ALA LYS ALA ARG PHE VAL THR GLN SER ALA SEQRES 4 C 304 PHE SER ARG ARG ILE GLN ALA LEU GLU VAL TRP ILE GLY SEQRES 5 C 304 VAL PRO LEU PHE ASP ARG THR SER TYR PRO ILE THR LEU SEQRES 6 C 304 THR GLU HIS GLY GLN LYS PHE VAL PRO TYR ALA GLU ASN SEQRES 7 C 304 LEU LEU ASN GLN VAL LYS VAL THR LYS GLU ASP PHE ALA SEQRES 8 C 304 GLN ALA SER LEU LYS THR ASP HIS THR VAL ARG ILE VAL SEQRES 9 C 304 CYS LEU HIS THR LEU ALA VAL ASN LEU LEU PRO LYS LEU SEQRES 10 C 304 PHE LEU GLN SER ALA GLU ALA LEU SER HIS LEU ASN LEU SEQRES 11 C 304 SER VAL THR PRO SER VAL LEU GLY ILE ASP ALA HIS PHE SEQRES 12 C 304 GLN MET LEU GLU ASP HIS SER THR ASP LEU LEU PHE THR SEQRES 13 C 304 TYR ASN ILE SER ALA MET ARG PRO SER LEU SER LEU GLU SEQRES 14 C 304 ASP LYS LEU GLU LYS CYS VAL ILE HIS SER GLU LYS VAL SEQRES 15 C 304 VAL PRO VAL VAL ALA PRO ARG LEU LEU GLU SER LEU LYS SEQRES 16 C 304 ALA ASP GLN THR ILE PRO TYR LEU SER TYR SER GLU HIS SEQRES 17 C 304 THR PHE LEU SER LYS VAL VAL GLU PRO VAL LEU LYS THR SEQRES 18 C 304 LEU PRO LEU THR LEU LYS PRO VAL PHE GLU THR THR LEU SEQRES 19 C 304 SER GLU SER LEU VAL LYS MET ALA ILE GLY GLY ALA GLY SEQRES 20 C 304 VAL ALA TRP VAL PRO MET HIS VAL ILE GLU GLU GLU LEU SEQRES 21 C 304 ALA GLN HIS ARG LEU VAL ILE ALA PHE GLU GLU GLN LYS SEQRES 22 C 304 GLU TRP GLN ILE PRO ILE ASP ILE LEU CYS TYR ARG SER SEQRES 23 C 304 THR THR ASN HIS ARG ALA ALA VAL ASP GLN PHE TRP GLN SEQRES 24 C 304 GLU ILE ASP LYS SER SEQRES 1 D 304 GLY ALA MET ALA MET ASN ASN PRO LEU GLU PHE LYS TRP SEQRES 2 D 304 LEU GLU ASP PHE LEU SER LEU MET GLU LEU GLY ASN PHE SEQRES 3 D 304 SER ALA ALA ALA LYS ALA ARG PHE VAL THR GLN SER ALA SEQRES 4 D 304 PHE SER ARG ARG ILE GLN ALA LEU GLU VAL TRP ILE GLY SEQRES 5 D 304 VAL PRO LEU PHE ASP ARG THR SER TYR PRO ILE THR LEU SEQRES 6 D 304 THR GLU HIS GLY GLN LYS PHE VAL PRO TYR ALA GLU ASN SEQRES 7 D 304 LEU LEU ASN GLN VAL LYS VAL THR LYS GLU ASP PHE ALA SEQRES 8 D 304 GLN ALA SER LEU LYS THR ASP HIS THR VAL ARG ILE VAL SEQRES 9 D 304 CYS LEU HIS THR LEU ALA VAL ASN LEU LEU PRO LYS LEU SEQRES 10 D 304 PHE LEU GLN SER ALA GLU ALA LEU SER HIS LEU ASN LEU SEQRES 11 D 304 SER VAL THR PRO SER VAL LEU GLY ILE ASP ALA HIS PHE SEQRES 12 D 304 GLN MET LEU GLU ASP HIS SER THR ASP LEU LEU PHE THR SEQRES 13 D 304 TYR ASN ILE SER ALA MET ARG PRO SER LEU SER LEU GLU SEQRES 14 D 304 ASP LYS LEU GLU LYS CYS VAL ILE HIS SER GLU LYS VAL SEQRES 15 D 304 VAL PRO VAL VAL ALA PRO ARG LEU LEU GLU SER LEU LYS SEQRES 16 D 304 ALA ASP GLN THR ILE PRO TYR LEU SER TYR SER GLU HIS SEQRES 17 D 304 THR PHE LEU SER LYS VAL VAL GLU PRO VAL LEU LYS THR SEQRES 18 D 304 LEU PRO LEU THR LEU LYS PRO VAL PHE GLU THR THR LEU SEQRES 19 D 304 SER GLU SER LEU VAL LYS MET ALA ILE GLY GLY ALA GLY SEQRES 20 D 304 VAL ALA TRP VAL PRO MET HIS VAL ILE GLU GLU GLU LEU SEQRES 21 D 304 ALA GLN HIS ARG LEU VAL ILE ALA PHE GLU GLU GLN LYS SEQRES 22 D 304 GLU TRP GLN ILE PRO ILE ASP ILE LEU CYS TYR ARG SER SEQRES 23 D 304 THR THR ASN HIS ARG ALA ALA VAL ASP GLN PHE TRP GLN SEQRES 24 D 304 GLU ILE ASP LYS SER HET BR A 401 1 HET BR A 402 1 HET BR B 401 1 HET BR C 401 1 HET BR C 402 1 HET BR C 403 1 HET BR C 404 1 HET BR D 401 1 HET BR D 402 1 HETNAM BR BROMIDE ION FORMUL 5 BR 9(BR 1-) FORMUL 14 HOH *134(H2 O) HELIX 1 AA1 GLU A 6 GLY A 20 1 15 HELIX 2 AA2 ASN A 21 ARG A 29 1 9 HELIX 3 AA3 THR A 32 GLY A 48 1 17 HELIX 4 AA4 THR A 62 ALA A 87 1 26 HELIX 5 AA5 LEU A 102 LEU A 109 1 8 HELIX 6 AA6 LEU A 109 SER A 117 1 9 HELIX 7 AA7 GLY A 134 ASP A 144 1 11 HELIX 8 AA8 THR A 205 LEU A 215 1 11 HELIX 9 AA9 LEU A 230 GLY A 240 1 11 HELIX 10 AB1 ILE A 252 GLN A 258 1 7 HELIX 11 AB2 GLN A 268 GLN A 272 5 5 HELIX 12 AB3 ARG A 287 LYS A 299 1 13 HELIX 13 AB4 PHE B 7 GLY B 20 1 14 HELIX 14 AB5 ASN B 21 ARG B 29 1 9 HELIX 15 AB6 THR B 32 GLY B 48 1 17 HELIX 16 AB7 THR B 62 ALA B 87 1 26 HELIX 17 AB8 ASN B 108 GLN B 116 1 9 HELIX 18 AB9 GLY B 134 ASP B 144 1 11 HELIX 19 AC1 THR B 205 LYS B 216 1 12 HELIX 20 AC2 LEU B 230 GLY B 240 1 11 HELIX 21 AC3 ILE B 252 GLN B 258 1 7 HELIX 22 AC4 ARG B 287 ASP B 298 1 12 HELIX 23 AC5 PHE C 7 GLY C 20 1 14 HELIX 24 AC6 ASN C 21 ARG C 29 1 9 HELIX 25 AC7 THR C 32 GLY C 48 1 17 HELIX 26 AC8 THR C 62 GLN C 88 1 27 HELIX 27 AC9 ALA C 89 LEU C 91 5 3 HELIX 28 AD1 LEU C 102 ASN C 108 1 7 HELIX 29 AD2 ASN C 108 SER C 117 1 10 HELIX 30 AD3 SER C 117 SER C 122 1 6 HELIX 31 AD4 GLY C 134 ASP C 144 1 11 HELIX 32 AD5 ILE C 155 ARG C 159 5 5 HELIX 33 AD6 SER C 161 ASP C 166 5 6 HELIX 34 AD7 THR C 205 THR C 217 1 13 HELIX 35 AD8 LEU C 230 GLY C 240 1 11 HELIX 36 AD9 ILE C 252 GLN C 258 1 7 HELIX 37 AE1 GLN C 268 GLN C 272 5 5 HELIX 38 AE2 ARG C 287 ASP C 298 1 12 HELIX 39 AE3 GLU D 6 LEU D 19 1 14 HELIX 40 AE4 ASN D 21 ARG D 29 1 9 HELIX 41 AE5 THR D 32 GLY D 48 1 17 HELIX 42 AE6 THR D 62 ALA D 87 1 26 HELIX 43 AE7 LEU D 102 LEU D 109 1 8 HELIX 44 AE8 LEU D 109 SER D 117 1 9 HELIX 45 AE9 SER D 117 SER D 122 1 6 HELIX 46 AF1 GLY D 134 ASP D 144 1 11 HELIX 47 AF2 ALA D 183 LEU D 190 5 8 HELIX 48 AF3 THR D 205 THR D 217 1 13 HELIX 49 AF4 LEU D 230 GLY D 240 1 11 HELIX 50 AF5 ILE D 252 GLN D 258 1 7 HELIX 51 AF6 GLN D 268 GLN D 272 5 5 HELIX 52 AF7 ARG D 287 ILE D 297 1 11 SHEET 1 AA1 2 PHE A 52 ASP A 53 0 SHEET 2 AA1 2 THR A 60 LEU A 61 -1 O THR A 60 N ASP A 53 SHEET 1 AA211 VAL A 262 ILE A 263 0 SHEET 2 AA211 LEU A 168 VAL A 182 -1 N VAL A 182 O VAL A 262 SHEET 3 AA211 VAL A 244 PRO A 248 -1 O ALA A 245 N VAL A 181 SHEET 4 AA211 PRO A 197 TYR A 201 1 N LEU A 199 O VAL A 244 SHEET 5 AA211 LYS A 223 THR A 228 1 O LYS A 223 N TYR A 198 SHEET 6 AA211 ASN B 125 THR B 129 1 O VAL B 128 N GLU A 227 SHEET 7 AA211 THR B 96 VAL B 100 1 N ILE B 99 O SER B 127 SHEET 8 AA211 LEU B 149 TYR B 153 1 O PHE B 151 N VAL B 100 SHEET 9 AA211 ILE B 273 SER B 282 -1 O LEU B 278 N THR B 152 SHEET 10 AA211 LEU B 168 VAL B 182 -1 N VAL B 178 O ILE B 273 SHEET 11 AA211 VAL B 262 ILE B 263 -1 O VAL B 262 N VAL B 182 SHEET 1 AA311 VAL A 262 ILE A 263 0 SHEET 2 AA311 LEU A 168 VAL A 182 -1 N VAL A 182 O VAL A 262 SHEET 3 AA311 ILE A 273 SER A 282 -1 O ILE A 277 N ILE A 173 SHEET 4 AA311 LEU A 149 ASN A 154 -1 N THR A 152 O LEU A 278 SHEET 5 AA311 THR A 96 CYS A 101 1 N VAL A 100 O PHE A 151 SHEET 6 AA311 ASN A 125 PRO A 130 1 O SER A 127 N ILE A 99 SHEET 7 AA311 LEU B 222 THR B 228 1 O GLU B 227 N LEU A 126 SHEET 8 AA311 ILE B 196 TYR B 201 1 N ILE B 196 O LYS B 223 SHEET 9 AA311 VAL B 244 PRO B 248 1 O VAL B 244 N LEU B 199 SHEET 10 AA311 LEU B 168 VAL B 182 -1 N VAL B 181 O ALA B 245 SHEET 11 AA311 VAL B 262 ILE B 263 -1 O VAL B 262 N VAL B 182 SHEET 1 AA4 2 PHE B 52 ASP B 53 0 SHEET 2 AA4 2 THR B 60 LEU B 61 -1 O THR B 60 N ASP B 53 SHEET 1 AA5 2 PHE C 52 ASP C 53 0 SHEET 2 AA5 2 THR C 60 LEU C 61 -1 O THR C 60 N ASP C 53 SHEET 1 AA611 VAL C 262 ILE C 263 0 SHEET 2 AA611 LEU C 168 VAL C 182 -1 N VAL C 182 O VAL C 262 SHEET 3 AA611 VAL C 244 PRO C 248 -1 O ALA C 245 N VAL C 181 SHEET 4 AA611 ILE C 196 TYR C 201 1 N LEU C 199 O VAL C 244 SHEET 5 AA611 LEU C 222 THR C 228 1 O LYS C 223 N ILE C 196 SHEET 6 AA611 ASN D 125 PRO D 130 1 O VAL D 128 N GLU C 227 SHEET 7 AA611 THR D 96 CYS D 101 1 N ILE D 99 O SER D 127 SHEET 8 AA611 LEU D 149 TYR D 153 1 O LEU D 149 N VAL D 100 SHEET 9 AA611 ILE D 273 SER D 282 -1 O LEU D 278 N THR D 152 SHEET 10 AA611 LEU D 168 VAL D 182 -1 N ILE D 173 O ILE D 277 SHEET 11 AA611 VAL D 262 ILE D 263 -1 O VAL D 262 N VAL D 182 SHEET 1 AA711 VAL C 262 ILE C 263 0 SHEET 2 AA711 LEU C 168 VAL C 182 -1 N VAL C 182 O VAL C 262 SHEET 3 AA711 ILE C 273 SER C 282 -1 O ILE C 277 N ILE C 173 SHEET 4 AA711 LEU C 149 TYR C 153 -1 N THR C 152 O LEU C 278 SHEET 5 AA711 THR C 96 CYS C 101 1 N VAL C 100 O PHE C 151 SHEET 6 AA711 ASN C 125 PRO C 130 1 O SER C 127 N ILE C 99 SHEET 7 AA711 THR D 221 THR D 228 1 O GLU D 227 N VAL C 128 SHEET 8 AA711 THR D 195 TYR D 201 1 N SER D 200 O PHE D 226 SHEET 9 AA711 VAL D 244 PRO D 248 1 O VAL D 244 N LEU D 199 SHEET 10 AA711 LEU D 168 VAL D 182 -1 N VAL D 181 O ALA D 245 SHEET 11 AA711 VAL D 262 ILE D 263 -1 O VAL D 262 N VAL D 182 SHEET 1 AA8 2 PHE D 52 ASP D 53 0 SHEET 2 AA8 2 THR D 60 LEU D 61 -1 O THR D 60 N ASP D 53 CISPEP 1 TYR A 57 PRO A 58 0 -1.91 CISPEP 2 TYR B 57 PRO B 58 0 -3.03 CISPEP 3 TYR C 57 PRO C 58 0 -13.24 CISPEP 4 TYR D 57 PRO D 58 0 -5.94 SITE 1 AC1 2 HIS A 138 THR A 152 SITE 1 AC2 1 LEU A 207 SITE 1 AC3 2 LEU B 5 TRP B 46 SITE 1 AC4 2 THR C 104 SER C 231 SITE 1 AC5 4 SER C 131 VAL C 132 GLY C 134 PHE C 206 SITE 1 AC6 1 LEU C 5 SITE 1 AC7 3 THR D 205 LEU D 207 HOH D 514 SITE 1 AC8 1 LYS D 92 CRYST1 113.669 221.895 57.875 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008797 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004507 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017279 0.00000