HEADER TRANSPORT PROTEIN 28-AUG-17 5Y9V TITLE CRYSTAL STRUCTURE OF DIAMONDBACK MOTH RYANODINE RECEPTOR N-TERMINAL TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RYANODINE RECEPTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-205; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLUTELLA XYLOSTELLA; SOURCE 3 ORGANISM_COMMON: DIAMONDBACK MOTH; SOURCE 4 ORGANISM_TAXID: 51655; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIAMONDBACK MOTH, RYANODINE RECEPTOR, ION CHANNEL, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.LIN,Z.YUCHI REVDAT 3 22-NOV-23 5Y9V 1 REMARK REVDAT 2 09-SEP-20 5Y9V 1 TITLE REVDAT 1 20-DEC-17 5Y9V 0 JRNL AUTH L.LIN,C.LIU,J.QIN,J.WANG,S.DONG,W.CHEN,W.HE,Q.GAO,M.YOU, JRNL AUTH 2 Z.YUCHI JRNL TITL CRYSTAL STRUCTURE OF RYANODINE RECEPTOR N-TERMINAL DOMAIN JRNL TITL 2 FROM PLUTELLA XYLOSTELLA REVEALS TWO POTENTIAL JRNL TITL 3 SPECIES-SPECIFIC INSECTICIDE-TARGETING SITES. JRNL REF INSECT BIOCHEM. MOL. BIOL. V. 92 73 2017 JRNL REFN ISSN 1879-0240 JRNL PMID 29191465 JRNL DOI 10.1016/J.IBMB.2017.11.009 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.690 REMARK 3 FREE R VALUE TEST SET COUNT : 1985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8681 - 6.8380 1.00 1401 142 0.2167 0.2382 REMARK 3 2 6.8380 - 5.4315 1.00 1358 149 0.2354 0.2378 REMARK 3 3 5.4315 - 4.7461 1.00 1316 143 0.1781 0.2110 REMARK 3 4 4.7461 - 4.3127 1.00 1322 144 0.1517 0.1652 REMARK 3 5 4.3127 - 4.0039 1.00 1332 138 0.1786 0.2224 REMARK 3 6 4.0039 - 3.7680 1.00 1323 143 0.1863 0.2587 REMARK 3 7 3.7680 - 3.5794 1.00 1330 142 0.2273 0.2581 REMARK 3 8 3.5794 - 3.4237 1.00 1300 139 0.2565 0.3149 REMARK 3 9 3.4237 - 3.2919 1.00 1317 139 0.2480 0.2964 REMARK 3 10 3.2919 - 3.1784 1.00 1326 144 0.2510 0.2758 REMARK 3 11 3.1784 - 3.0790 1.00 1299 139 0.2501 0.2925 REMARK 3 12 3.0790 - 2.9910 1.00 1330 144 0.2842 0.3426 REMARK 3 13 2.9910 - 2.9123 1.00 1293 144 0.3339 0.4203 REMARK 3 14 2.9123 - 2.8413 0.96 1260 135 0.3904 0.4032 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 87.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2618 REMARK 3 ANGLE : 0.702 3577 REMARK 3 CHIRALITY : 0.044 428 REMARK 3 PLANARITY : 0.003 457 REMARK 3 DIHEDRAL : 15.685 1526 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 14 THROUGH 40 OR REMARK 3 (RESID 41 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 42 OR REMARK 3 (RESID 43 THROUGH 44 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 45 THROUGH 52 OR RESID 58 THROUGH REMARK 3 59 OR (RESID 60 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 61 OR (RESID 62 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 63 THROUGH 76 OR (RESID 77 THROUGH 81 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 95 OR RESID 97 REMARK 3 THROUGH 120 OR (RESID 121 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 122 THROUGH 135 OR RESID 137 OR REMARK 3 (RESID 138 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 139 REMARK 3 THROUGH 153 OR (RESID 154 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 155 THROUGH 201)) REMARK 3 SELECTION : (CHAIN B AND ((RESID 14 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 15 THROUGH 29 OR (RESID 30 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR (RESID 31 THROUGH 33 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 34 THROUGH 38 OR REMARK 3 (RESID 39 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR (RESID 40 REMARK 3 THROUGH 44 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 45 REMARK 3 THROUGH 72 OR (RESID 73 THROUGH 75 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 76 THROUGH 77 OR REMARK 3 (RESID 78 THROUGH 81 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 95 OR RESID 97 THROUGH 123 OR REMARK 3 (RESID 124 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 125 REMARK 3 THROUGH 134 OR (RESID 135 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 137 THROUGH 150 OR (RESID 151 REMARK 3 THROUGH 152 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 153 THROUGH 159 OR (RESID 160 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 161 THROUGH 181 OR (RESID 182 REMARK 3 THROUGH 183 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 184 THROUGH 196 OR (RESID 197 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 198 OR (RESID 199 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 200 THROUGH 201)) REMARK 3 ATOM PAIRS NUMBER : 1331 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Y9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1300004879. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20497 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.841 REMARK 200 RESOLUTION RANGE LOW (A) : 44.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3ILA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.0, 1.6 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.25433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.50867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.88150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.13583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 8.62717 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 SER A 9 REMARK 465 GLU A 10 REMARK 465 GLN A 11 REMARK 465 ASP A 12 REMARK 465 ASP A 13 REMARK 465 ALA A 82 REMARK 465 ALA A 83 REMARK 465 GLY A 84 REMARK 465 SER A 85 REMARK 465 GLU A 86 REMARK 465 THR A 87 REMARK 465 GLY A 88 REMARK 465 LYS A 89 REMARK 465 GLY A 90 REMARK 465 THR A 91 REMARK 465 GLY A 92 REMARK 465 SER A 93 REMARK 465 THR A 203 REMARK 465 GLY A 204 REMARK 465 ILE A 205 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 ALA B 4 REMARK 465 GLU B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 ALA B 8 REMARK 465 SER B 9 REMARK 465 GLU B 10 REMARK 465 GLN B 11 REMARK 465 ASP B 12 REMARK 465 ASP B 13 REMARK 465 ASP B 53 REMARK 465 LYS B 54 REMARK 465 ASN B 55 REMARK 465 ILE B 56 REMARK 465 PRO B 57 REMARK 465 ALA B 82 REMARK 465 ALA B 83 REMARK 465 GLY B 84 REMARK 465 SER B 85 REMARK 465 GLU B 86 REMARK 465 THR B 87 REMARK 465 GLY B 88 REMARK 465 LYS B 89 REMARK 465 GLY B 90 REMARK 465 THR B 91 REMARK 465 GLY B 92 REMARK 465 SER B 93 REMARK 465 GLY B 94 REMARK 465 GLY B 202 REMARK 465 THR B 203 REMARK 465 GLY B 204 REMARK 465 ILE B 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 14 CG1 CG2 REMARK 470 ARG A 18 CG CD NE CZ NH1 NH2 REMARK 470 THR A 30 OG1 CG2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 ARG A 44 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 51 CG1 CG2 CD1 REMARK 470 GLN A 52 CG CD OE1 NE2 REMARK 470 ASP A 53 CG OD1 OD2 REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 ASN A 55 CG OD1 ND2 REMARK 470 ILE A 56 CG1 CG2 CD1 REMARK 470 ASP A 59 CG OD1 OD2 REMARK 470 VAL A 73 CG1 CG2 REMARK 470 ARG A 74 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 LEU A 79 CG CD1 CD2 REMARK 470 VAL A 80 CG1 CG2 REMARK 470 THR A 81 OG1 CG2 REMARK 470 GLN A 124 CG CD OE1 NE2 REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 GLN A 152 CG CD OE1 NE2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 ARG A 160 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 ASN A 182 CG OD1 ND2 REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 SER A 197 OG REMARK 470 GLN A 199 CG CD OE1 NE2 REMARK 470 ARG B 18 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 PHE B 41 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 43 CG OD1 ND2 REMARK 470 ILE B 51 CG1 CG2 CD1 REMARK 470 GLN B 52 CG CD OE1 NE2 REMARK 470 ASP B 59 CG OD1 OD2 REMARK 470 LEU B 60 CG CD1 CD2 REMARK 470 GLN B 62 CG CD OE1 NE2 REMARK 470 GLN B 77 CG CD OE1 NE2 REMARK 470 SER B 121 OG REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 GLN B 138 CG CD OE1 NE2 REMARK 470 GLN B 152 CG CD OE1 NE2 REMARK 470 SER B 154 OG REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 LYS B 180 CG CD CE NZ REMARK 470 GLU B 183 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 127 NH2 ARG B 174 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 15 33.25 -90.80 REMARK 500 GLN A 52 94.80 -64.56 REMARK 500 ASN A 55 -168.27 -121.28 REMARK 500 ILE A 56 -179.55 -61.80 REMARK 500 ASP A 59 -151.30 -90.42 REMARK 500 ASP A 125 99.96 -61.42 REMARK 500 SER A 137 33.03 -97.61 REMARK 500 SER A 150 -158.50 -125.11 REMARK 500 ASN A 182 41.52 73.16 REMARK 500 SER B 15 35.02 -92.15 REMARK 500 THR B 30 -115.82 55.12 REMARK 500 LEU B 60 30.45 -87.98 REMARK 500 SER B 137 37.12 -87.72 REMARK 500 SER B 150 -157.32 -124.44 REMARK 500 ASN B 182 41.09 74.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 301 DBREF 5Y9V A 1 205 UNP G8EME3 G8EME3_PLUXY 1 205 DBREF 5Y9V B 1 205 UNP G8EME3 G8EME3_PLUXY 1 205 SEQADV 5Y9V SER A -2 UNP G8EME3 EXPRESSION TAG SEQADV 5Y9V ASN A -1 UNP G8EME3 EXPRESSION TAG SEQADV 5Y9V ALA A 0 UNP G8EME3 EXPRESSION TAG SEQADV 5Y9V SER B -2 UNP G8EME3 EXPRESSION TAG SEQADV 5Y9V ASN B -1 UNP G8EME3 EXPRESSION TAG SEQADV 5Y9V ALA B 0 UNP G8EME3 EXPRESSION TAG SEQRES 1 A 208 SER ASN ALA MET ALA GLU ALA GLU GLY GLY ALA SER GLU SEQRES 2 A 208 GLN ASP ASP VAL SER PHE LEU ARG THR GLU ASP MET VAL SEQRES 3 A 208 CYS LEU SER CYS THR ALA THR GLY GLU ARG VAL CYS LEU SEQRES 4 A 208 ALA ALA GLU GLY PHE GLY ASN ARG HIS CYS PHE LEU GLU SEQRES 5 A 208 ASN ILE GLN ASP LYS ASN ILE PRO PRO ASP LEU SER GLN SEQRES 6 A 208 CYS VAL PHE VAL ILE GLU GLN ALA LEU SER VAL ARG ALA SEQRES 7 A 208 LEU GLN GLU LEU VAL THR ALA ALA GLY SER GLU THR GLY SEQRES 8 A 208 LYS GLY THR GLY SER GLY HIS ARG THR LEU LEU TYR GLY SEQRES 9 A 208 ASN ALA ILE LEU LEU ARG HIS LEU ASN SER ASP MET TYR SEQRES 10 A 208 LEU ALA CYS LEU SER THR SER SER SER GLN ASP LYS LEU SEQRES 11 A 208 ALA PHE ASP VAL GLY LEU GLN GLU HIS SER GLN GLY GLU SEQRES 12 A 208 ALA CYS TRP TRP THR LEU HIS PRO ALA SER LYS GLN ARG SEQRES 13 A 208 SER GLU GLY GLU LYS VAL ARG VAL GLY ASP ASP LEU ILE SEQRES 14 A 208 LEU VAL SER VAL ALA THR GLU ARG TYR LEU HIS THR THR SEQRES 15 A 208 LYS GLU ASN GLU VAL SER ILE VAL ASN ALA SER PHE HIS SEQRES 16 A 208 VAL THR HIS TRP SER VAL GLN PRO TYR GLY THR GLY ILE SEQRES 1 B 208 SER ASN ALA MET ALA GLU ALA GLU GLY GLY ALA SER GLU SEQRES 2 B 208 GLN ASP ASP VAL SER PHE LEU ARG THR GLU ASP MET VAL SEQRES 3 B 208 CYS LEU SER CYS THR ALA THR GLY GLU ARG VAL CYS LEU SEQRES 4 B 208 ALA ALA GLU GLY PHE GLY ASN ARG HIS CYS PHE LEU GLU SEQRES 5 B 208 ASN ILE GLN ASP LYS ASN ILE PRO PRO ASP LEU SER GLN SEQRES 6 B 208 CYS VAL PHE VAL ILE GLU GLN ALA LEU SER VAL ARG ALA SEQRES 7 B 208 LEU GLN GLU LEU VAL THR ALA ALA GLY SER GLU THR GLY SEQRES 8 B 208 LYS GLY THR GLY SER GLY HIS ARG THR LEU LEU TYR GLY SEQRES 9 B 208 ASN ALA ILE LEU LEU ARG HIS LEU ASN SER ASP MET TYR SEQRES 10 B 208 LEU ALA CYS LEU SER THR SER SER SER GLN ASP LYS LEU SEQRES 11 B 208 ALA PHE ASP VAL GLY LEU GLN GLU HIS SER GLN GLY GLU SEQRES 12 B 208 ALA CYS TRP TRP THR LEU HIS PRO ALA SER LYS GLN ARG SEQRES 13 B 208 SER GLU GLY GLU LYS VAL ARG VAL GLY ASP ASP LEU ILE SEQRES 14 B 208 LEU VAL SER VAL ALA THR GLU ARG TYR LEU HIS THR THR SEQRES 15 B 208 LYS GLU ASN GLU VAL SER ILE VAL ASN ALA SER PHE HIS SEQRES 16 B 208 VAL THR HIS TRP SER VAL GLN PRO TYR GLY THR GLY ILE HET GOL A 301 14 HET CL B 301 1 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 CL CL 1- FORMUL 5 HOH *(H2 O) HELIX 1 AA1 LEU A 60 CYS A 63 5 4 HELIX 2 AA2 SER A 72 VAL A 80 1 9 HELIX 3 AA3 LEU B 60 GLN B 62 5 3 HELIX 4 AA4 SER B 72 VAL B 80 1 9 SHEET 1 AA1 9 CYS A 46 ASN A 50 0 SHEET 2 AA1 9 GLU A 32 ALA A 38 -1 N ALA A 37 O PHE A 47 SHEET 3 AA1 9 MET A 22 ALA A 29 -1 N LEU A 25 O LEU A 36 SHEET 4 AA1 9 TRP A 196 PRO A 200 -1 O SER A 197 N SER A 26 SHEET 5 AA1 9 ASP A 164 SER A 169 -1 N LEU A 165 O TRP A 196 SHEET 6 AA1 9 TRP A 143 PRO A 148 -1 N HIS A 147 O ILE A 166 SHEET 7 AA1 9 ALA A 103 HIS A 108 -1 N ILE A 104 O TRP A 144 SHEET 8 AA1 9 PHE A 65 LEU A 71 -1 N VAL A 66 O ARG A 107 SHEET 9 AA1 9 MET A 22 ALA A 29 -1 N VAL A 23 O PHE A 65 SHEET 1 AA2 4 TYR A 114 CYS A 117 0 SHEET 2 AA2 4 PHE A 129 GLN A 134 -1 O GLY A 132 N ALA A 116 SHEET 3 AA2 4 SER A 185 SER A 190 -1 O ALA A 189 N PHE A 129 SHEET 4 AA2 4 TYR A 175 LYS A 180 -1 N TYR A 175 O SER A 190 SHEET 1 AA3 9 PHE B 47 ASN B 50 0 SHEET 2 AA3 9 GLU B 32 ALA B 37 -1 N ALA B 37 O PHE B 47 SHEET 3 AA3 9 MET B 22 ALA B 29 -1 N LEU B 25 O LEU B 36 SHEET 4 AA3 9 TRP B 196 PRO B 200 -1 O SER B 197 N SER B 26 SHEET 5 AA3 9 ASP B 164 SER B 169 -1 N LEU B 165 O TRP B 196 SHEET 6 AA3 9 TRP B 143 PRO B 148 -1 N HIS B 147 O ILE B 166 SHEET 7 AA3 9 ALA B 103 HIS B 108 -1 N ILE B 104 O TRP B 144 SHEET 8 AA3 9 VAL B 64 LEU B 71 -1 N LEU B 71 O ALA B 103 SHEET 9 AA3 9 MET B 22 ALA B 29 -1 N VAL B 23 O PHE B 65 SHEET 1 AA4 4 TYR B 114 CYS B 117 0 SHEET 2 AA4 4 PHE B 129 GLN B 134 -1 O GLY B 132 N ALA B 116 SHEET 3 AA4 4 SER B 185 SER B 190 -1 O ALA B 189 N PHE B 129 SHEET 4 AA4 4 TYR B 175 LYS B 180 -1 N TYR B 175 O SER B 190 SSBOND 1 CYS A 35 CYS A 63 1555 1555 2.04 SSBOND 2 CYS B 35 CYS B 63 1555 1555 2.04 SITE 1 AC1 4 SER A 72 ALA A 75 ARG A 96 LYS B 151 SITE 1 AC2 2 ARG B 44 GLU B 135 CRYST1 170.130 170.130 51.763 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005878 0.003394 0.000000 0.00000 SCALE2 0.000000 0.006787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019319 0.00000