HEADER OXIDOREDUCTASE 01-SEP-17 5YAT TITLE CRYSTAL STRUCTURE OF MITOCHONDRIAL ALCOHOL DEHYDROGENASE ISOZYME III TITLE 2 FROM KOMAGATAELLA PHAFFII GS115 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL ALCOHOL DEHYDROGENASE ISOZYME III; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KOMAGATAELLA PHAFFII (STRAIN GS115 / ATCC SOURCE 3 20864); SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 644223; SOURCE 6 STRAIN: GS115 / ATCC 20864; SOURCE 7 ATCC: 20864; SOURCE 8 GENE: PAS_CHR2-1_0472; SOURCE 9 EXPRESSION_SYSTEM: PICHIA; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 4919 KEYWDS ALCOHOL DEHYDROGENASE, CATALYTIC ZINC, YEAST, DIMER, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.D.ZHANG,Q.LI REVDAT 2 22-NOV-23 5YAT 1 REMARK REVDAT 1 21-MAR-18 5YAT 0 JRNL AUTH H.ZHANG,Q.LI,L.WANG,Y.CHEN JRNL TITL INVESTIGATION OF STRUCTURE AND FUNCTION OF MITOCHONDRIAL JRNL TITL 2 ALCOHOL DEHYDROGENASE ISOZYME III FROM KOMAGATAELLA PHAFFII JRNL TITL 3 GS115. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1862 1199 2018 JRNL REFN ISSN 0006-3002 JRNL PMID 29474823 JRNL DOI 10.1016/J.BBAGEN.2018.02.012 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 70682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3558 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6215 - 5.0981 1.00 2928 168 0.1841 0.2085 REMARK 3 2 5.0981 - 4.0481 1.00 2905 162 0.1442 0.1771 REMARK 3 3 4.0481 - 3.5369 1.00 2912 149 0.1552 0.1695 REMARK 3 4 3.5369 - 3.2137 1.00 2891 156 0.1632 0.1901 REMARK 3 5 3.2137 - 2.9835 1.00 2879 156 0.1737 0.1888 REMARK 3 6 2.9835 - 2.8077 0.99 2845 168 0.1675 0.2071 REMARK 3 7 2.8077 - 2.6671 0.99 2870 151 0.1732 0.1957 REMARK 3 8 2.6671 - 2.5510 0.99 2836 157 0.1712 0.2021 REMARK 3 9 2.5510 - 2.4529 0.99 2848 141 0.1650 0.2099 REMARK 3 10 2.4529 - 2.3682 0.98 2844 147 0.1716 0.2030 REMARK 3 11 2.3682 - 2.2942 0.97 2778 153 0.1794 0.2122 REMARK 3 12 2.2942 - 2.2286 0.90 2572 137 0.2378 0.2964 REMARK 3 13 2.2286 - 2.1700 0.94 2725 143 0.1950 0.2171 REMARK 3 14 2.1700 - 2.1170 0.95 2776 144 0.1885 0.2314 REMARK 3 15 2.1170 - 2.0689 0.94 2690 146 0.1954 0.2426 REMARK 3 16 2.0689 - 2.0249 0.93 2676 132 0.2037 0.2197 REMARK 3 17 2.0249 - 1.9844 0.94 2777 133 0.2003 0.2448 REMARK 3 18 1.9844 - 1.9469 0.91 2624 118 0.2152 0.2548 REMARK 3 19 1.9469 - 1.9122 0.83 2372 133 0.3035 0.3452 REMARK 3 20 1.9122 - 1.8797 0.79 2279 130 0.2719 0.2762 REMARK 3 21 1.8797 - 1.8494 0.87 2502 135 0.2425 0.2431 REMARK 3 22 1.8494 - 1.8210 0.86 2475 133 0.2439 0.2947 REMARK 3 23 1.8210 - 1.7942 0.85 2413 133 0.2526 0.2807 REMARK 3 24 1.7942 - 1.7689 0.83 2402 131 0.2698 0.3284 REMARK 3 25 1.7689 - 1.7450 0.80 2305 102 0.2910 0.3361 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5299 REMARK 3 ANGLE : 0.747 7190 REMARK 3 CHIRALITY : 0.051 823 REMARK 3 PLANARITY : 0.005 918 REMARK 3 DIHEDRAL : 11.686 3102 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YAT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300004959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979158 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72896 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.745 REMARK 200 RESOLUTION RANGE LOW (A) : 96.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 21.90 REMARK 200 R MERGE (I) : 0.20500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4W6Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% (V/V) 2-PROPANOL, 0.2 M ZINC REMARK 280 ACETATE, 0.1M SODIUM CACODYLATE/HYDROCHLORIC ACID, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.17333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.34667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.17333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.34667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 650 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 749 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 PRO B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 83 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER B 179 O HOH B 501 1.44 REMARK 500 HG SER B 33 OD1 ASN B 81 1.55 REMARK 500 H ARG B 343 O HOH B 506 1.56 REMARK 500 HD22 ASN A 239 O HOH A 508 1.58 REMARK 500 O HOH A 744 O HOH A 798 1.88 REMARK 500 O HOH A 745 O HOH A 750 1.93 REMARK 500 O HOH A 693 O HOH A 762 1.96 REMARK 500 O HOH A 756 O HOH A 765 1.97 REMARK 500 O HOH A 623 O HOH A 736 1.98 REMARK 500 O HOH A 758 O HOH A 766 1.98 REMARK 500 O HOH B 670 O HOH B 701 2.01 REMARK 500 O HOH B 646 O HOH B 674 2.02 REMARK 500 O HOH B 621 O HOH B 706 2.02 REMARK 500 O HOH B 682 O HOH B 686 2.02 REMARK 500 OG SER B 33 OD1 ASN B 81 2.04 REMARK 500 O HOH B 572 O HOH B 693 2.09 REMARK 500 O HOH B 505 O HOH B 684 2.17 REMARK 500 O HOH B 544 O HOH B 651 2.17 REMARK 500 O HOH A 502 O HOH A 564 2.18 REMARK 500 O HOH B 535 O HOH B 649 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 679 O HOH B 692 4655 1.97 REMARK 500 O HOH A 711 O HOH B 670 4655 2.06 REMARK 500 O HOH A 571 O HOH A 767 3654 2.07 REMARK 500 O HOH A 660 O HOH B 507 6544 2.18 REMARK 500 O HOH A 799 O HOH B 713 4655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 58 28.73 -74.34 REMARK 500 HIS A 69 24.09 -144.66 REMARK 500 LEU A 101 -1.82 72.61 REMARK 500 ASN A 102 51.33 -140.33 REMARK 500 ALA A 110 55.29 -112.67 REMARK 500 PHE A 122 -64.34 -143.14 REMARK 500 PHE A 128 37.09 -87.40 REMARK 500 CYS A 156 -71.94 -125.48 REMARK 500 TYR A 297 -109.18 -98.73 REMARK 500 ILE A 340 72.23 -115.28 REMARK 500 PRO B 58 22.19 -74.39 REMARK 500 HIS B 69 23.64 -144.43 REMARK 500 LEU B 101 -1.57 74.20 REMARK 500 ALA B 110 55.97 -108.17 REMARK 500 PHE B 122 -63.22 -144.64 REMARK 500 PHE B 128 36.19 -85.70 REMARK 500 CYS B 156 -70.18 -125.86 REMARK 500 TYR B 297 -107.10 -97.79 REMARK 500 ALA B 337 37.04 -84.28 REMARK 500 ILE B 340 136.41 -37.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 HIS A 69 NE2 98.1 REMARK 620 3 GLU A 70 OE2 107.5 113.6 REMARK 620 4 CYS A 156 SG 125.4 107.6 104.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 100 SG REMARK 620 2 CYS A 103 SG 107.9 REMARK 620 3 CYS A 106 SG 120.8 103.2 REMARK 620 4 CYS A 114 SG 103.7 117.2 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 46 SG REMARK 620 2 HIS B 69 NE2 101.9 REMARK 620 3 GLU B 70 OE2 112.8 113.3 REMARK 620 4 CYS B 156 SG 124.5 104.6 99.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 100 SG REMARK 620 2 CYS B 103 SG 108.4 REMARK 620 3 CYS B 106 SG 118.4 104.7 REMARK 620 4 CYS B 114 SG 105.2 113.4 107.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 405 DBREF 5YAT A 1 350 UNP C4R0S8 C4R0S8_KOMPG 1 350 DBREF 5YAT B 1 350 UNP C4R0S8 C4R0S8_KOMPG 1 350 SEQRES 1 A 350 MET SER PRO THR ILE PRO THR THR GLN LYS ALA VAL ILE SEQRES 2 A 350 PHE GLU THR ASN GLY GLY PRO LEU GLU TYR LYS ASP ILE SEQRES 3 A 350 PRO VAL PRO LYS PRO LYS SER ASN GLU LEU LEU ILE ASN SEQRES 4 A 350 VAL LYS TYR SER GLY VAL CYS HIS THR ASP LEU HIS ALA SEQRES 5 A 350 TRP LYS GLY ASP TRP PRO LEU ASP ASN LYS LEU PRO LEU SEQRES 6 A 350 VAL GLY GLY HIS GLU GLY ALA GLY VAL VAL VAL ALA TYR SEQRES 7 A 350 GLY GLU ASN VAL THR GLY TRP GLU ILE GLY ASP TYR ALA SEQRES 8 A 350 GLY ILE LYS TRP LEU ASN GLY SER CYS LEU ASN CYS GLU SEQRES 9 A 350 TYR CYS ILE GLN GLY ALA GLU SER SER CYS ALA LYS ALA SEQRES 10 A 350 ASP LEU SER GLY PHE THR HIS ASP GLY SER PHE GLN GLN SEQRES 11 A 350 TYR ALA THR ALA ASP ALA THR GLN ALA ALA ARG ILE PRO SEQRES 12 A 350 LYS GLU ALA ASP LEU ALA GLU VAL ALA PRO ILE LEU CYS SEQRES 13 A 350 ALA GLY ILE THR VAL TYR LYS ALA LEU LYS THR ALA ASP SEQRES 14 A 350 LEU ARG ILE GLY GLN TRP VAL ALA ILE SER GLY ALA GLY SEQRES 15 A 350 GLY GLY LEU GLY SER LEU ALA VAL GLN TYR ALA LYS ALA SEQRES 16 A 350 LEU GLY LEU ARG VAL LEU GLY ILE ASP GLY GLY ALA ASP SEQRES 17 A 350 LYS GLY GLU PHE VAL LYS SER LEU GLY ALA GLU VAL PHE SEQRES 18 A 350 VAL ASP PHE THR LYS THR LYS ASP VAL VAL ALA GLU VAL SEQRES 19 A 350 GLN LYS LEU THR ASN GLY GLY PRO HIS GLY VAL ILE ASN SEQRES 20 A 350 VAL SER VAL SER PRO HIS ALA ILE ASN GLN SER VAL GLN SEQRES 21 A 350 TYR VAL ARG THR LEU GLY LYS VAL VAL LEU VAL GLY LEU SEQRES 22 A 350 PRO SER GLY ALA VAL VAL ASN SER ASP VAL PHE TRP HIS SEQRES 23 A 350 VAL LEU LYS SER ILE GLU ILE LYS GLY SER TYR VAL GLY SEQRES 24 A 350 ASN ARG GLU ASP SER ALA GLU ALA ILE ASP LEU PHE THR SEQRES 25 A 350 ARG GLY LEU VAL LYS ALA PRO ILE LYS ILE ILE GLY LEU SEQRES 26 A 350 SER GLU LEU ALA LYS VAL TYR GLU GLN MET GLU ALA GLY SEQRES 27 A 350 ALA ILE ILE GLY ARG TYR VAL VAL ASP THR SER LYS SEQRES 1 B 350 MET SER PRO THR ILE PRO THR THR GLN LYS ALA VAL ILE SEQRES 2 B 350 PHE GLU THR ASN GLY GLY PRO LEU GLU TYR LYS ASP ILE SEQRES 3 B 350 PRO VAL PRO LYS PRO LYS SER ASN GLU LEU LEU ILE ASN SEQRES 4 B 350 VAL LYS TYR SER GLY VAL CYS HIS THR ASP LEU HIS ALA SEQRES 5 B 350 TRP LYS GLY ASP TRP PRO LEU ASP ASN LYS LEU PRO LEU SEQRES 6 B 350 VAL GLY GLY HIS GLU GLY ALA GLY VAL VAL VAL ALA TYR SEQRES 7 B 350 GLY GLU ASN VAL THR GLY TRP GLU ILE GLY ASP TYR ALA SEQRES 8 B 350 GLY ILE LYS TRP LEU ASN GLY SER CYS LEU ASN CYS GLU SEQRES 9 B 350 TYR CYS ILE GLN GLY ALA GLU SER SER CYS ALA LYS ALA SEQRES 10 B 350 ASP LEU SER GLY PHE THR HIS ASP GLY SER PHE GLN GLN SEQRES 11 B 350 TYR ALA THR ALA ASP ALA THR GLN ALA ALA ARG ILE PRO SEQRES 12 B 350 LYS GLU ALA ASP LEU ALA GLU VAL ALA PRO ILE LEU CYS SEQRES 13 B 350 ALA GLY ILE THR VAL TYR LYS ALA LEU LYS THR ALA ASP SEQRES 14 B 350 LEU ARG ILE GLY GLN TRP VAL ALA ILE SER GLY ALA GLY SEQRES 15 B 350 GLY GLY LEU GLY SER LEU ALA VAL GLN TYR ALA LYS ALA SEQRES 16 B 350 LEU GLY LEU ARG VAL LEU GLY ILE ASP GLY GLY ALA ASP SEQRES 17 B 350 LYS GLY GLU PHE VAL LYS SER LEU GLY ALA GLU VAL PHE SEQRES 18 B 350 VAL ASP PHE THR LYS THR LYS ASP VAL VAL ALA GLU VAL SEQRES 19 B 350 GLN LYS LEU THR ASN GLY GLY PRO HIS GLY VAL ILE ASN SEQRES 20 B 350 VAL SER VAL SER PRO HIS ALA ILE ASN GLN SER VAL GLN SEQRES 21 B 350 TYR VAL ARG THR LEU GLY LYS VAL VAL LEU VAL GLY LEU SEQRES 22 B 350 PRO SER GLY ALA VAL VAL ASN SER ASP VAL PHE TRP HIS SEQRES 23 B 350 VAL LEU LYS SER ILE GLU ILE LYS GLY SER TYR VAL GLY SEQRES 24 B 350 ASN ARG GLU ASP SER ALA GLU ALA ILE ASP LEU PHE THR SEQRES 25 B 350 ARG GLY LEU VAL LYS ALA PRO ILE LYS ILE ILE GLY LEU SEQRES 26 B 350 SER GLU LEU ALA LYS VAL TYR GLU GLN MET GLU ALA GLY SEQRES 27 B 350 ALA ILE ILE GLY ARG TYR VAL VAL ASP THR SER LYS HET GOL A 401 14 HET GOL A 402 14 HET IPA A 403 12 HET ZN A 404 1 HET ZN A 405 1 HET GOL B 401 14 HET GOL B 402 14 HET IPA B 403 12 HET ZN B 404 1 HET ZN B 405 1 HETNAM GOL GLYCEROL HETNAM IPA ISOPROPYL ALCOHOL HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IPA 2-PROPANOL FORMUL 3 GOL 4(C3 H8 O3) FORMUL 5 IPA 2(C3 H8 O) FORMUL 6 ZN 4(ZN 2+) FORMUL 13 HOH *518(H2 O) HELIX 1 AA1 CYS A 46 GLY A 55 1 10 HELIX 2 AA2 CYS A 103 GLN A 108 1 6 HELIX 3 AA3 ALA A 110 CYS A 114 5 5 HELIX 4 AA4 ASP A 147 ALA A 152 1 6 HELIX 5 AA5 PRO A 153 LEU A 155 5 3 HELIX 6 AA6 CYS A 156 ASP A 169 1 14 HELIX 7 AA7 GLY A 183 LEU A 196 1 14 HELIX 8 AA8 GLY A 206 LEU A 216 1 11 HELIX 9 AA9 ASP A 229 THR A 238 1 10 HELIX 10 AB1 SER A 251 VAL A 262 1 12 HELIX 11 AB2 ASP A 282 LYS A 289 1 8 HELIX 12 AB3 ASN A 300 ARG A 313 1 14 HELIX 13 AB4 GLU A 327 ALA A 337 1 11 HELIX 14 AB5 CYS B 46 GLY B 55 1 10 HELIX 15 AB6 TYR B 105 GLY B 109 5 5 HELIX 16 AB7 ALA B 110 CYS B 114 5 5 HELIX 17 AB8 ASP B 147 ALA B 152 1 6 HELIX 18 AB9 PRO B 153 LEU B 155 5 3 HELIX 19 AC1 CYS B 156 ASP B 169 1 14 HELIX 20 AC2 GLY B 183 LEU B 196 1 14 HELIX 21 AC3 GLY B 206 LEU B 216 1 11 HELIX 22 AC4 ASP B 229 THR B 238 1 10 HELIX 23 AC5 SER B 251 VAL B 262 1 12 HELIX 24 AC6 ASP B 282 LYS B 289 1 8 HELIX 25 AC7 ASN B 300 ARG B 313 1 14 HELIX 26 AC8 GLU B 327 ALA B 337 1 11 SHEET 1 AA1 3 GLU A 22 PRO A 27 0 SHEET 2 AA1 3 THR A 8 PHE A 14 -1 N ILE A 13 O GLU A 22 SHEET 3 AA1 3 LEU A 65 VAL A 66 -1 O LEU A 65 N PHE A 14 SHEET 1 AA2 5 TYR A 131 ASP A 135 0 SHEET 2 AA2 5 GLU A 35 GLY A 44 -1 N LEU A 36 O ALA A 134 SHEET 3 AA2 5 GLY A 71 TYR A 78 -1 O VAL A 74 N ASN A 39 SHEET 4 AA2 5 TYR A 90 ILE A 93 -1 O ALA A 91 N GLY A 73 SHEET 5 AA2 5 ALA A 140 ILE A 142 -1 O ALA A 140 N GLY A 92 SHEET 1 AA3 4 TYR A 131 ASP A 135 0 SHEET 2 AA3 4 GLU A 35 GLY A 44 -1 N LEU A 36 O ALA A 134 SHEET 3 AA3 4 TYR A 344 ASP A 347 -1 O VAL A 346 N SER A 43 SHEET 4 AA3 4 LYS A 321 GLY A 324 1 N ILE A 323 O ASP A 347 SHEET 1 AA4 2 LEU A 96 GLY A 98 0 SHEET 2 AA4 2 ASP A 118 LEU A 119 -1 O ASP A 118 N GLY A 98 SHEET 1 AA5 6 VAL A 220 ASP A 223 0 SHEET 2 AA5 6 ARG A 199 ASP A 204 1 N GLY A 202 O VAL A 222 SHEET 3 AA5 6 TRP A 175 SER A 179 1 N VAL A 176 O ARG A 199 SHEET 4 AA5 6 GLY A 244 ASN A 247 1 O ILE A 246 N ALA A 177 SHEET 5 AA5 6 LYS A 267 VAL A 271 1 O VAL A 269 N VAL A 245 SHEET 6 AA5 6 GLU A 292 SER A 296 1 O GLU A 292 N VAL A 268 SHEET 1 AA6 3 GLU B 22 PRO B 27 0 SHEET 2 AA6 3 THR B 8 PHE B 14 -1 N ILE B 13 O GLU B 22 SHEET 3 AA6 3 LEU B 65 VAL B 66 -1 O LEU B 65 N PHE B 14 SHEET 1 AA7 5 TYR B 131 ASP B 135 0 SHEET 2 AA7 5 GLU B 35 GLY B 44 -1 N LEU B 36 O ALA B 134 SHEET 3 AA7 5 GLY B 71 TYR B 78 -1 O VAL B 74 N ASN B 39 SHEET 4 AA7 5 TYR B 90 ILE B 93 -1 O ALA B 91 N GLY B 73 SHEET 5 AA7 5 ALA B 140 ILE B 142 -1 O ALA B 140 N GLY B 92 SHEET 1 AA8 4 TYR B 131 ASP B 135 0 SHEET 2 AA8 4 GLU B 35 GLY B 44 -1 N LEU B 36 O ALA B 134 SHEET 3 AA8 4 TYR B 344 ASP B 347 -1 O VAL B 346 N SER B 43 SHEET 4 AA8 4 LYS B 321 GLY B 324 1 N ILE B 323 O ASP B 347 SHEET 1 AA9 2 LEU B 96 GLY B 98 0 SHEET 2 AA9 2 ASP B 118 LEU B 119 -1 O ASP B 118 N GLY B 98 SHEET 1 AB1 6 VAL B 220 ASP B 223 0 SHEET 2 AB1 6 ARG B 199 ASP B 204 1 N GLY B 202 O VAL B 222 SHEET 3 AB1 6 TRP B 175 SER B 179 1 N ILE B 178 O LEU B 201 SHEET 4 AB1 6 GLY B 244 ASN B 247 1 O ILE B 246 N ALA B 177 SHEET 5 AB1 6 LYS B 267 VAL B 271 1 O VAL B 269 N VAL B 245 SHEET 6 AB1 6 GLU B 292 SER B 296 1 O GLU B 292 N VAL B 268 LINK SG CYS A 46 ZN ZN A 404 1555 1555 2.29 LINK NE2 HIS A 69 ZN ZN A 404 1555 1555 2.10 LINK OE2 GLU A 70 ZN ZN A 404 1555 1555 1.89 LINK SG CYS A 100 ZN ZN A 405 1555 1555 2.35 LINK SG CYS A 103 ZN ZN A 405 1555 1555 2.30 LINK SG CYS A 106 ZN ZN A 405 1555 1555 2.36 LINK SG CYS A 114 ZN ZN A 405 1555 1555 2.33 LINK SG CYS A 156 ZN ZN A 404 1555 1555 2.32 LINK SG CYS B 46 ZN ZN B 404 1555 1555 2.32 LINK NE2 HIS B 69 ZN ZN B 404 1555 1555 2.04 LINK OE2 GLU B 70 ZN ZN B 404 1555 1555 1.87 LINK SG CYS B 100 ZN ZN B 405 1555 1555 2.28 LINK SG CYS B 103 ZN ZN B 405 1555 1555 2.38 LINK SG CYS B 106 ZN ZN B 405 1555 1555 2.34 LINK SG CYS B 114 ZN ZN B 405 1555 1555 2.29 LINK SG CYS B 156 ZN ZN B 404 1555 1555 2.30 CISPEP 1 LEU A 63 PRO A 64 0 -3.45 CISPEP 2 LEU B 63 PRO B 64 0 -4.10 SITE 1 AC1 5 GLN A 235 GLN A 260 HOH A 525 HOH A 574 SITE 2 AC1 5 HOH A 606 SITE 1 AC2 8 THR A 48 TRP A 57 TRP A 95 CYS A 156 SITE 2 AC2 8 HOH A 507 HOH A 510 HOH A 522 HOH A 678 SITE 1 AC3 3 GLY A 276 HOH A 512 ASP B 282 SITE 1 AC4 4 CYS A 46 HIS A 69 GLU A 70 CYS A 156 SITE 1 AC5 4 CYS A 100 CYS A 103 CYS A 106 CYS A 114 SITE 1 AC6 7 GLY A 206 GLN B 235 GLN B 260 HOH B 531 SITE 2 AC6 7 HOH B 545 HOH B 567 HOH B 613 SITE 1 AC7 6 THR B 48 HIS B 69 TRP B 95 CYS B 156 SITE 2 AC7 6 LEU B 273 HOH B 556 SITE 1 AC8 4 ASP A 282 PHE A 284 SER B 275 GLY B 276 SITE 1 AC9 4 CYS B 46 HIS B 69 GLU B 70 CYS B 156 SITE 1 AD1 4 CYS B 100 CYS B 103 CYS B 106 CYS B 114 CRYST1 111.856 111.856 105.520 90.00 90.00 120.00 P 64 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008940 0.005162 0.000000 0.00000 SCALE2 0.000000 0.010323 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009477 0.00000