HEADER OXIDOREDUCTASE 05-SEP-17 5YBP TITLE FE(II)/(ALPHA)KETOGLUTARATE-DEPENDENT DIOXYGENASE PRHA-V150L/A232S IN TITLE 2 COMPLEX WITH PREAUSTINOID A1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRHA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 6-294; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PENICILLIUM BRASILIANUM; SOURCE 3 ORGANISM_TAXID: 104259; SOURCE 4 GENE: PRHA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-KEGOGLUTARATE-DEPENDENT DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKASHIMA,M.SENDA REVDAT 2 22-NOV-23 5YBP 1 LINK REVDAT 1 24-JAN-18 5YBP 0 JRNL AUTH Y.NAKASHIMA,T.MORI,H.NAKAMURA,T.AWAKAWA,S.HOSHINO,M.SENDA, JRNL AUTH 2 T.SENDA,I.ABE JRNL TITL STRUCTURE FUNCTION AND ENGINEERING OF MULTIFUNCTIONAL JRNL TITL 2 NON-HEME IRON DEPENDENT OXYGENASES IN FUNGAL MEROTERPENOID JRNL TITL 3 BIOSYNTHESIS. JRNL REF NAT COMMUN V. 9 104 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29317628 JRNL DOI 10.1038/S41467-017-02371-W REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 33586 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7596 - 5.5650 0.91 2331 150 0.2094 0.2629 REMARK 3 2 5.5650 - 4.4218 0.92 2290 141 0.1798 0.2100 REMARK 3 3 4.4218 - 3.8642 0.92 2260 142 0.1681 0.2110 REMARK 3 4 3.8642 - 3.5115 0.89 2202 141 0.1851 0.2297 REMARK 3 5 3.5115 - 3.2602 0.91 2233 143 0.2071 0.2942 REMARK 3 6 3.2602 - 3.0681 0.92 2234 143 0.2208 0.3066 REMARK 3 7 3.0681 - 2.9146 0.93 2274 145 0.2414 0.2558 REMARK 3 8 2.9146 - 2.7879 0.93 2265 139 0.2666 0.3175 REMARK 3 9 2.7879 - 2.6806 0.93 2224 143 0.2656 0.2791 REMARK 3 10 2.6806 - 2.5882 0.93 2275 148 0.2843 0.3100 REMARK 3 11 2.5882 - 2.5073 0.92 2221 141 0.2759 0.3563 REMARK 3 12 2.5073 - 2.4356 0.94 2259 145 0.2887 0.2820 REMARK 3 13 2.4356 - 2.3715 0.90 2186 140 0.3194 0.3653 REMARK 3 14 2.3715 - 2.3137 0.93 2279 149 0.3358 0.4020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4394 REMARK 3 ANGLE : 0.945 5987 REMARK 3 CHIRALITY : 0.053 648 REMARK 3 PLANARITY : 0.006 803 REMARK 3 DIHEDRAL : 18.003 2585 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YBP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300003502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33586 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (1.10.1_2155) REMARK 200 STARTING MODEL: 5YBM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, LITHIUM CITRATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.60867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.30433 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.60867 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 15.30433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 SER A -5 REMARK 465 SER A -4 REMARK 465 GLY A -3 REMARK 465 ARG A 1 REMARK 465 GLY A 64 REMARK 465 ASP A 274 REMARK 465 SER A 296 REMARK 465 SER A 297 REMARK 465 ALA A 298 REMARK 465 MET B -15 REMARK 465 GLY B -14 REMARK 465 SER B -13 REMARK 465 SER B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 SER B -5 REMARK 465 SER B -4 REMARK 465 ILE B 37 REMARK 465 SER B 38 REMARK 465 PRO B 39 REMARK 465 THR B 82 REMARK 465 GLY B 123 REMARK 465 ILE B 199 REMARK 465 ALA B 220 REMARK 465 VAL B 270 REMARK 465 GLN B 271 REMARK 465 HIS B 272 REMARK 465 CYS B 273 REMARK 465 ASP B 274 REMARK 465 VAL B 275 REMARK 465 ASP B 276 REMARK 465 MET B 277 REMARK 465 VAL B 278 REMARK 465 HIS B 279 REMARK 465 SER B 296 REMARK 465 SER B 297 REMARK 465 ALA B 298 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A -2 CG CD1 CD2 REMARK 470 VAL A -1 CG1 CG2 REMARK 470 HIS A 4 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 5 CG SD CE REMARK 470 ARG A 8 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 VAL A 42 CG1 CG2 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 ASN A 65 CG OD1 ND2 REMARK 470 ASN A 67 CG OD1 ND2 REMARK 470 THR A 82 OG1 CG2 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 CYS A 149 SG REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 ARG A 185 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 THR A 195 OG1 CG2 REMARK 470 SER A 209 OG REMARK 470 THR A 223 OG1 CG2 REMARK 470 ARG A 225 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 236 CZ NH1 NH2 REMARK 470 MET A 241 CG SD CE REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 SER A 269 OG REMARK 470 VAL A 270 CG1 CG2 REMARK 470 GLN A 271 CG CD OE1 NE2 REMARK 470 HIS A 272 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 275 CG1 CG2 REMARK 470 MET A 277 CG SD CE REMARK 470 VAL A 278 CG1 CG2 REMARK 470 HIS A 279 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 ILE A 295 CG1 CG2 CD1 REMARK 470 LEU B -2 CG CD1 CD2 REMARK 470 VAL B -1 CG1 CG2 REMARK 470 ARG B 1 CG CD NE CZ NH1 NH2 REMARK 470 SER B 3 OG REMARK 470 MET B 5 CG SD CE REMARK 470 ARG B 8 CG CD NE CZ NH1 NH2 REMARK 470 THR B 15 OG1 CG2 REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 GLU B 40 CG CD OE1 OE2 REMARK 470 GLN B 41 CG CD OE1 NE2 REMARK 470 VAL B 42 CG1 CG2 REMARK 470 ARG B 44 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 45 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 47 CG CD OE1 NE2 REMARK 470 VAL B 49 CG1 CG2 REMARK 470 ASP B 50 CG OD1 OD2 REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 ASN B 62 CG OD1 ND2 REMARK 470 ASN B 63 CG OD1 ND2 REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 SER B 90 OG REMARK 470 ASP B 91 CG OD1 OD2 REMARK 470 LEU B 92 CG CD1 CD2 REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 ASP B 98 CG OD1 OD2 REMARK 470 ARG B 99 CZ NH1 NH2 REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 THR B 161 OG1 CG2 REMARK 470 GLU B 162 CG CD OE1 OE2 REMARK 470 GLU B 163 CG CD OE1 OE2 REMARK 470 ARG B 168 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 169 CG CD1 CD2 REMARK 470 PRO B 177 CG CD REMARK 470 GLU B 178 CG CD OE1 OE2 REMARK 470 GLU B 184 CG CD OE1 OE2 REMARK 470 ARG B 185 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 MET B 200 CG SD CE REMARK 470 GLN B 201 CG CD OE1 NE2 REMARK 470 ASP B 204 CG OD1 OD2 REMARK 470 CYS B 205 SG REMARK 470 ASN B 219 CG OD1 ND2 REMARK 470 THR B 222 OG1 CG2 REMARK 470 THR B 223 OG1 CG2 REMARK 470 ARG B 225 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 227 NH1 NH2 REMARK 470 LYS B 251 CG CD CE NZ REMARK 470 LYS B 286 CG CD CE NZ REMARK 470 ILE B 295 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 401 O HOH A 439 2.03 REMARK 500 O HOH B 435 O HOH B 450 2.11 REMARK 500 O HOH A 468 O HOH A 487 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 62 54.82 -91.40 REMARK 500 LYS A 75 49.79 -91.35 REMARK 500 GLU A 86 -50.41 -123.55 REMARK 500 ALA B 14 -6.58 -56.89 REMARK 500 VAL B 157 -66.86 -109.62 REMARK 500 ALA B 166 160.65 -46.80 REMARK 500 ASP B 284 72.99 45.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 130 NE2 REMARK 620 2 ASP A 132 OD1 95.1 REMARK 620 3 HIS A 214 NE2 88.1 94.5 REMARK 620 4 AKG A 302 O1 93.2 101.3 164.0 REMARK 620 5 AKG A 302 O5 101.0 163.2 81.6 82.5 REMARK 620 6 HOH A 403 O 173.8 89.4 87.4 90.0 74.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 130 NE2 REMARK 620 2 ASP B 132 OD1 95.7 REMARK 620 3 HIS B 214 NE2 84.3 87.3 REMARK 620 4 AKG B 302 O5 104.8 159.1 90.7 REMARK 620 5 AKG B 302 O2 96.6 108.5 163.9 73.5 REMARK 620 6 HOH B 412 O 159.0 73.4 77.4 85.8 103.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8SX B 303 DBREF1 5YBP A 6 294 UNP A0A1E1FFL0_9EURO DBREF2 5YBP A A0A1E1FFL0 6 294 DBREF1 5YBP B 6 294 UNP A0A1E1FFL0_9EURO DBREF2 5YBP B A0A1E1FFL0 6 294 SEQADV 5YBP MET A -15 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP GLY A -14 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP SER A -13 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP SER A -12 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP HIS A -11 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP HIS A -10 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP HIS A -9 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP HIS A -8 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP HIS A -7 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP HIS A -6 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP SER A -5 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP SER A -4 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP GLY A -3 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP LEU A -2 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP VAL A -1 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP PRO A 0 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP ARG A 1 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP GLY A 2 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP SER A 3 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP HIS A 4 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP MET A 5 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP LEU A 150 UNP A0A1E1FFL VAL 150 ENGINEERED MUTATION SEQADV 5YBP SER A 232 UNP A0A1E1FFL ALA 232 ENGINEERED MUTATION SEQADV 5YBP ILE A 295 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP SER A 296 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP SER A 297 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP ALA A 298 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP MET B -15 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP GLY B -14 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP SER B -13 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP SER B -12 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP HIS B -11 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP HIS B -10 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP HIS B -9 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP HIS B -8 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP HIS B -7 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP HIS B -6 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP SER B -5 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP SER B -4 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP GLY B -3 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP LEU B -2 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP VAL B -1 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP PRO B 0 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP ARG B 1 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP GLY B 2 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP SER B 3 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP HIS B 4 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP MET B 5 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP LEU B 150 UNP A0A1E1FFL VAL 150 ENGINEERED MUTATION SEQADV 5YBP SER B 232 UNP A0A1E1FFL ALA 232 ENGINEERED MUTATION SEQADV 5YBP ILE B 295 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP SER B 296 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP SER B 297 UNP A0A1E1FFL EXPRESSION TAG SEQADV 5YBP ALA B 298 UNP A0A1E1FFL EXPRESSION TAG SEQRES 1 A 314 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 314 LEU VAL PRO ARG GLY SER HIS MET PRO PRO ARG LEU GLN SEQRES 3 A 314 ARG PHE PRO ALA THR ALA SER ALA ASP GLU ILE PHE ALA SEQRES 4 A 314 ALA PHE GLN GLU ASP GLY CYS VAL VAL ILE GLU GLY PHE SEQRES 5 A 314 ILE SER PRO GLU GLN VAL ALA ARG PHE SER GLN GLU VAL SEQRES 6 A 314 ASP PRO ALA MET GLU LYS ILE PRO VAL GLU VAL THR ASN SEQRES 7 A 314 ASN GLY ASN SER ASN ASP ARG THR LYS ARG PHE SER LYS SEQRES 8 A 314 CYS VAL ILE ALA SER PRO THR PHE ARG ASN GLU ILE ILE SEQRES 9 A 314 GLU SER ASP LEU MET HIS GLU LEU CYS ASP ARG VAL PHE SEQRES 10 A 314 SER LYS PRO GLY GLU GLY MET GLY TYR HIS PHE ASN ASP SEQRES 11 A 314 ASN MET VAL ILE GLU VAL GLN PRO GLY ALA PRO ALA GLN SEQRES 12 A 314 ARG LEU HIS ARG ASP GLN GLU LEU TYR PRO TRP TRP ASN SEQRES 13 A 314 SER MET GLY PRO ALA GLY PRO GLU CYS LEU ILE ASN PHE SEQRES 14 A 314 PHE CYS ALA VAL THR PRO PHE THR GLU GLU ASN GLY ALA SEQRES 15 A 314 THR ARG LEU VAL PRO GLY SER HIS LEU TRP PRO GLU PHE SEQRES 16 A 314 THR GLN ILE ASN GLU ARG ASP CYS PRO GLN PHE GLY LYS SEQRES 17 A 314 ILE GLU THR VAL PRO ALA ILE MET GLN PRO GLY ASP CYS SEQRES 18 A 314 TYR LEU MET SER GLY LYS VAL ILE HIS GLY ALA GLY HIS SEQRES 19 A 314 ASN ALA THR THR THR ASP ARG ARG ARG ALA LEU ALA LEU SEQRES 20 A 314 SER ILE ILE ARG ARG GLU LEU ARG PRO MET GLN ALA PHE SEQRES 21 A 314 SER LEU SER VAL PRO MET LYS LEU ALA ARG GLU MET SER SEQRES 22 A 314 GLU ARG SER GLN THR MET PHE GLY PHE ARG SER SER VAL SEQRES 23 A 314 GLN HIS CYS ASP VAL ASP MET VAL HIS PHE TRP GLY ASN SEQRES 24 A 314 ASP GLY LYS ASP ILE ALA HIS HIS LEU GLY LEU ILE SER SEQRES 25 A 314 SER ALA SEQRES 1 B 314 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 314 LEU VAL PRO ARG GLY SER HIS MET PRO PRO ARG LEU GLN SEQRES 3 B 314 ARG PHE PRO ALA THR ALA SER ALA ASP GLU ILE PHE ALA SEQRES 4 B 314 ALA PHE GLN GLU ASP GLY CYS VAL VAL ILE GLU GLY PHE SEQRES 5 B 314 ILE SER PRO GLU GLN VAL ALA ARG PHE SER GLN GLU VAL SEQRES 6 B 314 ASP PRO ALA MET GLU LYS ILE PRO VAL GLU VAL THR ASN SEQRES 7 B 314 ASN GLY ASN SER ASN ASP ARG THR LYS ARG PHE SER LYS SEQRES 8 B 314 CYS VAL ILE ALA SER PRO THR PHE ARG ASN GLU ILE ILE SEQRES 9 B 314 GLU SER ASP LEU MET HIS GLU LEU CYS ASP ARG VAL PHE SEQRES 10 B 314 SER LYS PRO GLY GLU GLY MET GLY TYR HIS PHE ASN ASP SEQRES 11 B 314 ASN MET VAL ILE GLU VAL GLN PRO GLY ALA PRO ALA GLN SEQRES 12 B 314 ARG LEU HIS ARG ASP GLN GLU LEU TYR PRO TRP TRP ASN SEQRES 13 B 314 SER MET GLY PRO ALA GLY PRO GLU CYS LEU ILE ASN PHE SEQRES 14 B 314 PHE CYS ALA VAL THR PRO PHE THR GLU GLU ASN GLY ALA SEQRES 15 B 314 THR ARG LEU VAL PRO GLY SER HIS LEU TRP PRO GLU PHE SEQRES 16 B 314 THR GLN ILE ASN GLU ARG ASP CYS PRO GLN PHE GLY LYS SEQRES 17 B 314 ILE GLU THR VAL PRO ALA ILE MET GLN PRO GLY ASP CYS SEQRES 18 B 314 TYR LEU MET SER GLY LYS VAL ILE HIS GLY ALA GLY HIS SEQRES 19 B 314 ASN ALA THR THR THR ASP ARG ARG ARG ALA LEU ALA LEU SEQRES 20 B 314 SER ILE ILE ARG ARG GLU LEU ARG PRO MET GLN ALA PHE SEQRES 21 B 314 SER LEU SER VAL PRO MET LYS LEU ALA ARG GLU MET SER SEQRES 22 B 314 GLU ARG SER GLN THR MET PHE GLY PHE ARG SER SER VAL SEQRES 23 B 314 GLN HIS CYS ASP VAL ASP MET VAL HIS PHE TRP GLY ASN SEQRES 24 B 314 ASP GLY LYS ASP ILE ALA HIS HIS LEU GLY LEU ILE SER SEQRES 25 B 314 SER ALA HET FE A 301 1 HET AKG A 302 10 HET FE B 301 1 HET AKG B 302 10 HET 8SX B 303 33 HETNAM FE FE (III) ION HETNAM AKG 2-OXOGLUTARIC ACID HETNAM 8SX PREAUSTINOID A1 FORMUL 3 FE 2(FE 3+) FORMUL 4 AKG 2(C5 H6 O5) FORMUL 7 8SX C26 H36 O7 FORMUL 8 HOH *160(H2 O) HELIX 1 AA1 SER A 17 GLY A 29 1 13 HELIX 2 AA2 SER A 38 LYS A 55 1 18 HELIX 3 AA3 LYS A 75 SER A 80 1 6 HELIX 4 AA4 SER A 80 GLU A 86 1 7 HELIX 5 AA5 ILE A 87 GLU A 89 5 3 HELIX 6 AA6 SER A 90 SER A 102 1 13 HELIX 7 AA7 GLN A 133 TYR A 136 5 4 HELIX 8 AA8 TRP A 138 GLY A 146 5 9 HELIX 9 AA9 GLY A 172 TRP A 176 5 5 HELIX 10 AB1 ALA A 243 VAL A 248 1 6 HELIX 11 AB2 PRO A 249 GLU A 255 1 7 HELIX 12 AB3 SER A 257 PHE A 264 1 8 HELIX 13 AB4 ASP A 287 LEU A 292 1 6 HELIX 14 AB5 SER B 17 GLY B 29 1 13 HELIX 15 AB6 GLN B 41 LYS B 55 1 15 HELIX 16 AB7 LYS B 75 SER B 80 1 6 HELIX 17 AB8 PRO B 81 PRO B 81 5 1 HELIX 18 AB9 PHE B 83 ASN B 85 5 3 HELIX 19 AC1 GLU B 86 GLU B 89 5 4 HELIX 20 AC2 SER B 90 PHE B 101 1 12 HELIX 21 AC3 ARG B 131 TYR B 136 5 6 HELIX 22 AC4 TRP B 138 GLY B 146 5 9 HELIX 23 AC5 GLY B 172 TRP B 176 5 5 HELIX 24 AC6 ALA B 243 VAL B 248 1 6 HELIX 25 AC7 PRO B 249 MET B 256 1 8 HELIX 26 AC8 SER B 257 PHE B 264 1 8 HELIX 27 AC9 ASP B 287 GLY B 293 1 7 SHEET 1 AA1 7 ARG A 11 PRO A 13 0 SHEET 2 AA1 7 CYS A 30 GLU A 34 1 O GLU A 34 N PHE A 12 SHEET 3 AA1 7 CYS A 205 SER A 209 -1 O CYS A 205 N ILE A 33 SHEET 4 AA1 7 LEU A 150 ALA A 156 -1 N PHE A 154 O TYR A 206 SHEET 5 AA1 7 ARG A 226 ARG A 235 -1 O ILE A 233 N ILE A 151 SHEET 6 AA1 7 TYR A 110 VAL A 120 -1 N ASN A 113 O SER A 232 SHEET 7 AA1 7 THR A 70 PHE A 73 -1 N PHE A 73 O VAL A 117 SHEET 1 AA2 4 HIS A 130 ARG A 131 0 SHEET 2 AA2 4 ILE A 213 GLY A 215 -1 O HIS A 214 N HIS A 130 SHEET 3 AA2 4 ARG A 168 LEU A 169 -1 N ARG A 168 O GLY A 215 SHEET 4 AA2 4 VAL A 196 PRO A 197 -1 O VAL A 196 N LEU A 169 SHEET 1 AA3 2 SER A 269 HIS A 272 0 SHEET 2 AA3 2 MET A 277 PHE A 280 -1 O PHE A 280 N SER A 269 SHEET 1 AA4 7 ARG B 11 PRO B 13 0 SHEET 2 AA4 7 CYS B 30 GLU B 34 1 O VAL B 32 N PHE B 12 SHEET 3 AA4 7 CYS B 205 SER B 209 -1 O CYS B 205 N ILE B 33 SHEET 4 AA4 7 LEU B 150 ALA B 156 -1 N ASN B 152 O MET B 208 SHEET 5 AA4 7 ARG B 226 ARG B 235 -1 O LEU B 229 N CYS B 155 SHEET 6 AA4 7 TYR B 110 VAL B 120 -1 N MET B 116 O ALA B 230 SHEET 7 AA4 7 THR B 70 PHE B 73 -1 N LYS B 71 O GLU B 119 SHEET 1 AA5 3 VAL B 196 PRO B 197 0 SHEET 2 AA5 3 THR B 167 LEU B 169 -1 N LEU B 169 O VAL B 196 SHEET 3 AA5 3 HIS B 214 ALA B 216 -1 O GLY B 215 N ARG B 168 LINK NE2 HIS A 130 FE FE A 301 1555 1555 2.26 LINK OD1 ASP A 132 FE FE A 301 1555 1555 2.16 LINK NE2 HIS A 214 FE FE A 301 1555 1555 2.05 LINK FE FE A 301 O1 AKG A 302 1555 1555 2.04 LINK FE FE A 301 O5 AKG A 302 1555 1555 2.14 LINK FE FE A 301 O HOH A 403 1555 1555 2.28 LINK NE2 HIS B 130 FE FE B 301 1555 1555 2.20 LINK OD1 ASP B 132 FE FE B 301 1555 1555 2.44 LINK NE2 HIS B 214 FE FE B 301 1555 1555 2.23 LINK FE FE B 301 O5 AKG B 302 1555 1555 2.18 LINK FE FE B 301 O2 AKG B 302 1555 1555 2.43 LINK FE FE B 301 O HOH B 412 1555 1555 2.25 SITE 1 AC1 5 HIS A 130 ASP A 132 HIS A 214 AKG A 302 SITE 2 AC1 5 HOH A 403 SITE 1 AC2 11 GLN A 127 HIS A 130 ASP A 132 PHE A 154 SITE 2 AC2 11 THR A 167 HIS A 214 ALA A 216 ARG A 226 SITE 3 AC2 11 FE A 301 HOH A 403 HOH A 425 SITE 1 AC3 5 HIS B 130 ASP B 132 HIS B 214 AKG B 302 SITE 2 AC3 5 HOH B 412 SITE 1 AC4 12 ARG B 72 GLN B 127 HIS B 130 PHE B 154 SITE 2 AC4 12 THR B 167 HIS B 214 ALA B 216 ARG B 226 SITE 3 AC4 12 FE B 301 8SX B 303 HOH B 410 HOH B 412 SITE 1 AC5 16 ASP A 276 MET A 277 VAL A 278 SER B 66 SITE 2 AC5 16 ASN B 67 ARG B 72 MET B 116 GLN B 127 SITE 3 AC5 16 ARG B 128 HIS B 130 ASP B 132 LEU B 150 SITE 4 AC5 16 ASN B 152 SER B 232 MET B 241 AKG B 302 CRYST1 171.803 171.803 45.913 90.00 90.00 120.00 P 62 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005821 0.003361 0.000000 0.00000 SCALE2 0.000000 0.006721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021780 0.00000