HEADER TRANSFERASE 07-SEP-17 5YCF TITLE CRYSTAL STRUCTURE OF XIPHOPHORUS MACULATUS ADENYLATE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE ISOENZYME 1; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: AK 1,ATP-AMP TRANSPHOSPHORYLASE 1,ATP:AMP COMPND 5 PHOSPHOTRANSFERASE,ADENYLATE MONOPHOSPHATE KINASE,MYOKINASE; COMPND 6 EC: 2.7.4.3,2.7.4.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XIPHOPHORUS MACULATUS; SOURCE 3 ORGANISM_COMMON: SOUTHERN PLATYFISH; SOURCE 4 ORGANISM_TAXID: 8083; SOURCE 5 GENE: AK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.BAE,J.KIM,S.MOON REVDAT 3 22-NOV-23 5YCF 1 REMARK REVDAT 2 19-SEP-18 5YCF 1 JRNL REVDAT 1 12-SEP-18 5YCF 0 JRNL AUTH E.BAE,J.KIM,S.MOON JRNL TITL CRYSTAL STRUCTURE OF XIPHOPHORUS MACULATUS ADENYLATE KINASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 29539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8979 - 4.3079 0.99 2826 141 0.1571 0.1953 REMARK 3 2 4.3079 - 3.4199 1.00 2663 149 0.1482 0.2044 REMARK 3 3 3.4199 - 2.9877 1.00 2657 149 0.1794 0.2621 REMARK 3 4 2.9877 - 2.7146 0.99 2632 135 0.2001 0.2717 REMARK 3 5 2.7146 - 2.5201 0.99 2623 150 0.2049 0.2635 REMARK 3 6 2.5201 - 2.3715 0.99 2616 122 0.2023 0.2604 REMARK 3 7 2.3715 - 2.2528 0.99 2562 146 0.1987 0.2753 REMARK 3 8 2.2528 - 2.1547 0.99 2562 135 0.2031 0.2756 REMARK 3 9 2.1547 - 2.0718 0.97 2535 139 0.2170 0.2713 REMARK 3 10 2.0718 - 2.0003 0.92 2414 130 0.2218 0.2984 REMARK 3 11 2.0003 - 1.9377 0.76 1962 91 0.2387 0.3102 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3065 REMARK 3 ANGLE : 1.119 4134 REMARK 3 CHIRALITY : 0.041 464 REMARK 3 PLANARITY : 0.004 506 REMARK 3 DIHEDRAL : 13.739 1158 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.2765 -6.1488 126.6180 REMARK 3 T TENSOR REMARK 3 T11: 0.1035 T22: 0.1075 REMARK 3 T33: 0.0978 T12: 0.0099 REMARK 3 T13: 0.0029 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.1149 L22: 1.9882 REMARK 3 L33: 1.8968 L12: 1.1931 REMARK 3 L13: -0.6108 L23: -0.4228 REMARK 3 S TENSOR REMARK 3 S11: 0.0914 S12: 0.1639 S13: 0.2885 REMARK 3 S21: 0.0881 S22: 0.0061 S23: 0.2495 REMARK 3 S31: 0.1522 S32: -0.0125 S33: -0.1062 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1770 2.6392 128.3722 REMARK 3 T TENSOR REMARK 3 T11: 0.1100 T22: 0.1231 REMARK 3 T33: 0.3369 T12: -0.0036 REMARK 3 T13: 0.0279 T23: 0.0508 REMARK 3 L TENSOR REMARK 3 L11: 1.1130 L22: 2.2764 REMARK 3 L33: 1.3471 L12: -0.6131 REMARK 3 L13: 0.0875 L23: -0.3928 REMARK 3 S TENSOR REMARK 3 S11: 0.0966 S12: 0.1879 S13: 0.5017 REMARK 3 S21: -0.0144 S22: 0.0707 S23: 0.0988 REMARK 3 S31: -0.0318 S32: -0.1365 S33: -0.1033 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3966 -3.4441 137.4157 REMARK 3 T TENSOR REMARK 3 T11: 0.1584 T22: 0.1142 REMARK 3 T33: 0.1380 T12: -0.0191 REMARK 3 T13: 0.0340 T23: -0.0527 REMARK 3 L TENSOR REMARK 3 L11: 2.2320 L22: 3.7146 REMARK 3 L33: 2.2114 L12: 0.9258 REMARK 3 L13: -0.2045 L23: -0.4199 REMARK 3 S TENSOR REMARK 3 S11: 0.1243 S12: -0.3395 S13: 0.3648 REMARK 3 S21: 0.2305 S22: 0.0318 S23: 0.2295 REMARK 3 S31: 0.0249 S32: 0.0424 S33: -0.1467 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 122 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.4230 6.0997 131.8266 REMARK 3 T TENSOR REMARK 3 T11: 0.1150 T22: 0.1474 REMARK 3 T33: 0.2897 T12: -0.0123 REMARK 3 T13: 0.0159 T23: -0.0694 REMARK 3 L TENSOR REMARK 3 L11: 1.3887 L22: 1.1724 REMARK 3 L33: 2.3948 L12: 0.3508 REMARK 3 L13: -0.5218 L23: 0.3488 REMARK 3 S TENSOR REMARK 3 S11: 0.1682 S12: -0.1104 S13: 0.6008 REMARK 3 S21: -0.0009 S22: 0.0465 S23: 0.1112 REMARK 3 S31: -0.1841 S32: 0.2732 S33: -0.1238 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.7067 6.6344 100.1362 REMARK 3 T TENSOR REMARK 3 T11: 0.3031 T22: 0.1256 REMARK 3 T33: 0.3009 T12: 0.0264 REMARK 3 T13: 0.1109 T23: 0.0549 REMARK 3 L TENSOR REMARK 3 L11: 2.1683 L22: 2.5547 REMARK 3 L33: 1.7833 L12: -0.8455 REMARK 3 L13: 0.3098 L23: 1.3433 REMARK 3 S TENSOR REMARK 3 S11: 0.1953 S12: -0.0574 S13: 0.5591 REMARK 3 S21: -0.4112 S22: 0.0611 S23: 0.3098 REMARK 3 S31: -0.4400 S32: -0.0720 S33: -0.1881 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.8136 6.3462 110.2145 REMARK 3 T TENSOR REMARK 3 T11: 0.2328 T22: 0.2638 REMARK 3 T33: 0.2645 T12: -0.0630 REMARK 3 T13: 0.0910 T23: -0.1474 REMARK 3 L TENSOR REMARK 3 L11: 1.3595 L22: 1.9970 REMARK 3 L33: 1.9167 L12: -0.6518 REMARK 3 L13: 0.7523 L23: 1.2296 REMARK 3 S TENSOR REMARK 3 S11: 0.2828 S12: -0.7370 S13: 0.7523 REMARK 3 S21: 0.0056 S22: -0.1183 S23: 0.0180 REMARK 3 S31: -0.4174 S32: -0.0779 S33: 0.1701 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.3431 -1.7063 108.4852 REMARK 3 T TENSOR REMARK 3 T11: 0.1551 T22: 0.3077 REMARK 3 T33: 0.1278 T12: -0.0426 REMARK 3 T13: 0.0359 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 1.9846 L22: 1.0952 REMARK 3 L33: 2.0966 L12: -1.1043 REMARK 3 L13: 0.5320 L23: 0.3654 REMARK 3 S TENSOR REMARK 3 S11: 0.4299 S12: -0.8520 S13: 0.2726 REMARK 3 S21: 0.2180 S22: -0.2251 S23: 0.1074 REMARK 3 S31: -0.2745 S32: -0.2604 S33: -0.0802 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1279 -11.6746 104.5744 REMARK 3 T TENSOR REMARK 3 T11: 0.1869 T22: 0.2176 REMARK 3 T33: 0.2642 T12: -0.0542 REMARK 3 T13: -0.0714 T23: 0.0913 REMARK 3 L TENSOR REMARK 3 L11: 4.6310 L22: 7.0840 REMARK 3 L33: 9.1584 L12: -4.0472 REMARK 3 L13: -6.2422 L23: 5.0692 REMARK 3 S TENSOR REMARK 3 S11: 0.0493 S12: 0.1360 S13: -0.4618 REMARK 3 S21: 0.3785 S22: 0.0801 S23: -0.0218 REMARK 3 S31: 0.4201 S32: -0.5716 S33: -0.1114 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.4100 1.1015 99.8369 REMARK 3 T TENSOR REMARK 3 T11: 0.1633 T22: 0.2516 REMARK 3 T33: 0.2642 T12: 0.0481 REMARK 3 T13: 0.0821 T23: 0.0605 REMARK 3 L TENSOR REMARK 3 L11: 3.6562 L22: 8.4969 REMARK 3 L33: 2.8673 L12: -2.9533 REMARK 3 L13: 0.2521 L23: 1.2526 REMARK 3 S TENSOR REMARK 3 S11: 0.0585 S12: -0.1511 S13: 0.2526 REMARK 3 S21: -0.2811 S22: 0.3849 S23: 0.8449 REMARK 3 S31: -0.3201 S32: -0.2790 S33: -0.0593 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.0886 7.3978 103.1519 REMARK 3 T TENSOR REMARK 3 T11: 0.3122 T22: 0.2083 REMARK 3 T33: 0.2389 T12: -0.0259 REMARK 3 T13: 0.1608 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 3.3717 L22: 7.2810 REMARK 3 L33: 2.1707 L12: -0.9141 REMARK 3 L13: 0.8585 L23: 3.4713 REMARK 3 S TENSOR REMARK 3 S11: 0.1243 S12: -0.4084 S13: 0.6304 REMARK 3 S21: 0.1772 S22: 0.2105 S23: 0.1804 REMARK 3 S31: -0.2998 S32: 0.1131 S33: -0.1016 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.5695 4.3627 94.1578 REMARK 3 T TENSOR REMARK 3 T11: 0.2399 T22: 0.1735 REMARK 3 T33: 0.1162 T12: 0.0412 REMARK 3 T13: 0.0774 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 1.5760 L22: 3.4341 REMARK 3 L33: 2.4355 L12: 0.4816 REMARK 3 L13: -0.8835 L23: 0.2801 REMARK 3 S TENSOR REMARK 3 S11: 0.1962 S12: 0.3160 S13: 0.5061 REMARK 3 S21: -0.3672 S22: -0.1175 S23: 0.2814 REMARK 3 S31: -0.2572 S32: -0.1211 S33: -0.1118 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.9960 -14.2123 108.8812 REMARK 3 T TENSOR REMARK 3 T11: 0.1215 T22: 0.1669 REMARK 3 T33: 0.0993 T12: -0.0155 REMARK 3 T13: -0.0221 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 1.1842 L22: 4.5216 REMARK 3 L33: 6.3022 L12: 1.1417 REMARK 3 L13: -0.4623 L23: -1.9956 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: 0.2403 S13: -0.2143 REMARK 3 S21: -0.1510 S22: 0.0440 S23: 0.1072 REMARK 3 S31: 0.4083 S32: -0.5046 S33: -0.0105 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6261 -14.6317 97.0910 REMARK 3 T TENSOR REMARK 3 T11: 0.3360 T22: 0.2203 REMARK 3 T33: 0.1739 T12: 0.0635 REMARK 3 T13: -0.0010 T23: -0.0792 REMARK 3 L TENSOR REMARK 3 L11: 8.4533 L22: 3.8030 REMARK 3 L33: 2.9357 L12: 1.6232 REMARK 3 L13: -1.7709 L23: -2.0840 REMARK 3 S TENSOR REMARK 3 S11: -0.1348 S12: 0.4170 S13: -1.0377 REMARK 3 S21: -0.6301 S22: -0.1111 S23: -0.0683 REMARK 3 S31: 1.0281 S32: 0.0947 S33: 0.0439 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.8103 1.5828 94.3477 REMARK 3 T TENSOR REMARK 3 T11: 0.1860 T22: 0.2223 REMARK 3 T33: 0.1289 T12: -0.0043 REMARK 3 T13: 0.0569 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 1.5767 L22: 0.9229 REMARK 3 L33: 3.3062 L12: -0.3201 REMARK 3 L13: 1.5290 L23: -0.7855 REMARK 3 S TENSOR REMARK 3 S11: 0.1872 S12: 0.1425 S13: 0.1737 REMARK 3 S21: -0.1742 S22: -0.1074 S23: -0.0892 REMARK 3 S31: -0.1781 S32: 0.4293 S33: -0.0541 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.0583 7.6691 105.8732 REMARK 3 T TENSOR REMARK 3 T11: 0.1965 T22: 0.3511 REMARK 3 T33: 0.3186 T12: -0.1605 REMARK 3 T13: 0.0785 T23: -0.1723 REMARK 3 L TENSOR REMARK 3 L11: 5.2244 L22: 5.4978 REMARK 3 L33: 4.8638 L12: -1.5810 REMARK 3 L13: 2.2521 L23: -2.6474 REMARK 3 S TENSOR REMARK 3 S11: 0.0568 S12: -0.3162 S13: 0.9232 REMARK 3 S21: 0.2004 S22: -0.2544 S23: -0.3468 REMARK 3 S31: -0.4980 S32: 0.4565 S33: 0.0748 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YCF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300004906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30295 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5X6K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRIC ACID, PH 3.5, 27.5% REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.51650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.19300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.88950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.19300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.51650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.88950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 133 REMARK 465 GLU B 134 REMARK 465 THR B 135 REMARK 465 SER B 136 REMARK 465 GLY B 137 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 109 -63.89 -127.50 REMARK 500 PRO A 68 139.37 -36.66 REMARK 500 LYS A 88 42.72 -95.77 REMARK 500 ILE A 109 -67.02 -131.09 REMARK 500 ASP A 141 39.52 -86.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AP5 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AP5 A 201 DBREF 5YCF B 1 193 UNP M4AA20 M4AA20_XIPMA 1 193 DBREF 5YCF A 1 193 UNP M4AA20 M4AA20_XIPMA 1 193 SEQRES 1 B 193 MET ALA ASP LYS ILE LYS ASP ALA LYS ILE ILE PHE VAL SEQRES 2 B 193 VAL GLY GLY PRO GLY SER GLY LYS GLY THR GLN CYS GLU SEQRES 3 B 193 LYS ILE VAL ALA LYS TYR GLY TYR THR HIS LEU SER SER SEQRES 4 B 193 GLY ASP LEU LEU ARG ALA GLU VAL ALA SER GLY SER GLU SEQRES 5 B 193 ARG GLY LYS GLN LEU GLN ALA ILE MET GLN LYS GLY GLU SEQRES 6 B 193 LEU VAL PRO LEU ASP THR VAL LEU ASP MET ILE LYS ASP SEQRES 7 B 193 ALA MET ILE ALA LYS ALA ASP VAL SER LYS GLY PHE LEU SEQRES 8 B 193 ILE ASP GLY TYR PRO ARG GLU VAL LYS GLN GLY GLU GLU SEQRES 9 B 193 PHE GLU LYS LYS ILE GLY LYS PRO CYS LEU LEU LEU TYR SEQRES 10 B 193 VAL ASP ALA LYS ALA GLU THR MET VAL LYS ARG LEU LEU SEQRES 11 B 193 LYS ARG GLY GLU THR SER GLY ARG SER ASP ASP ASN GLU SEQRES 12 B 193 GLU THR ILE LYS LYS ARG LEU ASP LEU TYR TYR LYS ALA SEQRES 13 B 193 THR GLU PRO VAL ILE ALA PHE TYR GLU GLY ARG GLY ILE SEQRES 14 B 193 VAL LYS LYS VAL ASP SER GLU LEU ALA VAL ASP ASP VAL SEQRES 15 B 193 PHE ALA GLN VAL SER LYS ALA ILE ASP ALA LEU SEQRES 1 A 193 MET ALA ASP LYS ILE LYS ASP ALA LYS ILE ILE PHE VAL SEQRES 2 A 193 VAL GLY GLY PRO GLY SER GLY LYS GLY THR GLN CYS GLU SEQRES 3 A 193 LYS ILE VAL ALA LYS TYR GLY TYR THR HIS LEU SER SER SEQRES 4 A 193 GLY ASP LEU LEU ARG ALA GLU VAL ALA SER GLY SER GLU SEQRES 5 A 193 ARG GLY LYS GLN LEU GLN ALA ILE MET GLN LYS GLY GLU SEQRES 6 A 193 LEU VAL PRO LEU ASP THR VAL LEU ASP MET ILE LYS ASP SEQRES 7 A 193 ALA MET ILE ALA LYS ALA ASP VAL SER LYS GLY PHE LEU SEQRES 8 A 193 ILE ASP GLY TYR PRO ARG GLU VAL LYS GLN GLY GLU GLU SEQRES 9 A 193 PHE GLU LYS LYS ILE GLY LYS PRO CYS LEU LEU LEU TYR SEQRES 10 A 193 VAL ASP ALA LYS ALA GLU THR MET VAL LYS ARG LEU LEU SEQRES 11 A 193 LYS ARG GLY GLU THR SER GLY ARG SER ASP ASP ASN GLU SEQRES 12 A 193 GLU THR ILE LYS LYS ARG LEU ASP LEU TYR TYR LYS ALA SEQRES 13 A 193 THR GLU PRO VAL ILE ALA PHE TYR GLU GLY ARG GLY ILE SEQRES 14 A 193 VAL LYS LYS VAL ASP SER GLU LEU ALA VAL ASP ASP VAL SEQRES 15 A 193 PHE ALA GLN VAL SER LYS ALA ILE ASP ALA LEU HET AP5 B 201 57 HET AP5 A 201 57 HETNAM AP5 BIS(ADENOSINE)-5'-PENTAPHOSPHATE FORMUL 3 AP5 2(C20 H29 N10 O22 P5) FORMUL 5 HOH *329(H2 O) HELIX 1 AA1 MET B 1 ASP B 7 1 7 HELIX 2 AA2 GLY B 20 GLY B 33 1 14 HELIX 3 AA3 SER B 39 SER B 49 1 11 HELIX 4 AA4 SER B 51 LYS B 63 1 13 HELIX 5 AA5 PRO B 68 ALA B 84 1 17 HELIX 6 AA6 GLU B 98 ILE B 109 1 12 HELIX 7 AA7 LYS B 121 ARG B 132 1 12 HELIX 8 AA8 ASN B 142 THR B 157 1 16 HELIX 9 AA9 THR B 157 GLY B 168 1 12 HELIX 10 AB1 ALA B 178 ALA B 192 1 15 HELIX 11 AB2 GLY A 20 GLY A 33 1 14 HELIX 12 AB3 SER A 39 SER A 49 1 11 HELIX 13 AB4 SER A 51 LYS A 63 1 13 HELIX 14 AB5 PRO A 68 LYS A 83 1 16 HELIX 15 AB6 GLU A 98 ILE A 109 1 12 HELIX 16 AB7 LYS A 121 GLU A 134 1 14 HELIX 17 AB8 ASN A 142 THR A 157 1 16 HELIX 18 AB9 THR A 157 GLY A 168 1 12 HELIX 19 AC1 ALA A 178 ALA A 192 1 15 SHEET 1 AA1 5 THR B 35 SER B 38 0 SHEET 2 AA1 5 PHE B 90 ASP B 93 1 O LEU B 91 N LEU B 37 SHEET 3 AA1 5 ILE B 10 VAL B 14 1 N ILE B 11 O ILE B 92 SHEET 4 AA1 5 LEU B 114 ASP B 119 1 O VAL B 118 N VAL B 14 SHEET 5 AA1 5 VAL B 170 ASP B 174 1 O VAL B 173 N TYR B 117 SHEET 1 AA2 5 THR A 35 SER A 38 0 SHEET 2 AA2 5 PHE A 90 ASP A 93 1 O LEU A 91 N LEU A 37 SHEET 3 AA2 5 ILE A 10 GLY A 15 1 N ILE A 11 O ILE A 92 SHEET 4 AA2 5 LEU A 114 ASP A 119 1 O LEU A 116 N PHE A 12 SHEET 5 AA2 5 VAL A 170 ASP A 174 1 O LYS A 171 N LEU A 115 CISPEP 1 TYR B 95 PRO B 96 0 3.32 CISPEP 2 TYR A 95 PRO A 96 0 1.71 SITE 1 AC1 38 GLY B 16 PRO B 17 GLY B 18 SER B 19 SITE 2 AC1 38 GLY B 20 LYS B 21 GLY B 22 THR B 23 SITE 3 AC1 38 SER B 39 GLY B 40 LEU B 43 ARG B 44 SITE 4 AC1 38 MET B 61 GLU B 65 LEU B 66 VAL B 67 SITE 5 AC1 38 GLY B 94 TYR B 95 ARG B 97 GLN B 101 SITE 6 AC1 38 ARG B 128 ARG B 132 ARG B 138 ARG B 149 SITE 7 AC1 38 SER B 175 LEU B 177 VAL B 179 HOH B 315 SITE 8 AC1 38 HOH B 323 HOH B 331 HOH B 340 HOH B 350 SITE 9 AC1 38 HOH B 352 HOH B 366 HOH B 370 HOH B 387 SITE 10 AC1 38 HOH B 403 HOH B 406 SITE 1 AC2 40 GLY A 16 PRO A 17 GLY A 18 SER A 19 SITE 2 AC2 40 GLY A 20 LYS A 21 GLY A 22 THR A 23 SITE 3 AC2 40 SER A 39 GLY A 40 LEU A 43 ARG A 44 SITE 4 AC2 40 MET A 61 GLU A 65 LEU A 66 VAL A 67 SITE 5 AC2 40 GLY A 94 TYR A 95 ARG A 97 GLN A 101 SITE 6 AC2 40 ARG A 128 LEU A 129 ARG A 132 ARG A 138 SITE 7 AC2 40 ARG A 149 SER A 175 LEU A 177 VAL A 179 SITE 8 AC2 40 HOH A 303 HOH A 304 HOH A 323 HOH A 327 SITE 9 AC2 40 HOH A 339 HOH A 341 HOH A 342 HOH A 360 SITE 10 AC2 40 HOH A 363 HOH A 372 HOH A 373 HOH A 377 CRYST1 41.033 79.779 122.386 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024371 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008171 0.00000