HEADER DNA BINDING PROTEIN 17-SEP-17 5YEG TITLE CRYSTAL STRUCTURE OF CTCF ZFS4-8-HS5-1A COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REPRESSOR CTCF; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 349-490; COMPND 5 SYNONYM: 11-ZINC FINGER PROTEIN,CCCTC-BINDING FACTOR,CTCFL PARALOG; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TRANSCRIPTIONAL REPRESSOR CTCF; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 349-489; COMPND 11 SYNONYM: 11-ZINC FINGER PROTEIN,CCCTC-BINDING FACTOR,CTCFL PARALOG; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*TP*CP*GP*CP*CP*CP*TP*CP*TP*GP*CP*TP*GP*GP*TP*TP*AP*AP*AP*G)-3'); COMPND 16 CHAIN: D, E; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: DNA (5'- COMPND 20 D(*AP*CP*TP*TP*TP*AP*AP*CP*CP*AP*GP*CP*AP*GP*AP*GP*GP*GP*CP*G)-3'); COMPND 21 CHAIN: C, F; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTCF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CTCF; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 22 ORGANISM_TAXID: 32630 KEYWDS ZINC FINGERS, INSULATORS, ENHANCERS, PROMOTERS, 3D GENOME, KEYWDS 2 TOPOLOGICAL DOMAINS, CONTACT LOOPS, HIGHER-ORDER CHROMATIN KEYWDS 3 STRUCTURE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.YIN,J.WANG,M.WANG,X.LI REVDAT 3 27-MAR-24 5YEG 1 REMARK REVDAT 2 16-OCT-19 5YEG 1 COMPND REVDAT 1 29-NOV-17 5YEG 0 JRNL AUTH M.YIN,J.WANG,M.WANG,X.LI,M.ZHANG,Q.WU,Y.WANG JRNL TITL MOLECULAR MECHANISM OF DIRECTIONAL CTCF RECOGNITION OF A JRNL TITL 2 DIVERSE RANGE OF GENOMIC SITES JRNL REF CELL RES. V. 27 1365 2017 JRNL REFN ISSN 1748-7838 JRNL PMID 29076501 JRNL DOI 10.1038/CR.2017.131 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 42552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 2036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8457 - 4.9209 0.96 2685 146 0.1500 0.1496 REMARK 3 2 4.9209 - 3.9069 0.98 2739 142 0.1459 0.1671 REMARK 3 3 3.9069 - 3.4134 0.97 2725 121 0.1595 0.2022 REMARK 3 4 3.4134 - 3.1014 0.97 2716 135 0.1855 0.1889 REMARK 3 5 3.1014 - 2.8792 0.98 2727 139 0.2137 0.2315 REMARK 3 6 2.8792 - 2.7095 0.96 2690 122 0.2138 0.2819 REMARK 3 7 2.7095 - 2.5738 0.98 2713 139 0.2141 0.2281 REMARK 3 8 2.5738 - 2.4618 0.98 2726 144 0.2175 0.2594 REMARK 3 9 2.4618 - 2.3670 0.98 2758 123 0.2229 0.2361 REMARK 3 10 2.3670 - 2.2854 0.95 2683 129 0.2151 0.2343 REMARK 3 11 2.2854 - 2.2139 0.97 2669 152 0.2197 0.2424 REMARK 3 12 2.2139 - 2.1506 0.97 2700 156 0.2243 0.2700 REMARK 3 13 2.1506 - 2.0940 0.97 2660 124 0.2298 0.2325 REMARK 3 14 2.0940 - 2.0429 0.97 2732 149 0.2381 0.1967 REMARK 3 15 2.0429 - 1.9965 0.92 2593 115 0.2604 0.3030 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4165 REMARK 3 ANGLE : 1.004 5940 REMARK 3 CHIRALITY : 0.053 636 REMARK 3 PLANARITY : 0.006 478 REMARK 3 DIHEDRAL : 22.220 2207 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9717 -13.1736 -14.7166 REMARK 3 T TENSOR REMARK 3 T11: 0.3035 T22: 0.4588 REMARK 3 T33: 0.3466 T12: 0.0318 REMARK 3 T13: -0.0896 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 0.9438 L22: 1.4078 REMARK 3 L33: 1.4215 L12: 0.1493 REMARK 3 L13: 0.0463 L23: -0.5465 REMARK 3 S TENSOR REMARK 3 S11: -0.0572 S12: 0.5567 S13: 0.3894 REMARK 3 S21: -0.1906 S22: 0.0649 S23: 0.4809 REMARK 3 S31: -0.2592 S32: -0.4721 S33: 0.0176 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 378 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4787 -25.8919 -6.0225 REMARK 3 T TENSOR REMARK 3 T11: 0.2327 T22: 0.1423 REMARK 3 T33: 0.1808 T12: -0.0266 REMARK 3 T13: 0.0238 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.2387 L22: 0.5058 REMARK 3 L33: 0.8170 L12: 0.6697 REMARK 3 L13: 0.5005 L23: 0.2162 REMARK 3 S TENSOR REMARK 3 S11: -0.0305 S12: 0.0150 S13: -0.1582 REMARK 3 S21: -0.0320 S22: -0.0775 S23: -0.0323 REMARK 3 S31: 0.1426 S32: -0.0064 S33: 0.0849 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 406 THROUGH 431 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0425 -10.9259 -1.0099 REMARK 3 T TENSOR REMARK 3 T11: 0.1216 T22: 0.2016 REMARK 3 T33: 0.2254 T12: 0.0134 REMARK 3 T13: -0.0085 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.8225 L22: 1.5700 REMARK 3 L33: 0.7368 L12: 0.8305 REMARK 3 L13: 0.3906 L23: 0.7393 REMARK 3 S TENSOR REMARK 3 S11: -0.0290 S12: 0.0785 S13: -0.0108 REMARK 3 S21: -0.0413 S22: 0.1890 S23: -0.3563 REMARK 3 S31: 0.0830 S32: 0.2242 S33: -0.1290 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 436 THROUGH 461 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4306 -0.5119 12.5158 REMARK 3 T TENSOR REMARK 3 T11: 0.1484 T22: 0.1287 REMARK 3 T33: 0.1566 T12: -0.0040 REMARK 3 T13: 0.0112 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.5615 L22: 1.3370 REMARK 3 L33: 1.2876 L12: -0.3795 REMARK 3 L13: -0.3133 L23: 0.0344 REMARK 3 S TENSOR REMARK 3 S11: -0.0915 S12: -0.0129 S13: -0.0141 REMARK 3 S21: 0.0563 S22: 0.0338 S23: -0.0057 REMARK 3 S31: 0.1230 S32: -0.0077 S33: 0.0588 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 466 THROUGH 487 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6273 -2.0383 29.8379 REMARK 3 T TENSOR REMARK 3 T11: 0.3828 T22: 0.4203 REMARK 3 T33: 0.1967 T12: -0.1280 REMARK 3 T13: 0.0145 T23: 0.0679 REMARK 3 L TENSOR REMARK 3 L11: 1.1454 L22: 1.0693 REMARK 3 L33: 0.7043 L12: 1.0285 REMARK 3 L13: -0.4441 L23: 0.1397 REMARK 3 S TENSOR REMARK 3 S11: 0.3465 S12: -0.3272 S13: -0.0207 REMARK 3 S21: 0.4239 S22: -0.3460 S23: -0.2288 REMARK 3 S31: -0.5294 S32: 0.4962 S33: -0.0220 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 350 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9430 32.1376 15.9283 REMARK 3 T TENSOR REMARK 3 T11: 0.5023 T22: 0.2723 REMARK 3 T33: 0.4213 T12: 0.0171 REMARK 3 T13: -0.0153 T23: -0.0804 REMARK 3 L TENSOR REMARK 3 L11: 0.9967 L22: 1.2603 REMARK 3 L33: 1.3903 L12: -0.0691 REMARK 3 L13: -0.2957 L23: 0.2970 REMARK 3 S TENSOR REMARK 3 S11: 0.0231 S12: -0.1790 S13: 0.2508 REMARK 3 S21: 0.0337 S22: 0.1108 S23: -0.3396 REMARK 3 S31: -0.5599 S32: -0.2002 S33: -0.0939 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 378 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6536 15.6021 6.1875 REMARK 3 T TENSOR REMARK 3 T11: 0.1250 T22: 0.1443 REMARK 3 T33: 0.2124 T12: -0.0298 REMARK 3 T13: -0.0031 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 0.5620 L22: 0.9657 REMARK 3 L33: 0.9539 L12: 0.1618 REMARK 3 L13: -0.2575 L23: 0.2018 REMARK 3 S TENSOR REMARK 3 S11: 0.0630 S12: -0.1390 S13: 0.1903 REMARK 3 S21: -0.0088 S22: 0.0099 S23: -0.1732 REMARK 3 S31: -0.1712 S32: 0.2273 S33: -0.0826 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 406 THROUGH 431 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6208 3.7783 2.3029 REMARK 3 T TENSOR REMARK 3 T11: 0.1370 T22: 0.1894 REMARK 3 T33: 0.2722 T12: -0.0053 REMARK 3 T13: -0.0186 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 2.0307 L22: 0.6619 REMARK 3 L33: 0.4745 L12: 0.6266 REMARK 3 L13: 0.1181 L23: 0.1797 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: 0.0435 S13: -0.2632 REMARK 3 S21: 0.0505 S22: 0.0613 S23: -0.0130 REMARK 3 S31: 0.0685 S32: -0.1137 S33: -0.0824 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 436 THROUGH 461 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7835 21.5955 -11.6184 REMARK 3 T TENSOR REMARK 3 T11: 0.3084 T22: 0.4998 REMARK 3 T33: 0.3117 T12: 0.1337 REMARK 3 T13: 0.1022 T23: 0.1517 REMARK 3 L TENSOR REMARK 3 L11: 0.8216 L22: 0.7466 REMARK 3 L33: 0.8470 L12: -0.3692 REMARK 3 L13: 0.0993 L23: 0.0016 REMARK 3 S TENSOR REMARK 3 S11: -0.2476 S12: -0.3679 S13: -0.2656 REMARK 3 S21: -0.2908 S22: 0.3116 S23: 0.1534 REMARK 3 S31: -0.1608 S32: -0.5021 S33: -0.1419 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 466 THROUGH 489 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5590 29.5291 -29.5681 REMARK 3 T TENSOR REMARK 3 T11: 0.4643 T22: 0.3105 REMARK 3 T33: 0.2328 T12: -0.0325 REMARK 3 T13: 0.1272 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 0.9888 L22: 1.0800 REMARK 3 L33: 0.4803 L12: 0.3991 REMARK 3 L13: 0.1267 L23: -0.5561 REMARK 3 S TENSOR REMARK 3 S11: -0.2510 S12: 0.0901 S13: -0.1833 REMARK 3 S21: 0.1134 S22: 0.0823 S23: 0.2187 REMARK 3 S31: 0.6268 S32: -0.4633 S33: 0.1325 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9748 -19.2402 -21.4308 REMARK 3 T TENSOR REMARK 3 T11: 0.3876 T22: 0.6052 REMARK 3 T33: 0.2912 T12: 0.0237 REMARK 3 T13: 0.0005 T23: -0.0851 REMARK 3 L TENSOR REMARK 3 L11: 1.1797 L22: 2.6854 REMARK 3 L33: 3.1028 L12: 0.2770 REMARK 3 L13: 0.2424 L23: -0.1592 REMARK 3 S TENSOR REMARK 3 S11: -0.0943 S12: 0.8200 S13: -0.4304 REMARK 3 S21: -0.8104 S22: -0.3417 S23: 0.0771 REMARK 3 S31: -0.0472 S32: -0.7523 S33: 0.3340 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9078 -12.4506 3.2422 REMARK 3 T TENSOR REMARK 3 T11: 0.2279 T22: 0.1656 REMARK 3 T33: 0.2357 T12: -0.0451 REMARK 3 T13: 0.0143 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 1.3186 L22: 1.8032 REMARK 3 L33: 3.2158 L12: -0.3362 REMARK 3 L13: 0.4470 L23: 0.7816 REMARK 3 S TENSOR REMARK 3 S11: -0.1063 S12: 0.0067 S13: -0.0203 REMARK 3 S21: 0.0965 S22: -0.0002 S23: -0.0410 REMARK 3 S31: 0.0024 S32: -0.0114 S33: 0.1455 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2343 -5.7250 25.2886 REMARK 3 T TENSOR REMARK 3 T11: 0.9265 T22: 0.8181 REMARK 3 T33: 0.6600 T12: 0.1552 REMARK 3 T13: 0.0060 T23: -0.3495 REMARK 3 L TENSOR REMARK 3 L11: 0.1816 L22: 1.7467 REMARK 3 L33: 1.1712 L12: 0.3956 REMARK 3 L13: 0.4213 L23: 0.6824 REMARK 3 S TENSOR REMARK 3 S11: 0.5680 S12: -0.0629 S13: 0.1764 REMARK 3 S21: 0.3248 S22: 0.6204 S23: -1.0419 REMARK 3 S31: -0.7514 S32: 0.1840 S33: -0.4290 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0842 -10.7854 31.8638 REMARK 3 T TENSOR REMARK 3 T11: 1.0727 T22: 0.7356 REMARK 3 T33: 0.3518 T12: 0.0821 REMARK 3 T13: -0.1547 T23: -0.0566 REMARK 3 L TENSOR REMARK 3 L11: 1.8597 L22: 0.7848 REMARK 3 L33: 1.0196 L12: 1.1837 REMARK 3 L13: 1.3447 L23: 0.8100 REMARK 3 S TENSOR REMARK 3 S11: 0.4371 S12: -0.5873 S13: -0.2850 REMARK 3 S21: 0.5597 S22: 0.5276 S23: -0.9759 REMARK 3 S31: 0.4153 S32: 0.2696 S33: -0.2581 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5422 -12.1304 -2.5691 REMARK 3 T TENSOR REMARK 3 T11: 0.2057 T22: 0.2339 REMARK 3 T33: 0.1690 T12: -0.0184 REMARK 3 T13: 0.0120 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 1.1756 L22: 1.3103 REMARK 3 L33: 0.6001 L12: -0.2216 REMARK 3 L13: -0.1132 L23: 0.5180 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: 0.2012 S13: 0.0581 REMARK 3 S21: -0.1151 S22: 0.0833 S23: 0.0975 REMARK 3 S31: 0.0474 S32: -0.0447 S33: -0.0112 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1876 16.7171 5.8106 REMARK 3 T TENSOR REMARK 3 T11: 0.2577 T22: 0.2192 REMARK 3 T33: 0.2272 T12: 0.0211 REMARK 3 T13: -0.0467 T23: -0.0425 REMARK 3 L TENSOR REMARK 3 L11: 1.2198 L22: 1.7264 REMARK 3 L33: 2.2946 L12: -0.3418 REMARK 3 L13: 0.1795 L23: -0.2443 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: -0.1579 S13: 0.0719 REMARK 3 S21: 0.3068 S22: 0.1299 S23: -0.2365 REMARK 3 S31: -0.3219 S32: -0.0501 S33: -0.1752 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1194 8.8077 -23.8618 REMARK 3 T TENSOR REMARK 3 T11: 0.3918 T22: 0.6680 REMARK 3 T33: -0.9419 T12: 0.2376 REMARK 3 T13: -1.5496 T23: 0.4744 REMARK 3 L TENSOR REMARK 3 L11: 1.5884 L22: 0.1567 REMARK 3 L33: 0.8742 L12: 0.1985 REMARK 3 L13: 0.1374 L23: 0.3265 REMARK 3 S TENSOR REMARK 3 S11: 1.4417 S12: 0.4066 S13: -0.6629 REMARK 3 S21: -0.2300 S22: 0.7417 S23: 0.4328 REMARK 3 S31: -0.7636 S32: -1.0553 S33: -0.4996 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9403 11.0298 -21.0006 REMARK 3 T TENSOR REMARK 3 T11: 0.4798 T22: 0.4704 REMARK 3 T33: 0.2773 T12: 0.0549 REMARK 3 T13: -0.0838 T23: -0.0443 REMARK 3 L TENSOR REMARK 3 L11: 0.7359 L22: 0.3527 REMARK 3 L33: 1.5489 L12: -0.2840 REMARK 3 L13: 0.3121 L23: 0.1667 REMARK 3 S TENSOR REMARK 3 S11: 0.4523 S12: 0.4047 S13: -0.4053 REMARK 3 S21: -0.6514 S22: 0.2440 S23: 0.1550 REMARK 3 S31: 0.3473 S32: -0.1630 S33: -0.3976 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9634 18.3169 11.3767 REMARK 3 T TENSOR REMARK 3 T11: 0.2540 T22: 0.1876 REMARK 3 T33: 0.1741 T12: 0.0178 REMARK 3 T13: -0.0230 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.9726 L22: 1.3233 REMARK 3 L33: 1.7056 L12: -0.1256 REMARK 3 L13: 0.1111 L23: 0.1475 REMARK 3 S TENSOR REMARK 3 S11: 0.0928 S12: -0.2307 S13: 0.0480 REMARK 3 S21: 0.3102 S22: 0.0929 S23: -0.1356 REMARK 3 S31: -0.1722 S32: -0.2005 S33: -0.1770 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YEG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300005143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42594 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 39.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 5.6-6.0, 0.2M SODIUM REMARK 280 CHLORIDE, 17-24% PEG3350, EVAPORATION, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 349 REMARK 465 SER A 488 REMARK 465 HIS A 489 REMARK 465 LYS A 490 REMARK 465 DT D 21 REMARK 465 DT E 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 350 CG CD REMARK 470 LYS A 367 CG CD CE NZ REMARK 470 LYS A 487 CG CD CE NZ REMARK 470 LYS B 352 CG CD CE NZ REMARK 470 ASP B 443 CG OD1 OD2 REMARK 470 DT C 3 OP1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH F 147 O HOH F 148 1.80 REMARK 500 O HIS B 438 O HOH B 601 1.85 REMARK 500 O HOH D 141 O HOH C 149 1.87 REMARK 500 OP2 DG E 13 O HOH E 101 1.88 REMARK 500 O HOH B 743 O HOH B 760 1.88 REMARK 500 O HOH B 733 O HOH E 154 1.88 REMARK 500 O GLU B 464 O HOH B 602 1.90 REMARK 500 O HOH B 629 O HOH B 768 1.91 REMARK 500 OD2 ASP A 390 O HOH A 601 1.93 REMARK 500 O HOH B 610 O HOH B 617 1.94 REMARK 500 OP2 DG C 17 O HOH C 101 1.95 REMARK 500 OP2 DG E 10 O HOH E 102 1.96 REMARK 500 O HOH A 754 O HOH D 138 1.96 REMARK 500 OP2 DG E 20 O HOH E 103 1.96 REMARK 500 O HOH D 130 O HOH D 132 2.00 REMARK 500 O HOH B 769 O HOH F 102 2.04 REMARK 500 O HOH A 607 O HOH A 635 2.05 REMARK 500 OP2 DG D 13 O HOH D 101 2.06 REMARK 500 O HOH C 141 O HOH C 146 2.06 REMARK 500 O6 DG D 20 O HOH D 102 2.06 REMARK 500 OP2 DC E 6 O HOH E 104 2.09 REMARK 500 O HOH B 632 O HOH B 726 2.09 REMARK 500 OP2 DC D 6 O HOH D 103 2.10 REMARK 500 O4 DT D 16 O HOH D 104 2.13 REMARK 500 OP2 DG D 14 O HOH D 105 2.13 REMARK 500 O HOH B 780 O HOH B 799 2.14 REMARK 500 O HOH E 158 O HOH F 140 2.15 REMARK 500 OP2 DC E 4 O HOH E 105 2.15 REMARK 500 O HOH C 115 O HOH C 153 2.15 REMARK 500 O HOH D 107 O HOH D 149 2.15 REMARK 500 O HOH F 146 O HOH F 148 2.15 REMARK 500 NH1 ARG B 448 O HOH B 603 2.16 REMARK 500 OD1 ASP A 473 O HOH A 602 2.18 REMARK 500 OP1 DG E 20 O HOH E 106 2.18 REMARK 500 O HOH B 799 O HOH B 800 2.18 REMARK 500 OE1 GLU A 376 O HOH A 603 2.19 REMARK 500 O HOH B 650 O HOH E 105 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 795 O HOH D 153 1565 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA D 17 O3' DA D 17 C3' -0.041 REMARK 500 DT C 4 O3' DT C 4 C3' -0.072 REMARK 500 DT C 5 O3' DT C 5 C3' -0.062 REMARK 500 DG C 14 O3' DG C 14 C3' -0.054 REMARK 500 DG E 10 O3' DG E 10 C3' -0.040 REMARK 500 DC F 12 O3' DC F 12 C3' -0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 350 N - CA - CB ANGL. DEV. = 7.3 DEGREES REMARK 500 DC D 5 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA D 17 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA C 1 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DA C 13 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC E 6 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG E 10 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC F 12 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 783 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH B 798 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B 799 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B 800 DISTANCE = 6.34 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 353 SG REMARK 620 2 CYS A 356 SG 118.3 REMARK 620 3 HIS A 369 NE2 100.7 96.9 REMARK 620 4 HIS A 373 NE2 98.3 134.7 101.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 381 SG REMARK 620 2 CYS A 384 SG 121.8 REMARK 620 3 HIS A 397 NE2 115.0 93.9 REMARK 620 4 HIS A 401 NE2 107.4 113.9 103.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 409 SG REMARK 620 2 CYS A 412 SG 115.0 REMARK 620 3 HIS A 425 NE2 114.6 101.3 REMARK 620 4 HIS A 430 NE2 106.2 118.8 100.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 439 SG REMARK 620 2 CYS A 442 SG 121.1 REMARK 620 3 HIS A 455 NE2 105.7 100.9 REMARK 620 4 HIS A 460 NE2 103.2 119.9 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 469 SG REMARK 620 2 CYS A 472 SG 125.2 REMARK 620 3 HIS A 485 NE2 122.1 86.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 353 SG REMARK 620 2 CYS B 356 SG 121.9 REMARK 620 3 HIS B 369 NE2 105.9 90.3 REMARK 620 4 HIS B 373 NE2 107.9 117.5 111.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 381 SG REMARK 620 2 CYS B 384 SG 122.4 REMARK 620 3 HIS B 397 NE2 111.6 97.0 REMARK 620 4 HIS B 401 NE2 110.6 107.8 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 409 SG REMARK 620 2 CYS B 412 SG 115.8 REMARK 620 3 HIS B 425 NE2 114.4 105.2 REMARK 620 4 HIS B 430 NE2 108.1 110.2 102.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 439 SG REMARK 620 2 CYS B 442 SG 120.7 REMARK 620 3 HIS B 455 NE2 100.5 115.4 REMARK 620 4 HIS B 460 NE2 88.8 131.9 92.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 469 SG REMARK 620 2 CYS B 472 SG 124.2 REMARK 620 3 HIS B 485 NE2 105.7 96.3 REMARK 620 4 HIS B 489 NE2 103.0 121.3 103.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 505 DBREF 5YEG A 349 490 UNP P49711 CTCF_HUMAN 349 490 DBREF 5YEG B 349 489 UNP P49711 CTCF_HUMAN 349 489 DBREF 5YEG D 1 21 PDB 5YEG 5YEG 1 21 DBREF 5YEG C 1 20 PDB 5YEG 5YEG 1 20 DBREF 5YEG E 1 21 PDB 5YEG 5YEG 1 21 DBREF 5YEG F 1 20 PDB 5YEG 5YEG 1 20 SEQRES 1 A 142 LYS PRO PHE LYS CYS SER MET CYS ASP TYR ALA SER VAL SEQRES 2 A 142 GLU VAL SER LYS LEU LYS ARG HIS ILE ARG SER HIS THR SEQRES 3 A 142 GLY GLU ARG PRO PHE GLN CYS SER LEU CYS SER TYR ALA SEQRES 4 A 142 SER ARG ASP THR TYR LYS LEU LYS ARG HIS MET ARG THR SEQRES 5 A 142 HIS SER GLY GLU LYS PRO TYR GLU CYS TYR ILE CYS HIS SEQRES 6 A 142 ALA ARG PHE THR GLN SER GLY THR MET LYS MET HIS ILE SEQRES 7 A 142 LEU GLN LYS HIS THR GLU ASN VAL ALA LYS PHE HIS CYS SEQRES 8 A 142 PRO HIS CYS ASP THR VAL ILE ALA ARG LYS SER ASP LEU SEQRES 9 A 142 GLY VAL HIS LEU ARG LYS GLN HIS SER TYR ILE GLU GLN SEQRES 10 A 142 GLY LYS LYS CYS ARG TYR CYS ASP ALA VAL PHE HIS GLU SEQRES 11 A 142 ARG TYR ALA LEU ILE GLN HIS GLN LYS SER HIS LYS SEQRES 1 B 141 LYS PRO PHE LYS CYS SER MET CYS ASP TYR ALA SER VAL SEQRES 2 B 141 GLU VAL SER LYS LEU LYS ARG HIS ILE ARG SER HIS THR SEQRES 3 B 141 GLY GLU ARG PRO PHE GLN CYS SER LEU CYS SER TYR ALA SEQRES 4 B 141 SER ARG ASP THR TYR LYS LEU LYS ARG HIS MET ARG THR SEQRES 5 B 141 HIS SER GLY GLU LYS PRO TYR GLU CYS TYR ILE CYS HIS SEQRES 6 B 141 ALA ARG PHE THR GLN SER GLY THR MET LYS MET HIS ILE SEQRES 7 B 141 LEU GLN LYS HIS THR GLU ASN VAL ALA LYS PHE HIS CYS SEQRES 8 B 141 PRO HIS CYS ASP THR VAL ILE ALA ARG LYS SER ASP LEU SEQRES 9 B 141 GLY VAL HIS LEU ARG LYS GLN HIS SER TYR ILE GLU GLN SEQRES 10 B 141 GLY LYS LYS CYS ARG TYR CYS ASP ALA VAL PHE HIS GLU SEQRES 11 B 141 ARG TYR ALA LEU ILE GLN HIS GLN LYS SER HIS SEQRES 1 D 21 DT DC DG DC DC DC DT DC DT DG DC DT DG SEQRES 2 D 21 DG DT DT DA DA DA DG DT SEQRES 1 C 20 DA DC DT DT DT DA DA DC DC DA DG DC DA SEQRES 2 C 20 DG DA DG DG DG DC DG SEQRES 1 E 21 DT DC DG DC DC DC DT DC DT DG DC DT DG SEQRES 2 E 21 DG DT DT DA DA DA DG DT SEQRES 1 F 20 DA DC DT DT DT DA DA DC DC DA DG DC DA SEQRES 2 F 20 DG DA DG DG DG DC DG HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET ZN A 505 1 HET ZN B 501 1 HET ZN B 502 1 HET ZN B 503 1 HET ZN B 504 1 HET ZN B 505 1 HETNAM ZN ZINC ION FORMUL 7 ZN 10(ZN 2+) FORMUL 17 HOH *607(H2 O) HELIX 1 AA1 GLU A 362 GLY A 375 1 14 HELIX 2 AA2 ASP A 390 GLY A 403 1 14 HELIX 3 AA3 GLN A 418 HIS A 430 1 13 HELIX 4 AA4 ARG A 448 HIS A 460 1 13 HELIX 5 AA5 GLU A 478 LYS A 487 1 10 HELIX 6 AA6 GLU B 362 GLY B 375 1 14 HELIX 7 AA7 ASP B 390 GLY B 403 1 14 HELIX 8 AA8 GLN B 418 HIS B 430 1 13 HELIX 9 AA9 ARG B 448 HIS B 460 1 13 HELIX 10 AB1 GLU B 478 SER B 488 1 11 SHEET 1 AA1 2 PHE A 351 LYS A 352 0 SHEET 2 AA1 2 ALA A 359 SER A 360 -1 O SER A 360 N PHE A 351 SHEET 1 AA2 2 PHE A 379 GLN A 380 0 SHEET 2 AA2 2 ALA A 387 SER A 388 -1 O SER A 388 N PHE A 379 SHEET 1 AA3 2 TYR A 407 GLU A 408 0 SHEET 2 AA3 2 ARG A 415 PHE A 416 -1 O PHE A 416 N TYR A 407 SHEET 1 AA4 2 PHE A 437 HIS A 438 0 SHEET 2 AA4 2 VAL A 445 ILE A 446 -1 O ILE A 446 N PHE A 437 SHEET 1 AA5 2 LYS A 467 LYS A 468 0 SHEET 2 AA5 2 VAL A 475 PHE A 476 -1 O PHE A 476 N LYS A 467 SHEET 1 AA6 2 PHE B 351 LYS B 352 0 SHEET 2 AA6 2 ALA B 359 SER B 360 -1 O SER B 360 N PHE B 351 SHEET 1 AA7 2 PHE B 379 GLN B 380 0 SHEET 2 AA7 2 ALA B 387 SER B 388 -1 O SER B 388 N PHE B 379 SHEET 1 AA8 2 TYR B 407 GLU B 408 0 SHEET 2 AA8 2 ARG B 415 PHE B 416 -1 O PHE B 416 N TYR B 407 SHEET 1 AA9 2 PHE B 437 HIS B 438 0 SHEET 2 AA9 2 VAL B 445 ILE B 446 -1 O ILE B 446 N PHE B 437 SHEET 1 AB1 2 LYS B 467 LYS B 468 0 SHEET 2 AB1 2 VAL B 475 PHE B 476 -1 O PHE B 476 N LYS B 467 LINK SG CYS A 353 ZN ZN A 501 1555 1555 2.41 LINK SG CYS A 356 ZN ZN A 501 1555 1555 2.13 LINK NE2 HIS A 369 ZN ZN A 501 1555 1555 2.23 LINK NE2 HIS A 373 ZN ZN A 501 1555 1555 1.95 LINK SG CYS A 381 ZN ZN A 504 1555 1555 2.30 LINK SG CYS A 384 ZN ZN A 504 1555 1555 2.37 LINK NE2 HIS A 397 ZN ZN A 504 1555 1555 2.15 LINK NE2 HIS A 401 ZN ZN A 504 1555 1555 1.98 LINK SG CYS A 409 ZN ZN A 502 1555 1555 2.20 LINK SG CYS A 412 ZN ZN A 502 1555 1555 2.36 LINK NE2 HIS A 425 ZN ZN A 502 1555 1555 2.16 LINK NE2 HIS A 430 ZN ZN A 502 1555 1555 2.18 LINK SG CYS A 439 ZN ZN A 503 1555 1555 2.32 LINK SG CYS A 442 ZN ZN A 503 1555 1555 2.32 LINK NE2 HIS A 455 ZN ZN A 503 1555 1555 2.11 LINK NE2 HIS A 460 ZN ZN A 503 1555 1555 2.02 LINK SG CYS A 469 ZN ZN A 505 1555 1555 2.37 LINK SG CYS A 472 ZN ZN A 505 1555 1555 2.72 LINK NE2 HIS A 485 ZN ZN A 505 1555 1555 2.05 LINK SG CYS B 353 ZN ZN B 501 1555 1555 2.35 LINK SG CYS B 356 ZN ZN B 501 1555 1555 2.23 LINK NE2 HIS B 369 ZN ZN B 501 1555 1555 2.16 LINK NE2 HIS B 373 ZN ZN B 501 1555 1555 1.98 LINK SG CYS B 381 ZN ZN B 505 1555 1555 2.30 LINK SG CYS B 384 ZN ZN B 505 1555 1555 2.40 LINK NE2 HIS B 397 ZN ZN B 505 1555 1555 2.17 LINK NE2 HIS B 401 ZN ZN B 505 1555 1555 2.09 LINK SG CYS B 409 ZN ZN B 502 1555 1555 2.31 LINK SG CYS B 412 ZN ZN B 502 1555 1555 2.30 LINK NE2 HIS B 425 ZN ZN B 502 1555 1555 2.16 LINK NE2 HIS B 430 ZN ZN B 502 1555 1555 2.21 LINK SG CYS B 439 ZN ZN B 503 1555 1555 2.41 LINK SG CYS B 442 ZN ZN B 503 1555 1555 2.24 LINK NE2 HIS B 455 ZN ZN B 503 1555 1555 2.09 LINK NE2 HIS B 460 ZN ZN B 503 1555 1555 2.13 LINK SG CYS B 469 ZN ZN B 504 1555 1555 2.17 LINK SG CYS B 472 ZN ZN B 504 1555 1555 2.20 LINK NE2 HIS B 485 ZN ZN B 504 1555 1555 2.25 LINK NE2 HIS B 489 ZN ZN B 504 1555 1555 2.03 SITE 1 AC1 4 CYS A 353 CYS A 356 HIS A 369 HIS A 373 SITE 1 AC2 4 CYS A 409 CYS A 412 HIS A 425 HIS A 430 SITE 1 AC3 4 CYS A 439 CYS A 442 HIS A 455 HIS A 460 SITE 1 AC4 4 CYS A 381 CYS A 384 HIS A 397 HIS A 401 SITE 1 AC5 3 CYS A 469 CYS A 472 HIS A 485 SITE 1 AC6 4 CYS B 353 CYS B 356 HIS B 369 HIS B 373 SITE 1 AC7 4 CYS B 409 CYS B 412 HIS B 425 HIS B 430 SITE 1 AC8 4 CYS B 439 CYS B 442 HIS B 455 HIS B 460 SITE 1 AC9 4 CYS B 469 CYS B 472 HIS B 485 HIS B 489 SITE 1 AD1 4 CYS B 381 CYS B 384 HIS B 397 HIS B 401 CRYST1 46.167 56.502 67.486 78.41 79.31 78.60 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021660 -0.004369 -0.003394 0.00000 SCALE2 0.000000 0.018055 -0.003125 0.00000 SCALE3 0.000000 0.000000 0.015304 0.00000