HEADER TRANSFERASE 20-SEP-17 5YF1 TITLE CRYSTAL STRUCTURE OF CARNMT1 BOUND TO CARNOSINE AND SFG COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARNOSINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: METHYLTRANSFERASE DOMAIN (UNP RESIDUES 53-409); COMPND 5 EC: 2.1.1.22; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CARNMT1, C9ORF41; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHISGB1 KEYWDS SAM, METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.CAO,H.LI REVDAT 2 27-MAR-24 5YF1 1 LINK REVDAT 1 01-AUG-18 5YF1 0 JRNL AUTH R.CAO,X.ZHANG,X.LIU,Y.LI,H.LI JRNL TITL MOLECULAR BASIS FOR HISTIDINE N1 POSITION-SPECIFIC JRNL TITL 2 METHYLATION BY CARNMT1. JRNL REF CELL RES. V. 28 494 2018 JRNL REFN ISSN 1748-7838 JRNL PMID 29463897 JRNL DOI 10.1038/S41422-018-0003-0 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 62119 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5994 - 6.7120 0.99 2967 163 0.1858 0.1781 REMARK 3 2 6.7120 - 5.3310 1.00 2819 137 0.1773 0.1889 REMARK 3 3 5.3310 - 4.6582 1.00 2784 129 0.1280 0.1455 REMARK 3 4 4.6582 - 4.2327 1.00 2743 148 0.1187 0.1574 REMARK 3 5 4.2327 - 3.9296 1.00 2742 134 0.1243 0.1535 REMARK 3 6 3.9296 - 3.6981 1.00 2690 154 0.1321 0.1745 REMARK 3 7 3.6981 - 3.5130 1.00 2684 159 0.1429 0.1754 REMARK 3 8 3.5130 - 3.3601 1.00 2663 145 0.1492 0.2051 REMARK 3 9 3.3601 - 3.2308 1.00 2698 142 0.1687 0.2225 REMARK 3 10 3.2308 - 3.1194 0.99 2626 146 0.1830 0.2205 REMARK 3 11 3.1194 - 3.0219 0.98 2645 142 0.1848 0.2195 REMARK 3 12 3.0219 - 2.9355 0.99 2634 132 0.1871 0.2288 REMARK 3 13 2.9355 - 2.8582 0.99 2625 151 0.1896 0.2281 REMARK 3 14 2.8582 - 2.7885 0.99 2628 134 0.2009 0.2676 REMARK 3 15 2.7885 - 2.7251 0.99 2629 137 0.2042 0.2404 REMARK 3 16 2.7251 - 2.6672 0.99 2622 145 0.2146 0.2439 REMARK 3 17 2.6672 - 2.6138 0.99 2613 166 0.2177 0.2582 REMARK 3 18 2.6138 - 2.5645 0.99 2599 153 0.2283 0.2627 REMARK 3 19 2.5645 - 2.5187 1.00 2683 118 0.2351 0.2719 REMARK 3 20 2.5187 - 2.4760 1.00 2621 128 0.2356 0.2508 REMARK 3 21 2.4760 - 2.4361 1.00 2667 130 0.2488 0.2953 REMARK 3 22 2.4361 - 2.3986 0.99 2612 132 0.2568 0.2923 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6039 REMARK 3 ANGLE : 0.917 8176 REMARK 3 CHIRALITY : 0.051 858 REMARK 3 PLANARITY : 0.005 1042 REMARK 3 DIHEDRAL : 17.817 3550 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -63.0709 52.8875 -1.4051 REMARK 3 T TENSOR REMARK 3 T11: 0.3353 T22: 0.3361 REMARK 3 T33: 0.4318 T12: 0.0762 REMARK 3 T13: 0.0321 T23: 0.1078 REMARK 3 L TENSOR REMARK 3 L11: 2.1758 L22: 2.4651 REMARK 3 L33: 1.8053 L12: 0.8087 REMARK 3 L13: -0.1702 L23: -0.4013 REMARK 3 S TENSOR REMARK 3 S11: -0.0656 S12: 0.4729 S13: 0.4846 REMARK 3 S21: -0.1358 S22: 0.0719 S23: 0.1281 REMARK 3 S31: -0.3394 S32: -0.1448 S33: -0.0507 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.6631 59.4577 -2.4294 REMARK 3 T TENSOR REMARK 3 T11: 0.3946 T22: 0.2731 REMARK 3 T33: 0.3559 T12: -0.0942 REMARK 3 T13: 0.0000 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 2.3143 L22: 0.9615 REMARK 3 L33: 1.3876 L12: 0.5788 REMARK 3 L13: -0.6293 L23: -0.2042 REMARK 3 S TENSOR REMARK 3 S11: 0.0252 S12: 0.0782 S13: 0.5332 REMARK 3 S21: 0.1043 S22: 0.0139 S23: 0.1233 REMARK 3 S31: -0.2816 S32: 0.0773 S33: -0.0107 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 409 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.3888 51.2074 -5.1889 REMARK 3 T TENSOR REMARK 3 T11: 0.3038 T22: 0.3021 REMARK 3 T33: 0.2560 T12: -0.0840 REMARK 3 T13: -0.0277 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 2.5410 L22: 1.1563 REMARK 3 L33: 1.1637 L12: 0.6191 REMARK 3 L13: -0.9306 L23: -0.2321 REMARK 3 S TENSOR REMARK 3 S11: -0.0366 S12: -0.0015 S13: 0.1469 REMARK 3 S21: -0.0101 S22: 0.0336 S23: 0.0188 REMARK 3 S31: -0.2241 S32: 0.2446 S33: 0.0306 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 56 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.4629 23.4118 -19.3211 REMARK 3 T TENSOR REMARK 3 T11: 0.3066 T22: 0.2541 REMARK 3 T33: 0.2535 T12: -0.0399 REMARK 3 T13: 0.0419 T23: 0.0633 REMARK 3 L TENSOR REMARK 3 L11: 1.2771 L22: 2.3848 REMARK 3 L33: 1.7672 L12: 1.3387 REMARK 3 L13: -0.1828 L23: -0.1948 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: 0.0424 S13: 0.1067 REMARK 3 S21: 0.0097 S22: 0.0694 S23: 0.2157 REMARK 3 S31: 0.1033 S32: -0.1186 S33: -0.0505 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.1169 17.0186 -10.6646 REMARK 3 T TENSOR REMARK 3 T11: 0.4201 T22: 0.3861 REMARK 3 T33: 0.3659 T12: -0.1268 REMARK 3 T13: 0.0057 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 2.1550 L22: 1.8069 REMARK 3 L33: 1.6503 L12: -0.2954 REMARK 3 L13: 0.1348 L23: 0.0699 REMARK 3 S TENSOR REMARK 3 S11: -0.2173 S12: 0.0382 S13: -0.0786 REMARK 3 S21: -0.2606 S22: 0.0721 S23: 0.4164 REMARK 3 S31: 0.4104 S32: -0.6742 S33: 0.1276 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): -51.4940 16.2197 6.4248 REMARK 3 T TENSOR REMARK 3 T11: 0.2682 T22: 0.1920 REMARK 3 T33: 0.2492 T12: 0.0208 REMARK 3 T13: 0.0232 T23: 0.0648 REMARK 3 L TENSOR REMARK 3 L11: 0.7090 L22: 0.7243 REMARK 3 L33: 1.9036 L12: 0.1079 REMARK 3 L13: -0.5031 L23: -0.0528 REMARK 3 S TENSOR REMARK 3 S11: -0.0924 S12: -0.0659 S13: -0.0771 REMARK 3 S21: 0.0307 S22: 0.0046 S23: -0.0127 REMARK 3 S31: 0.2700 S32: 0.0220 S33: 0.0837 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 343 THROUGH 409 ) REMARK 3 ORIGIN FOR THE GROUP (A): -55.4147 31.2747 11.2441 REMARK 3 T TENSOR REMARK 3 T11: 0.2949 T22: 0.2172 REMARK 3 T33: 0.2349 T12: 0.0316 REMARK 3 T13: 0.0403 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 2.0658 L22: 0.9450 REMARK 3 L33: 1.3642 L12: 0.2452 REMARK 3 L13: -0.6733 L23: 0.1171 REMARK 3 S TENSOR REMARK 3 S11: 0.0422 S12: -0.0274 S13: 0.0778 REMARK 3 S21: 0.0955 S22: -0.0495 S23: 0.0946 REMARK 3 S31: -0.1814 S32: -0.0692 S33: 0.0126 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YF1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300005171. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62119 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.399 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.84500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 8000, 0.1 M MES, PH 6.0, 0.2 M REMARK 280 CAAC, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.21433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 216.42867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 162.32150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 270.53583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.10717 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.21433 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 216.42867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 270.53583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 162.32150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 54.10717 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA B 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 733 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 48 REMARK 465 PRO A 49 REMARK 465 LEU A 50 REMARK 465 GLY A 51 REMARK 465 SER A 52 REMARK 465 SER A 53 REMARK 465 THR A 54 REMARK 465 GLU A 55 REMARK 465 GLU A 56 REMARK 465 MET A 133 REMARK 465 PHE A 134 REMARK 465 GLU A 135 REMARK 465 ASN A 136 REMARK 465 LYS A 137 REMARK 465 GLU A 138 REMARK 465 TYR A 139 REMARK 465 GLY A 140 REMARK 465 GLU A 141 REMARK 465 ASP A 142 REMARK 465 GLY A 143 REMARK 465 ASN A 144 REMARK 465 GLY A 145 REMARK 465 GLY B 48 REMARK 465 PRO B 49 REMARK 465 LEU B 50 REMARK 465 GLY B 51 REMARK 465 SER B 52 REMARK 465 SER B 53 REMARK 465 THR B 54 REMARK 465 GLU B 55 REMARK 465 ASP B 142 REMARK 465 GLY B 143 REMARK 465 ASN B 144 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR B 396 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 246 -63.24 -129.29 REMARK 500 PRO A 343 -159.26 -96.53 REMARK 500 HIS B 132 32.23 -98.89 REMARK 500 PRO B 343 -158.52 -90.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 246 O REMARK 620 2 SER B 246 OG 73.7 REMARK 620 3 SER B 246 O 0.0 73.7 REMARK 620 4 SER B 246 OG 73.7 0.0 73.7 REMARK 620 5 ASP B 279 OD2 91.2 97.5 91.2 97.5 REMARK 620 6 ASP B 279 OD2 91.2 97.5 91.2 97.5 0.0 REMARK 620 7 HOH B 733 O 74.2 147.7 74.2 147.7 87.0 87.0 REMARK 620 8 HOH B 733 O 74.2 147.7 74.2 147.7 87.0 87.0 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 654 O REMARK 620 2 HOH B 744 O 79.5 REMARK 620 3 HOH B 809 O 156.9 86.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SFG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8V0 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SFG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8V0 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 507 DBREF 5YF1 A 53 409 UNP Q8N4J0 CARME_HUMAN 53 409 DBREF 5YF1 B 53 409 UNP Q8N4J0 CARME_HUMAN 53 409 SEQADV 5YF1 GLY A 48 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF1 PRO A 49 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF1 LEU A 50 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF1 GLY A 51 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF1 SER A 52 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF1 GLY B 48 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF1 PRO B 49 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF1 LEU B 50 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF1 GLY B 51 UNP Q8N4J0 EXPRESSION TAG SEQADV 5YF1 SER B 52 UNP Q8N4J0 EXPRESSION TAG SEQRES 1 A 362 GLY PRO LEU GLY SER SER THR GLU GLU GLU GLU GLU ARG SEQRES 2 A 362 LEU GLU ARG GLU HIS PHE TRP LYS ILE ILE ASN ALA PHE SEQRES 3 A 362 ARG TYR TYR GLY THR SER MET HIS GLU ARG VAL ASN ARG SEQRES 4 A 362 THR GLU ARG GLN PHE ARG SER LEU PRO ALA ASN GLN GLN SEQRES 5 A 362 LYS LEU LEU PRO GLN PHE LEU LEU HIS LEU ASP LYS ILE SEQRES 6 A 362 ARG LYS CYS ILE ASP HIS ASN GLN GLU ILE LEU LEU THR SEQRES 7 A 362 ILE VAL ASN ASP CYS ILE HIS MET PHE GLU ASN LYS GLU SEQRES 8 A 362 TYR GLY GLU ASP GLY ASN GLY LYS ILE MET PRO ALA SER SEQRES 9 A 362 THR PHE ASP MET ASP LYS LEU LYS SER THR LEU LYS GLN SEQRES 10 A 362 PHE VAL ARG ASP TRP SER GLU THR GLY LYS ALA GLU ARG SEQRES 11 A 362 ASP ALA CYS TYR GLN PRO ILE ILE LYS GLU ILE LEU LYS SEQRES 12 A 362 ASN PHE PRO LYS GLU ARG TRP ASP PRO SER LYS VAL ASN SEQRES 13 A 362 ILE LEU VAL PRO GLY ALA GLY LEU GLY ARG LEU ALA TRP SEQRES 14 A 362 GLU ILE ALA MET LEU GLY TYR ALA CYS GLN GLY ASN GLU SEQRES 15 A 362 TRP SER PHE PHE MET LEU PHE SER SER ASN PHE VAL LEU SEQRES 16 A 362 ASN ARG CYS SER GLU ILE ASN LYS TYR LYS LEU TYR PRO SEQRES 17 A 362 TRP ILE HIS GLN PHE SER ASN ASN ARG ARG SER ALA ASP SEQRES 18 A 362 GLN ILE ARG PRO ILE PHE PHE PRO ASP VAL ASP PRO HIS SEQRES 19 A 362 SER LEU PRO PRO GLY SER ASN PHE SER MET THR ALA GLY SEQRES 20 A 362 ASP PHE GLN GLU ILE TYR SER GLU CYS ASN THR TRP ASP SEQRES 21 A 362 CYS ILE ALA THR CYS PHE PHE ILE ASP THR ALA HIS ASN SEQRES 22 A 362 VAL ILE ASP TYR ILE ASP THR ILE TRP LYS ILE LEU LYS SEQRES 23 A 362 PRO GLY GLY ILE TRP ILE ASN LEU GLY PRO LEU LEU TYR SEQRES 24 A 362 HIS PHE GLU ASN LEU ALA ASN GLU LEU SER ILE GLU LEU SEQRES 25 A 362 SER TYR GLU ASP ILE LYS ASN VAL VAL LEU GLN TYR GLY SEQRES 26 A 362 PHE LYS VAL GLU VAL GLU LYS GLU SER VAL LEU SER THR SEQRES 27 A 362 TYR THR VAL ASN ASP LEU SER MET MET LYS TYR TYR TYR SEQRES 28 A 362 GLU CYS VAL LEU PHE VAL VAL ARG LYS PRO GLN SEQRES 1 B 362 GLY PRO LEU GLY SER SER THR GLU GLU GLU GLU GLU ARG SEQRES 2 B 362 LEU GLU ARG GLU HIS PHE TRP LYS ILE ILE ASN ALA PHE SEQRES 3 B 362 ARG TYR TYR GLY THR SER MET HIS GLU ARG VAL ASN ARG SEQRES 4 B 362 THR GLU ARG GLN PHE ARG SER LEU PRO ALA ASN GLN GLN SEQRES 5 B 362 LYS LEU LEU PRO GLN PHE LEU LEU HIS LEU ASP LYS ILE SEQRES 6 B 362 ARG LYS CYS ILE ASP HIS ASN GLN GLU ILE LEU LEU THR SEQRES 7 B 362 ILE VAL ASN ASP CYS ILE HIS MET PHE GLU ASN LYS GLU SEQRES 8 B 362 TYR GLY GLU ASP GLY ASN GLY LYS ILE MET PRO ALA SER SEQRES 9 B 362 THR PHE ASP MET ASP LYS LEU LYS SER THR LEU LYS GLN SEQRES 10 B 362 PHE VAL ARG ASP TRP SER GLU THR GLY LYS ALA GLU ARG SEQRES 11 B 362 ASP ALA CYS TYR GLN PRO ILE ILE LYS GLU ILE LEU LYS SEQRES 12 B 362 ASN PHE PRO LYS GLU ARG TRP ASP PRO SER LYS VAL ASN SEQRES 13 B 362 ILE LEU VAL PRO GLY ALA GLY LEU GLY ARG LEU ALA TRP SEQRES 14 B 362 GLU ILE ALA MET LEU GLY TYR ALA CYS GLN GLY ASN GLU SEQRES 15 B 362 TRP SER PHE PHE MET LEU PHE SER SER ASN PHE VAL LEU SEQRES 16 B 362 ASN ARG CYS SER GLU ILE ASN LYS TYR LYS LEU TYR PRO SEQRES 17 B 362 TRP ILE HIS GLN PHE SER ASN ASN ARG ARG SER ALA ASP SEQRES 18 B 362 GLN ILE ARG PRO ILE PHE PHE PRO ASP VAL ASP PRO HIS SEQRES 19 B 362 SER LEU PRO PRO GLY SER ASN PHE SER MET THR ALA GLY SEQRES 20 B 362 ASP PHE GLN GLU ILE TYR SER GLU CYS ASN THR TRP ASP SEQRES 21 B 362 CYS ILE ALA THR CYS PHE PHE ILE ASP THR ALA HIS ASN SEQRES 22 B 362 VAL ILE ASP TYR ILE ASP THR ILE TRP LYS ILE LEU LYS SEQRES 23 B 362 PRO GLY GLY ILE TRP ILE ASN LEU GLY PRO LEU LEU TYR SEQRES 24 B 362 HIS PHE GLU ASN LEU ALA ASN GLU LEU SER ILE GLU LEU SEQRES 25 B 362 SER TYR GLU ASP ILE LYS ASN VAL VAL LEU GLN TYR GLY SEQRES 26 B 362 PHE LYS VAL GLU VAL GLU LYS GLU SER VAL LEU SER THR SEQRES 27 B 362 TYR THR VAL ASN ASP LEU SER MET MET LYS TYR TYR TYR SEQRES 28 B 362 GLU CYS VAL LEU PHE VAL VAL ARG LYS PRO GLN HET SFG A 501 27 HET 8V0 A 502 16 HET ACT A 503 4 HET EDO A 504 4 HET SFG B 501 27 HET 8V0 B 502 16 HET CA B 503 1 HET CA B 504 1 HET ACT B 505 4 HET EDO B 506 4 HET EDO B 507 4 HETNAM SFG SINEFUNGIN HETNAM 8V0 (2~{S})-2-(3-AZANYLPROPANOYLAMINO)-3-(1~{H}-IMIDAZOL-4- HETNAM 2 8V0 YL)PROPANOIC ACID HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETSYN SFG ADENOSYL-ORNITHINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SFG 2(C15 H23 N7 O5) FORMUL 4 8V0 2(C9 H14 N4 O3) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 6 EDO 3(C2 H6 O2) FORMUL 9 CA 2(CA 2+) FORMUL 14 HOH *361(H2 O) HELIX 1 AA1 GLU A 57 LEU A 94 1 38 HELIX 2 AA2 PRO A 95 LYS A 100 1 6 HELIX 3 AA3 GLN A 104 ASP A 129 1 26 HELIX 4 AA4 SER A 151 SER A 170 1 20 HELIX 5 AA5 GLY A 173 PHE A 192 1 20 HELIX 6 AA6 ASP A 198 LYS A 201 5 4 HELIX 7 AA7 GLY A 212 LEU A 221 1 10 HELIX 8 AA8 SER A 231 ARG A 244 1 14 HELIX 9 AA9 ARG A 265 ILE A 270 1 6 HELIX 10 AB1 ASP A 295 TYR A 300 1 6 HELIX 11 AB2 PHE A 314 ALA A 318 5 5 HELIX 12 AB3 ASN A 320 ILE A 331 1 12 HELIX 13 AB4 SER A 360 GLY A 372 1 13 HELIX 14 AB5 GLU B 57 SER B 93 1 37 HELIX 15 AB6 PRO B 95 LYS B 100 1 6 HELIX 16 AB7 GLN B 104 HIS B 132 1 29 HELIX 17 AB8 MET B 133 GLY B 140 5 8 HELIX 18 AB9 SER B 151 SER B 170 1 20 HELIX 19 AC1 GLY B 173 PHE B 192 1 20 HELIX 20 AC2 ASP B 198 LYS B 201 5 4 HELIX 21 AC3 GLY B 212 LEU B 221 1 10 HELIX 22 AC4 SER B 231 CYS B 245 1 15 HELIX 23 AC5 ARG B 265 ILE B 270 1 6 HELIX 24 AC6 ASP B 279 LEU B 283 5 5 HELIX 25 AC7 ASP B 295 TYR B 300 1 6 HELIX 26 AC8 PHE B 314 ALA B 318 5 5 HELIX 27 AC9 ASN B 320 ILE B 331 1 12 HELIX 28 AD1 SER B 360 GLY B 372 1 13 SHEET 1 AA112 ASN A 288 ALA A 293 0 SHEET 2 AA112 ALA A 224 GLU A 229 1 N GLY A 227 O SER A 290 SHEET 3 AA112 ASN A 203 VAL A 206 1 N ILE A 204 O ALA A 224 SHEET 4 AA112 TRP A 306 CYS A 312 1 O CYS A 308 N LEU A 205 SHEET 5 AA112 LEU A 332 GLY A 342 1 O LYS A 333 N TRP A 306 SHEET 6 AA112 MET A 394 ARG A 406 -1 O PHE A 403 N ASN A 340 SHEET 7 AA112 MET B 394 ARG B 406 -1 O LYS B 395 N TYR A 397 SHEET 8 AA112 LEU B 332 GLY B 342 -1 N ASN B 340 O PHE B 403 SHEET 9 AA112 TRP B 306 CYS B 312 1 N TRP B 306 O LYS B 333 SHEET 10 AA112 ASN B 203 PRO B 207 1 N LEU B 205 O CYS B 308 SHEET 11 AA112 ALA B 224 GLU B 229 1 O GLN B 226 N ILE B 204 SHEET 12 AA112 ASN B 288 ALA B 293 1 O SER B 290 N GLY B 227 SHEET 1 AA2 4 LYS A 374 SER A 384 0 SHEET 2 AA2 4 MET A 394 ARG A 406 -1 O LEU A 402 N LYS A 379 SHEET 3 AA2 4 MET B 394 ARG B 406 -1 O LYS B 395 N TYR A 397 SHEET 4 AA2 4 LYS B 374 SER B 384 -1 N SER B 384 O TYR B 398 SHEET 1 AA3 2 TYR A 251 LEU A 253 0 SHEET 2 AA3 2 ILE A 273 PHE A 275 -1 O ILE A 273 N LEU A 253 SHEET 1 AA4 2 TYR B 251 LEU B 253 0 SHEET 2 AA4 2 ILE B 273 PHE B 275 -1 O ILE B 273 N LEU B 253 LINK O SER B 246 CA CA B 503 1555 1555 2.39 LINK OG SER B 246 CA CA B 503 1555 1555 2.52 LINK O SER B 246 CA CA B 503 1555 8555 2.39 LINK OG SER B 246 CA CA B 503 1555 8555 2.52 LINK OD2 ASP B 279 CA CA B 503 1555 1555 2.48 LINK OD2 ASP B 279 CA CA B 503 1555 8555 2.48 LINK CA CA B 503 O HOH B 733 1555 1555 2.55 LINK CA CA B 503 O HOH B 733 1555 8555 2.55 LINK CA CA B 504 O HOH B 654 1555 1555 3.04 LINK CA CA B 504 O HOH B 744 1555 1555 3.05 LINK CA CA B 504 O HOH B 809 1555 10554 2.38 CISPEP 1 PHE A 275 PRO A 276 0 -2.59 CISPEP 2 PHE B 275 PRO B 276 0 -7.10 SITE 1 AC1 22 GLN A 164 ARG A 167 TYR A 181 GLY A 208 SITE 2 AC1 22 ASN A 228 GLU A 229 TRP A 230 SER A 231 SITE 3 AC1 22 MET A 234 GLY A 294 ASP A 295 PHE A 296 SITE 4 AC1 22 CYS A 312 PHE A 313 PHE A 314 THR A 317 SITE 5 AC1 22 TYR A 324 TYR A 386 8V0 A 502 ACT A 503 SITE 6 AC1 22 HOH A 622 HOH A 626 SITE 1 AC2 9 PHE A 313 ASP A 316 PRO A 343 LEU A 345 SITE 2 AC2 9 HIS A 347 TYR A 386 TYR A 396 TYR A 398 SITE 3 AC2 9 SFG A 501 SITE 1 AC3 4 LYS A 157 SER A 231 MET A 234 SFG A 501 SITE 1 AC4 5 GLN A 104 PHE A 105 SER A 266 HOH A 629 SITE 2 AC4 5 ASP B 363 SITE 1 AC5 22 GLN B 164 ARG B 167 TYR B 181 GLY B 208 SITE 2 AC5 22 ASN B 228 GLU B 229 TRP B 230 SER B 231 SITE 3 AC5 22 MET B 234 GLY B 294 ASP B 295 PHE B 296 SITE 4 AC5 22 CYS B 312 PHE B 313 PHE B 314 THR B 317 SITE 5 AC5 22 TYR B 324 TYR B 386 8V0 B 502 HOH B 612 SITE 6 AC5 22 HOH B 615 HOH B 653 SITE 1 AC6 8 PHE B 313 ASP B 316 LEU B 345 HIS B 347 SITE 2 AC6 8 TYR B 386 TYR B 396 TYR B 398 SFG B 501 SITE 1 AC7 3 SER B 246 ASP B 279 HOH B 733 SITE 1 AC8 4 ASP B 110 HOH B 654 HOH B 744 HOH B 809 SITE 1 AC9 6 LEU B 189 LYS B 194 PRO B 199 LEU B 221 SITE 2 AC9 6 TYR B 223 HOH B 662 SITE 1 AD1 4 ARG A 265 TYR B 361 LYS B 365 GLU B 378 SITE 1 AD2 5 ASP A 363 GLN B 104 PHE B 105 SER B 266 SITE 2 AD2 5 HOH B 655 CRYST1 128.125 128.125 324.643 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007805 0.004506 0.000000 0.00000 SCALE2 0.000000 0.009012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003080 0.00000