HEADER OXIDOREDUCTASE 25-SEP-17 5YGQ TITLE CRYSTAL STRUCTURE OF FERREDOXIN NADP+ OXIDOREDUCTASE FROM TITLE 2 RHODOPSEUDOMONAS PALUSTRIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN--NADP REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FD-NADP(+) REDUCTASE; COMPND 5 EC: 1.18.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS (STRAIN ATCC BAA-98 SOURCE 3 / CGA009); SOURCE 4 ORGANISM_TAXID: 258594; SOURCE 5 STRAIN: ATCC BAA-98 / CGA009; SOURCE 6 GENE: RPA3954; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ELECTRON TRANSPORT, FAD, FLAVOPROTEIN, NADP, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.MURAKI,D.SEO,G.KURISU REVDAT 3 22-NOV-23 5YGQ 1 REMARK REVDAT 2 29-JAN-20 5YGQ 1 JRNL REVDAT 1 26-SEP-18 5YGQ 0 JRNL AUTH D.SEO,N.MURAKI,G.KURISU JRNL TITL KINETIC AND STRUCTURAL INSIGHT INTO A ROLE OF THE RE-FACE JRNL TITL 2 TYR328 RESIDUE OF THE HOMODIMER TYPE JRNL TITL 3 FERREDOXIN-NADP+OXIDOREDUCTASE FROM RHODOPSEUDOMONAS JRNL TITL 4 PALUSTRIS IN THE REACTION WITH NADP+/NADPH. JRNL REF BIOCHIM BIOPHYS ACTA 48140 2019 JRNL REF 2 BIOENERG JRNL REFN ISSN 1879-2650 JRNL PMID 31838096 JRNL DOI 10.1016/J.BBABIO.2019.148140 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 25218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1341 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1287 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5179 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.33000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.645 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.302 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.251 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.465 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5419 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5238 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7375 ; 2.143 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12094 ; 1.604 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 683 ; 7.395 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;39.813 ;25.283 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 905 ;19.651 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;25.637 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 844 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6047 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1133 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2732 ; 2.828 ; 4.153 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2731 ; 2.828 ; 4.152 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3415 ; 4.551 ; 6.218 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3416 ; 4.551 ; 6.219 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2687 ; 2.541 ; 4.371 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2688 ; 2.541 ; 4.371 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3961 ; 4.136 ; 6.424 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5923 ; 6.644 ;31.830 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5919 ; 6.641 ;31.831 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 341 B 3 341 37210 0.14 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 342 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7320 11.6530 29.4771 REMARK 3 T TENSOR REMARK 3 T11: 0.1572 T22: 0.0030 REMARK 3 T33: 0.0392 T12: 0.0060 REMARK 3 T13: 0.0034 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.2682 L22: 0.4845 REMARK 3 L33: 0.0037 L12: -0.3216 REMARK 3 L13: 0.0038 L23: -0.0170 REMARK 3 S TENSOR REMARK 3 S11: -0.0323 S12: -0.0200 S13: 0.0267 REMARK 3 S21: 0.0755 S22: 0.0290 S23: -0.0242 REMARK 3 S31: -0.0202 S32: -0.0004 S33: 0.0034 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 342 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7800 48.1342 3.7589 REMARK 3 T TENSOR REMARK 3 T11: 0.1719 T22: 0.0048 REMARK 3 T33: 0.0202 T12: -0.0075 REMARK 3 T13: -0.0076 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.0523 L22: 0.8578 REMARK 3 L33: 0.2652 L12: 0.0788 REMARK 3 L13: -0.1135 L23: -0.0663 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: -0.0104 S13: 0.0037 REMARK 3 S21: -0.1298 S22: 0.0249 S23: -0.0386 REMARK 3 S31: -0.0003 S32: 0.0271 S33: -0.0227 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5YGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1300005065. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27560 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3AB1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AMMONIUM IODIDE, TRIS-HCL REMARK 280 PH8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.43400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.09100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.61350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.09100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.43400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.61350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 79 N - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 LEU A 301 CA - CB - CG ANGL. DEV. = 18.6 DEGREES REMARK 500 MET B 62 CG - SD - CE ANGL. DEV. = 10.3 DEGREES REMARK 500 PHE B 79 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 MET B 245 CG - SD - CE ANGL. DEV. = 12.6 DEGREES REMARK 500 LEU B 301 CA - CB - CG ANGL. DEV. = 18.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 49 48.33 -142.37 REMARK 500 ASN A 80 74.34 -115.80 REMARK 500 ASN A 80 72.44 -117.67 REMARK 500 ALA A 136 -36.27 -39.89 REMARK 500 ARG A 147 -100.20 -78.64 REMARK 500 ASN A 235 19.26 48.69 REMARK 500 ASN A 280 -33.65 -36.28 REMARK 500 TYR B 49 50.49 -141.33 REMARK 500 ASN B 80 73.01 -117.70 REMARK 500 ASP B 187 55.60 -92.25 REMARK 500 ASN B 280 -29.50 -39.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 134 GLU A 135 -141.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 401 DBREF 5YGQ A 1 342 UNP Q6N2U4 FENR_RHOPA 1 342 DBREF 5YGQ B 1 342 UNP Q6N2U4 FENR_RHOPA 1 342 SEQRES 1 A 342 MET THR GLU THR ILE LYS THR ASP VAL LEU ILE VAL GLY SEQRES 2 A 342 ALA GLY PRO CYS GLY LEU PHE ALA VAL PHE GLU LEU GLY SEQRES 3 A 342 LEU LEU ASP VAL LYS ALA HIS LEU VAL ASP ILE LEU ASP SEQRES 4 A 342 LYS VAL GLY GLY GLN CYS ALA GLU LEU TYR PRO GLU LYS SEQRES 5 A 342 PRO ILE TYR ASP ILE PRO GLY ILE PRO MET VAL THR GLY SEQRES 6 A 342 HIS GLY LEU THR GLU ALA LEU MET GLU GLN ILE LYS PRO SEQRES 7 A 342 PHE ASN PRO THR PHE HIS LEU SER GLU MET VAL GLU ASN SEQRES 8 A 342 VAL GLU LYS ILE GLY ASP PRO GLY PHE ARG VAL THR THR SEQRES 9 A 342 ASN ALA GLY LYS VAL PHE GLU CYS THR VAL LEU VAL VAL SEQRES 10 A 342 ALA ALA GLY GLY GLY SER PHE LEU PRO LYS ARG PRO PRO SEQRES 11 A 342 VAL PRO GLY VAL GLU ALA TYR GLU GLY THR SER VAL HIS SEQRES 12 A 342 TYR ALA VAL ARG LYS MET GLU ASP PHE ARG GLY LYS ASP SEQRES 13 A 342 ILE LEU ILE VAL GLY GLY GLY ASP SER ALA LEU ASP TRP SEQRES 14 A 342 THR LEU ASN LEU ASN PRO ILE ALA LYS SER MET THR LEU SEQRES 15 A 342 VAL HIS ARG ARG ASP ASP PHE ARG GLY ALA PRO HIS SER SEQRES 16 A 342 VAL GLU GLN MET ARG GLN LEU VAL ALA SER GLY LYS LEU SEQRES 17 A 342 ASP LEU LYS ILE GLY GLN ILE THR GLU LEU GLN GLY ASP SEQRES 18 A 342 ASN GLY GLN LEU THR GLY ALA THR VAL LYS LEU ASN ASP SEQRES 19 A 342 ASN THR THR SER GLN ILE LYS CYS ASP ALA MET LEU PRO SEQRES 20 A 342 PHE PHE GLY LEU THR MET LYS LEU GLY PRO VAL ALA ASN SEQRES 21 A 342 TRP GLY LEU ASP LEU GLU ASN ASN LEU ILE PRO VAL ASP SEQRES 22 A 342 THR GLY THR PHE GLU THR ASN VAL PRO GLY ILE PHE ALA SEQRES 23 A 342 ILE GLY ASP ILE ASN THR TYR PRO GLY LYS LEU LYS LEU SEQRES 24 A 342 ILE LEU SER GLY PHE HIS GLU GLY ALA LEU MET ALA GLN SEQRES 25 A 342 LYS ALA VAL LYS TYR VAL TYR PRO ASP LYS ARG VAL VAL SEQRES 26 A 342 PHE GLN TYR THR THR SER SER THR ASN LEU GLN LYS LYS SEQRES 27 A 342 LEU GLY VAL ASN SEQRES 1 B 342 MET THR GLU THR ILE LYS THR ASP VAL LEU ILE VAL GLY SEQRES 2 B 342 ALA GLY PRO CYS GLY LEU PHE ALA VAL PHE GLU LEU GLY SEQRES 3 B 342 LEU LEU ASP VAL LYS ALA HIS LEU VAL ASP ILE LEU ASP SEQRES 4 B 342 LYS VAL GLY GLY GLN CYS ALA GLU LEU TYR PRO GLU LYS SEQRES 5 B 342 PRO ILE TYR ASP ILE PRO GLY ILE PRO MET VAL THR GLY SEQRES 6 B 342 HIS GLY LEU THR GLU ALA LEU MET GLU GLN ILE LYS PRO SEQRES 7 B 342 PHE ASN PRO THR PHE HIS LEU SER GLU MET VAL GLU ASN SEQRES 8 B 342 VAL GLU LYS ILE GLY ASP PRO GLY PHE ARG VAL THR THR SEQRES 9 B 342 ASN ALA GLY LYS VAL PHE GLU CYS THR VAL LEU VAL VAL SEQRES 10 B 342 ALA ALA GLY GLY GLY SER PHE LEU PRO LYS ARG PRO PRO SEQRES 11 B 342 VAL PRO GLY VAL GLU ALA TYR GLU GLY THR SER VAL HIS SEQRES 12 B 342 TYR ALA VAL ARG LYS MET GLU ASP PHE ARG GLY LYS ASP SEQRES 13 B 342 ILE LEU ILE VAL GLY GLY GLY ASP SER ALA LEU ASP TRP SEQRES 14 B 342 THR LEU ASN LEU ASN PRO ILE ALA LYS SER MET THR LEU SEQRES 15 B 342 VAL HIS ARG ARG ASP ASP PHE ARG GLY ALA PRO HIS SER SEQRES 16 B 342 VAL GLU GLN MET ARG GLN LEU VAL ALA SER GLY LYS LEU SEQRES 17 B 342 ASP LEU LYS ILE GLY GLN ILE THR GLU LEU GLN GLY ASP SEQRES 18 B 342 ASN GLY GLN LEU THR GLY ALA THR VAL LYS LEU ASN ASP SEQRES 19 B 342 ASN THR THR SER GLN ILE LYS CYS ASP ALA MET LEU PRO SEQRES 20 B 342 PHE PHE GLY LEU THR MET LYS LEU GLY PRO VAL ALA ASN SEQRES 21 B 342 TRP GLY LEU ASP LEU GLU ASN ASN LEU ILE PRO VAL ASP SEQRES 22 B 342 THR GLY THR PHE GLU THR ASN VAL PRO GLY ILE PHE ALA SEQRES 23 B 342 ILE GLY ASP ILE ASN THR TYR PRO GLY LYS LEU LYS LEU SEQRES 24 B 342 ILE LEU SER GLY PHE HIS GLU GLY ALA LEU MET ALA GLN SEQRES 25 B 342 LYS ALA VAL LYS TYR VAL TYR PRO ASP LYS ARG VAL VAL SEQRES 26 B 342 PHE GLN TYR THR THR SER SER THR ASN LEU GLN LYS LYS SEQRES 27 B 342 LEU GLY VAL ASN HET FAD A 401 53 HET FAD B 401 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *51(H2 O) HELIX 1 AA1 GLY A 15 LEU A 27 1 13 HELIX 2 AA2 GLY A 42 TYR A 49 1 8 HELIX 3 AA3 GLY A 65 LYS A 77 1 13 HELIX 4 AA4 GLU A 135 GLY A 139 5 5 HELIX 5 AA5 LYS A 148 ARG A 153 5 6 HELIX 6 AA6 GLY A 163 ASN A 174 1 12 HELIX 7 AA7 ALA A 192 SER A 205 1 14 HELIX 8 AA8 LEU A 255 TRP A 261 5 7 HELIX 9 AA9 LEU A 299 TYR A 319 1 21 HELIX 10 AB1 SER A 332 GLY A 340 1 9 HELIX 11 AB2 GLY B 15 LEU B 27 1 13 HELIX 12 AB3 GLY B 42 LEU B 48 1 7 HELIX 13 AB4 GLY B 65 LYS B 77 1 13 HELIX 14 AB5 VAL B 134 GLU B 138 5 5 HELIX 15 AB6 LYS B 148 ARG B 153 5 6 HELIX 16 AB7 GLY B 163 ASN B 174 1 12 HELIX 17 AB8 PRO B 193 SER B 205 1 13 HELIX 18 AB9 LEU B 255 TRP B 261 5 7 HELIX 19 AC1 LEU B 299 TYR B 319 1 21 HELIX 20 AC2 SER B 332 LEU B 339 1 8 SHEET 1 AA1 6 THR A 82 HIS A 84 0 SHEET 2 AA1 6 ALA A 32 VAL A 35 1 N LEU A 34 O THR A 82 SHEET 3 AA1 6 ILE A 5 VAL A 12 1 N ILE A 11 O HIS A 33 SHEET 4 AA1 6 VAL A 109 VAL A 117 1 O VAL A 109 N ILE A 5 SHEET 5 AA1 6 GLY A 99 THR A 104 -1 N VAL A 102 O PHE A 110 SHEET 6 AA1 6 VAL A 89 GLY A 96 -1 N GLU A 93 O ARG A 101 SHEET 1 AA2 5 THR A 82 HIS A 84 0 SHEET 2 AA2 5 ALA A 32 VAL A 35 1 N LEU A 34 O THR A 82 SHEET 3 AA2 5 ILE A 5 VAL A 12 1 N ILE A 11 O HIS A 33 SHEET 4 AA2 5 VAL A 109 VAL A 117 1 O VAL A 109 N ILE A 5 SHEET 5 AA2 5 ILE A 284 ALA A 286 1 O PHE A 285 N VAL A 117 SHEET 1 AA3 2 PRO A 53 ILE A 54 0 SHEET 2 AA3 2 VAL A 63 THR A 64 -1 O VAL A 63 N ILE A 54 SHEET 1 AA4 2 SER A 123 PRO A 126 0 SHEET 2 AA4 2 LEU A 251 LYS A 254 -1 O THR A 252 N LEU A 125 SHEET 1 AA5 6 THR A 237 LYS A 241 0 SHEET 2 AA5 6 GLY A 227 LEU A 232 -1 N VAL A 230 O SER A 238 SHEET 3 AA5 6 ASP A 209 GLN A 219 -1 N GLN A 214 O LYS A 231 SHEET 4 AA5 6 SER A 179 HIS A 184 1 N LEU A 182 O ASP A 209 SHEET 5 AA5 6 ASP A 156 VAL A 160 1 N ILE A 159 O THR A 181 SHEET 6 AA5 6 ALA A 244 PRO A 247 1 O ALA A 244 N LEU A 158 SHEET 1 AA6 2 ILE A 270 PRO A 271 0 SHEET 2 AA6 2 ASN A 291 THR A 292 1 O THR A 292 N ILE A 270 SHEET 1 AA7 6 THR B 82 HIS B 84 0 SHEET 2 AA7 6 ALA B 32 VAL B 35 1 N LEU B 34 O THR B 82 SHEET 3 AA7 6 ILE B 5 VAL B 12 1 N ILE B 11 O HIS B 33 SHEET 4 AA7 6 VAL B 109 VAL B 117 1 O VAL B 109 N ILE B 5 SHEET 5 AA7 6 GLY B 99 THR B 104 -1 N VAL B 102 O PHE B 110 SHEET 6 AA7 6 VAL B 89 GLY B 96 -1 N GLU B 93 O ARG B 101 SHEET 1 AA8 5 THR B 82 HIS B 84 0 SHEET 2 AA8 5 ALA B 32 VAL B 35 1 N LEU B 34 O THR B 82 SHEET 3 AA8 5 ILE B 5 VAL B 12 1 N ILE B 11 O HIS B 33 SHEET 4 AA8 5 VAL B 109 VAL B 117 1 O VAL B 109 N ILE B 5 SHEET 5 AA8 5 ILE B 284 ALA B 286 1 O PHE B 285 N VAL B 117 SHEET 1 AA9 2 PRO B 53 ILE B 54 0 SHEET 2 AA9 2 VAL B 63 THR B 64 -1 O VAL B 63 N ILE B 54 SHEET 1 AB1 2 SER B 123 PRO B 126 0 SHEET 2 AB1 2 LEU B 251 LYS B 254 -1 O THR B 252 N LEU B 125 SHEET 1 AB2 6 THR B 237 LYS B 241 0 SHEET 2 AB2 6 GLY B 227 LEU B 232 -1 N ALA B 228 O ILE B 240 SHEET 3 AB2 6 ASP B 209 GLN B 219 -1 N GLN B 214 O LYS B 231 SHEET 4 AB2 6 SER B 179 HIS B 184 1 N MET B 180 O ASP B 209 SHEET 5 AB2 6 ASP B 156 VAL B 160 1 N ILE B 157 O THR B 181 SHEET 6 AB2 6 ALA B 244 PRO B 247 1 O ALA B 244 N LEU B 158 SHEET 1 AB3 2 ILE B 270 PRO B 271 0 SHEET 2 AB3 2 ASN B 291 THR B 292 1 O THR B 292 N ILE B 270 CISPEP 1 ASP A 97 PRO A 98 0 5.56 CISPEP 2 VAL A 131 PRO A 132 0 -6.68 CISPEP 3 ASP B 97 PRO B 98 0 3.87 CISPEP 4 ASN B 174 PRO B 175 0 14.37 CISPEP 5 ALA B 192 PRO B 193 0 4.46 SITE 1 AC1 32 VAL A 12 GLY A 13 GLY A 15 PRO A 16 SITE 2 AC1 32 CYS A 17 GLY A 18 ASP A 36 ILE A 37 SITE 3 AC1 32 LEU A 38 GLY A 43 GLN A 44 TYR A 49 SITE 4 AC1 32 ILE A 54 ASP A 56 GLU A 87 MET A 88 SITE 5 AC1 32 VAL A 89 ALA A 119 GLY A 120 GLY A 121 SITE 6 AC1 32 GLY A 122 SER A 123 PHE A 124 GLY A 288 SITE 7 AC1 32 ASP A 289 LYS A 298 LEU A 299 ILE A 300 SITE 8 AC1 32 HOH A 513 TYR B 328 THR B 329 THR B 330 SITE 1 AC2 34 TYR A 328 THR A 329 THR A 330 VAL B 12 SITE 2 AC2 34 GLY B 13 GLY B 15 PRO B 16 CYS B 17 SITE 3 AC2 34 GLY B 18 ASP B 36 ILE B 37 LEU B 38 SITE 4 AC2 34 GLY B 43 GLN B 44 TYR B 49 ILE B 54 SITE 5 AC2 34 ASP B 56 GLU B 87 MET B 88 VAL B 89 SITE 6 AC2 34 ALA B 118 ALA B 119 GLY B 120 GLY B 121 SITE 7 AC2 34 GLY B 122 SER B 123 PHE B 124 MET B 253 SITE 8 AC2 34 GLY B 288 ASP B 289 LEU B 299 ILE B 300 SITE 9 AC2 34 HOH B 508 HOH B 517 CRYST1 70.868 81.227 122.182 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014111 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008185 0.00000